RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 UGT2B4P06133 528 aa13.09□□□□□ -0.31
VPS29-211ENST00000553128 ALPIP09923 528 aa13.09□□□□□ -0.31
VPS29-211ENST00000553128 ZSCAN22P10073 491 aaPredicted RBP13.09□□□□□ -0.31
VPS29-211ENST00000553128 CTSEP14091 401 aa13.09□□□□□ -0.31
VPS29-211ENST00000553128 PRCPP42785 496 aa13.09□□□□□ -0.31
VPS29-211ENST00000553128 CCR10P46092 362 aa13.09□□□□□ -0.31
VPS29-211ENST00000553128 KLHL40Q2TBA0 621 aa13.09□□□□□ -0.31
VPS29-211ENST00000553128 LRRK1Q38SD2 2015 aa13.09□□□□□ -0.31
VPS29-211ENST00000553128 CERCAMQ5T4B2 595 aa13.09□□□□□ -0.31
VPS29-211ENST00000553128 FAM183BPQ6ZVS7 135 aa13.09□□□□□ -0.31
VPS29-211ENST00000553128 ZSCAN30Q86W11 494 aa13.09□□□□□ -0.31
VPS29-211ENST00000553128 RCBTB1Q8NDN9 531 aa13.09□□□□□ -0.31
VPS29-211ENST00000553128 ZNF606Q8WXB4 792 aa13.09□□□□□ -0.31
VPS29-211ENST00000553128 SCG3Q8WXD2 468 aaKnown RBP13.09□□□□□ -0.31
VPS29-211ENST00000553128 TMEM159Q96B96 161 aa13.09□□□□□ -0.31
VPS29-211ENST00000553128 CPXM1Q96SM3 734 aa13.09□□□□□ -0.31
VPS29-211ENST00000553128 CEP44Q9C0F1 390 aa13.09□□□□□ -0.31
VPS29-211ENST00000553128 TKTL2Q9H0I9 626 aa13.09□□□□□ -0.31
VPS29-211ENST00000553128 ARHGEF38Q9NXL2 777 aa13.09□□□□□ -0.31
VPS29-211ENST00000553128 ARMCX3Q9UH62 379 aaPredicted RBP13.09□□□□□ -0.31
VPS29-211ENST00000553128 CNTN6Q9UQ52 1028 aa13.09□□□□□ -0.31
VPS29-211ENST00000553128 COQ6Q9Y2Z9 468 aa13.09□□□□□ -0.31
VPS29-211ENST00000553128 SPTBN1Q01082 2364 aaKnown RBP13.09□□□□□ -0.31
VPS29-211ENST00000553128 CREBBPQ92793 2442 aa13.08□□□□□ -0.32
VPS29-211ENST00000553128 LRP4O75096 1905 aa13.08□□□□□ -0.32
VPS29-211ENST00000553128 NKX2-8O15522 239 aa13.08□□□□□ -0.32
VPS29-211ENST00000553128 DUX1O43812 170 aa13.08□□□□□ -0.32
VPS29-211ENST00000553128 HSF2BPO75031 334 aa13.08□□□□□ -0.32
VPS29-211ENST00000553128 FGF3P11487 239 aaPredicted RBP13.08□□□□□ -0.32
VPS29-211ENST00000553128 KRT5P13647 590 aa13.08□□□□□ -0.32
VPS29-211ENST00000553128 CD82P27701 267 aa13.08□□□□□ -0.32
VPS29-211ENST00000553128 OR1E1P30953 314 aa13.08□□□□□ -0.32
VPS29-211ENST00000553128 SYKP43405 635 aa13.08□□□□□ -0.32
VPS29-211ENST00000553128 UQCRFS1P47985 274 aa13.08□□□□□ -0.32
VPS29-211ENST00000553128 ZNF805Q5CZA5 627 aa13.08□□□□□ -0.32
VPS29-211ENST00000553128 EFHC2Q5JST6 749 aa13.08□□□□□ -0.32
VPS29-211ENST00000553128 ENPP7Q6UWV6 458 aa13.08□□□□□ -0.32
VPS29-211ENST00000553128 GKN2Q86XP6 184 aa13.08□□□□□ -0.32
VPS29-211ENST00000553128 RYBPQ8N488 228 aaPredicted RBP13.08□□□□□ -0.32
VPS29-211ENST00000553128 C9orf43Q8TAL5 461 aaPredicted RBP13.08□□□□□ -0.32
VPS29-211ENST00000553128 FUBP1Q96AE4 644 aaKnown RBP13.08□□□□□ -0.32
VPS29-211ENST00000553128 RAB7BQ96AH8 199 aa13.08□□□□□ -0.32
VPS29-211ENST00000553128 PDXPQ96GD0 296 aa13.08□□□□□ -0.32
VPS29-211ENST00000553128 KLHL32Q96NJ5 620 aa13.08□□□□□ -0.32
VPS29-211ENST00000553128 WRAP53Q9BUR4 548 aaKnown RBP13.08□□□□□ -0.32
VPS29-211ENST00000553128 ATP13A1Q9HD20 1204 aa13.08□□□□□ -0.32
VPS29-211ENST00000553128 OR1A2Q9Y585 309 aa13.08□□□□□ -0.32
VPS29-211ENST00000553128 ANKRD17O75179 2603 aaKnown RBP13.07□□□□□ -0.32
VPS29-211ENST00000553128 KRIT1O00522 736 aa13.07□□□□□ -0.32
VPS29-211ENST00000553128 B4GAT1O43505 415 aa13.07□□□□□ -0.32
VPS29-211ENST00000553128 TM7SF2O76062 418 aa13.07□□□□□ -0.32
VPS29-211ENST00000553128 RASGRP1O95267 797 aa13.07□□□□□ -0.32
VPS29-211ENST00000553128 GLI1P08151 1106 aa13.07□□□□□ -0.32
VPS29-211ENST00000553128 RNF224P0DH78 156 aa13.07□□□□□ -0.32
VPS29-211ENST00000553128 GLB1P16278 677 aa13.07□□□□□ -0.32
VPS29-211ENST00000553128 UGT1A3P35503 534 aa13.07□□□□□ -0.32
VPS29-211ENST00000553128 ACVRL1P37023 503 aa13.07□□□□□ -0.32
VPS29-211ENST00000553128 CD97P48960 835 aa13.07□□□□□ -0.32
VPS29-211ENST00000553128 BLKP51451 505 aa13.07□□□□□ -0.32
VPS29-211ENST00000553128 MLLT10P55197 1068 aa13.07□□□□□ -0.32
VPS29-211ENST00000553128 SRP54P61011 504 aaKnown RBP13.07□□□□□ -0.32
VPS29-211ENST00000553128 FKBP3Q00688 224 aaKnown RBP13.07□□□□□ -0.32
VPS29-211ENST00000553128 B4GALNT1Q00973 533 aa13.07□□□□□ -0.32
VPS29-211ENST00000553128 GCNT1Q02742 428 aa13.07□□□□□ -0.32
VPS29-211ENST00000553128 ARHGAP44Q17R89 818 aa13.07□□□□□ -0.32
VPS29-211ENST00000553128 WSCD2Q2TBF2 565 aa13.07□□□□□ -0.32
VPS29-211ENST00000553128 RETSATQ6NUM9 610 aa13.07□□□□□ -0.32
VPS29-211ENST00000553128 OLFML1Q6UWY5 402 aa13.07□□□□□ -0.32
VPS29-211ENST00000553128 LEKR1Q6ZMV7 388 aa13.07□□□□□ -0.32
VPS29-211ENST00000553128 KRBA2Q6ZNG9 492 aa13.07□□□□□ -0.32
VPS29-211ENST00000553128 PASD1Q8IV76 773 aa13.07□□□□□ -0.32
VPS29-211ENST00000553128 IL22RA1Q8N6P7 574 aa13.07□□□□□ -0.32
VPS29-211ENST00000553128 OR6C4Q8NGE1 309 aa13.07□□□□□ -0.32
VPS29-211ENST00000553128 ABHD17AQ96GS6 310 aa13.07□□□□□ -0.32
VPS29-211ENST00000553128 NUDT22Q9BRQ3 303 aa13.07□□□□□ -0.32
VPS29-211ENST00000553128 GOLPH3LQ9H4A5 285 aa13.07□□□□□ -0.32
VPS29-211ENST00000553128 ASNSD1Q9NWL6 643 aa13.07□□□□□ -0.32
VPS29-211ENST00000553128 LRIT1Q9P2V4 623 aa13.07□□□□□ -0.32
VPS29-211ENST00000553128 LRBAP50851 2863 aa13.07□□□□□ -0.32
VPS29-211ENST00000553128 CELSR2Q9HCU4 2923 aa13.07□□□□□ -0.32
VPS29-211ENST00000553128 CRYBG3Q68DQ2 2970 aa13.06□□□□□ -0.32
VPS29-211ENST00000553128 IGLV3-10A0A075B6K4 115 aa13.06□□□□□ -0.32
VPS29-211ENST00000553128 FAM237AA0A1B0GTK4 181 aa13.06□□□□□ -0.32
VPS29-211ENST00000553128 ILVBLA1L0T0 632 aa13.06□□□□□ -0.32
VPS29-211ENST00000553128 ENO4A6NNW6 628 aa13.06□□□□□ -0.32
VPS29-211ENST00000553128 B4DGG1 531 aa13.06□□□□□ -0.32
VPS29-211ENST00000553128 K7ELQ4 463 aaPredicted RBP13.06□□□□□ -0.32
VPS29-211ENST00000553128 K7EM74 188 aa13.06□□□□□ -0.32
VPS29-211ENST00000553128 PMM2O15305 246 aa13.06□□□□□ -0.32
VPS29-211ENST00000553128 THAP12O43422 761 aa13.06□□□□□ -0.32
VPS29-211ENST00000553128 SRGAP2O75044 1071 aa13.06□□□□□ -0.32
VPS29-211ENST00000553128 DAB1O75553 588 aa13.06□□□□□ -0.32
VPS29-211ENST00000553128 ERBB2P04626 1255 aa13.06□□□□□ -0.32
VPS29-211ENST00000553128 PRKAR1AP10644 381 aa13.06□□□□□ -0.32
VPS29-211ENST00000553128 NR1D1P20393 614 aa13.06□□□□□ -0.32
VPS29-211ENST00000553128 CXCR3P49682 368 aa13.06□□□□□ -0.32
VPS29-211ENST00000553128 ATP1A2P50993 1020 aa13.06□□□□□ -0.32
VPS29-211ENST00000553128 OR1D5P58170 312 aa13.06□□□□□ -0.32
VPS29-211ENST00000553128 HLTFQ14527 1009 aaKnown RBP eCLIP13.06□□□□□ -0.32
VPS29-211ENST00000553128 NFATC4Q14934 902 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms