RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 FBXL19Q6PCT2 694 aa14.28□□□□□ -0.12
PTCH1-226ENST00000553011 BBS12Q6ZW61 710 aa14.28□□□□□ -0.12
PTCH1-226ENST00000553011 BBS5Q8N3I7 341 aa14.28□□□□□ -0.12
PTCH1-226ENST00000553011 DNASE2BQ8WZ79 361 aa14.28□□□□□ -0.12
PTCH1-226ENST00000553011 HAUS1Q96CS2 278 aa14.28□□□□□ -0.12
PTCH1-226ENST00000553011 HES6Q96HZ4 224 aa14.28□□□□□ -0.12
PTCH1-226ENST00000553011 PCDH15Q96QU1 1955 aa14.28□□□□□ -0.12
PTCH1-226ENST00000553011 MGME1Q9BQP7 344 aa14.28□□□□□ -0.12
PTCH1-226ENST00000553011 OSBPL8Q9BZF1 889 aa14.28□□□□□ -0.12
PTCH1-226ENST00000553011 MIR1-1HGQ9H1L0 117 aa14.28□□□□□ -0.12
PTCH1-226ENST00000553011 VPS45Q9NRW7 570 aa14.28□□□□□ -0.12
PTCH1-226ENST00000553011 RBM22Q9NW64 420 aaKnown RBP eCLIP14.28□□□□□ -0.12
PTCH1-226ENST00000553011 KCNK1O00180 336 aa14.27□□□□□ -0.13
PTCH1-226ENST00000553011 SPINT1O43278 529 aa14.27□□□□□ -0.13
PTCH1-226ENST00000553011 ZNF806P0C7X5 589 aa14.27□□□□□ -0.13
PTCH1-226ENST00000553011 CCNB1P14635 433 aa14.27□□□□□ -0.13
PTCH1-226ENST00000553011 MAT2AP31153 395 aaKnown RBP14.27□□□□□ -0.13
PTCH1-226ENST00000553011 CCR5P51681 352 aa14.27□□□□□ -0.13
PTCH1-226ENST00000553011 CCDC15Q0P6D6 951 aa14.27□□□□□ -0.13
PTCH1-226ENST00000553011 AP1B1Q10567 949 aa14.27□□□□□ -0.13
PTCH1-226ENST00000553011 GRM3Q14832 879 aa14.27□□□□□ -0.13
PTCH1-226ENST00000553011 PDK1Q15118 436 aa14.27□□□□□ -0.13
PTCH1-226ENST00000553011 CSRP2Q16527 193 aa14.27□□□□□ -0.13
PTCH1-226ENST00000553011 PEAR1Q5VY43 1037 aaPredicted RBP14.27□□□□□ -0.13
PTCH1-226ENST00000553011 ZSWIM9Q86XI8 627 aa14.27□□□□□ -0.13
PTCH1-226ENST00000553011 KIAA2013Q8IYS2 634 aa14.27□□□□□ -0.13
PTCH1-226ENST00000553011 ZCCHC9Q8N567 271 aaKnown RBP14.27□□□□□ -0.13
PTCH1-226ENST00000553011 UBL4BQ8N7F7 174 aa14.27□□□□□ -0.13
PTCH1-226ENST00000553011 FATE1Q969F0 183 aa14.27□□□□□ -0.13
PTCH1-226ENST00000553011 NUDCD1Q96RS6 583 aa14.27□□□□□ -0.13
PTCH1-226ENST00000553011 TUBGCP5Q96RT8 1024 aa14.27□□□□□ -0.13
PTCH1-226ENST00000553011 ORAI3Q9BRQ5 295 aa14.27□□□□□ -0.13
PTCH1-226ENST00000553011 KDM4CQ9H3R0 1056 aa14.27□□□□□ -0.13
PTCH1-226ENST00000553011 SUV39H2Q9H5I1 410 aa14.27□□□□□ -0.13
PTCH1-226ENST00000553011 ATP13A3Q9H7F0 1226 aa14.27□□□□□ -0.13
PTCH1-226ENST00000553011 EBF2Q9HAK2 575 aa14.27□□□□□ -0.13
PTCH1-226ENST00000553011 NOD2Q9HC29 1040 aa14.27□□□□□ -0.13
PTCH1-226ENST00000553011 PREBQ9HCU5 417 aa14.27□□□□□ -0.13
PTCH1-226ENST00000553011 SCUBE2Q9NQ36 999 aa14.27□□□□□ -0.13
PTCH1-226ENST00000553011 GGT7Q9UJ14 662 aa14.27□□□□□ -0.13
PTCH1-226ENST00000553011 ITM2BQ9Y287 266 aa14.27□□□□□ -0.13
PTCH1-226ENST00000553011 LAMA1P25391 3075 aa14.26□□□□□ -0.13
PTCH1-226ENST00000553011 PPP1R12AO14974 1030 aaPredicted RBP14.26□□□□□ -0.13
PTCH1-226ENST00000553011 RNGTTO60942 597 aaKnown RBP14.26□□□□□ -0.13
PTCH1-226ENST00000553011 JCHAINP01591 159 aa14.26□□□□□ -0.13
PTCH1-226ENST00000553011 HLA-DQB2P05538 268 aa14.26□□□□□ -0.13
PTCH1-226ENST00000553011 TIMP2P16035 220 aa14.26□□□□□ -0.13
PTCH1-226ENST00000553011 ITIH2P19823 946 aa14.26□□□□□ -0.13
PTCH1-226ENST00000553011 SERPINA4P29622 427 aa14.26□□□□□ -0.13
PTCH1-226ENST00000553011 PTPN7P35236 360 aa14.26□□□□□ -0.13
PTCH1-226ENST00000553011 HOXD12P35452 270 aa14.26□□□□□ -0.13
PTCH1-226ENST00000553011 DPP6P42658 865 aa14.26□□□□□ -0.13
PTCH1-226ENST00000553011 NR2C2P49116 596 aa14.26□□□□□ -0.13
PTCH1-226ENST00000553011 AP1S1P61966 158 aa14.26□□□□□ -0.13
PTCH1-226ENST00000553011 BCL2L1Q07817 233 aa14.26□□□□□ -0.13
PTCH1-226ENST00000553011 ITKQ08881 620 aa14.26□□□□□ -0.13
PTCH1-226ENST00000553011 ZBTB17Q13105 803 aa14.26□□□□□ -0.13
PTCH1-226ENST00000553011 TRIM61Q5EBN2 209 aa14.26□□□□□ -0.13
PTCH1-226ENST00000553011 PRR23CQ6ZRP0 262 aa14.26□□□□□ -0.13
PTCH1-226ENST00000553011 ZC3H18Q86VM9 953 aaKnown RBP14.26□□□□□ -0.13
PTCH1-226ENST00000553011 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.26□□□□□ -0.13
PTCH1-226ENST00000553011 C1orf216Q8TAB5 229 aa14.26□□□□□ -0.13
PTCH1-226ENST00000553011 P3H4Q92791 437 aa14.26□□□□□ -0.13
PTCH1-226ENST00000553011 KLK6Q92876 244 aa14.26□□□□□ -0.13
PTCH1-226ENST00000553011 ZNF641Q96N77 438 aaPredicted RBP14.26□□□□□ -0.13
PTCH1-226ENST00000553011 IL12RB2Q99665 862 aa14.26□□□□□ -0.13
PTCH1-226ENST00000553011 SEMA3CQ99985 751 aa14.26□□□□□ -0.13
PTCH1-226ENST00000553011 CEP41Q9BYV8 373 aa14.26□□□□□ -0.13
PTCH1-226ENST00000553011 FSCN3Q9NQT6 498 aa14.26□□□□□ -0.13
PTCH1-226ENST00000553011 SEPT10Q9P0V9 454 aa14.26□□□□□ -0.13
PTCH1-226ENST00000553011 DKK3Q9UBP4 350 aa14.26□□□□□ -0.13
PTCH1-226ENST00000553011 EFR3BQ9Y2G0 817 aa14.26□□□□□ -0.13
PTCH1-226ENST00000553011 TTLL3Q9Y4R7 772 aa14.26□□□□□ -0.13
PTCH1-226ENST00000553011 FADS3Q9Y5Q0 445 aa14.26□□□□□ -0.13
PTCH1-226ENST00000553011 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.26□□□□□ -0.13
PTCH1-226ENST00000553011 CFAP54Q96N23 3096 aa14.26□□□□□ -0.13
PTCH1-226ENST00000553011 TDRD6O60522 2096 aaKnown RBP14.26□□□□□ -0.13
PTCH1-226ENST00000553011 A0A1W2PPC4 97 aa14.25□□□□□ -0.13
PTCH1-226ENST00000553011 A0A1W2PQU0 124 aa14.25□□□□□ -0.13
PTCH1-226ENST00000553011 TSPAN11A1L157 253 aa14.25□□□□□ -0.13
PTCH1-226ENST00000553011 APOC4-APOC2K7ER74 178 aa14.25□□□□□ -0.13
PTCH1-226ENST00000553011 KHNYNO15037 678 aaKnown RBP14.25□□□□□ -0.13
PTCH1-226ENST00000553011 LATO43561 262 aa14.25□□□□□ -0.13
PTCH1-226ENST00000553011 NEBLO76041 1014 aa14.25□□□□□ -0.13
PTCH1-226ENST00000553011 PCDH8O95206 1070 aa14.25□□□□□ -0.13
PTCH1-226ENST00000553011 APOC2P02655 101 aa14.25□□□□□ -0.13
PTCH1-226ENST00000553011 PRKCGP05129 697 aa14.25□□□□□ -0.13
PTCH1-226ENST00000553011 CFIP05156 583 aa14.25□□□□□ -0.13
PTCH1-226ENST00000553011 CD27P26842 260 aa14.25□□□□□ -0.13
PTCH1-226ENST00000553011 CETN2P41208 172 aa14.25□□□□□ -0.13
PTCH1-226ENST00000553011 MAPK8P45983 427 aa14.25□□□□□ -0.13
PTCH1-226ENST00000553011 IRX4P78413 519 aa14.25□□□□□ -0.13
PTCH1-226ENST00000553011 IFI35P80217 286 aaPredicted RBP14.25□□□□□ -0.13
PTCH1-226ENST00000553011 DSC2Q02487 901 aa14.25□□□□□ -0.13
PTCH1-226ENST00000553011 TRAF2Q12933 501 aa14.25□□□□□ -0.13
PTCH1-226ENST00000553011 IHHQ14623 411 aa14.25□□□□□ -0.13
PTCH1-226ENST00000553011 PRKD1Q15139 912 aaPredicted RBP14.25□□□□□ -0.13
PTCH1-226ENST00000553011 DUOXA1Q1HG43 343 aa14.25□□□□□ -0.13
PTCH1-226ENST00000553011 MEI1Q5TIA1 1274 aa14.25□□□□□ -0.13
PTCH1-226ENST00000553011 CCDC181Q5TID7 509 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms