RNA–Protein interactions for RNA: ENST00000550987.5

CPSF6-206, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 4

Gene CPSF6, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-206ENST00000550987 RIPPLY3P57055 190 aa5.66□□□□□ -1.5
CPSF6-206ENST00000550987 RPL7AP62424 266 aaKnown RBP5.66□□□□□ -1.5
CPSF6-206ENST00000550987 EFNB1P98172 346 aa5.66□□□□□ -1.5
CPSF6-206ENST00000550987 B4GALNT1Q00973 533 aa5.66□□□□□ -1.5
CPSF6-206ENST00000550987 MC1RQ01726 317 aa5.66□□□□□ -1.5
CPSF6-206ENST00000550987 GOLGA8DPQ0D2H9 430 aa5.66□□□□□ -1.5
CPSF6-206ENST00000550987 GAB1Q13480 694 aa5.66□□□□□ -1.5
CPSF6-206ENST00000550987 SLC9B1Q4ZJI4 515 aa5.66□□□□□ -1.5
CPSF6-206ENST00000550987 RNASE12Q5GAN4 147 aaKnown RBP5.66□□□□□ -1.5
CPSF6-206ENST00000550987 AARS2Q5JTZ9 985 aaKnown RBP5.66□□□□□ -1.5
CPSF6-206ENST00000550987 CC2D1BQ5T0F9 858 aaKnown RBP5.66□□□□□ -1.5
CPSF6-206ENST00000550987 AKNAD1Q5T1N1 836 aa5.66□□□□□ -1.5
CPSF6-206ENST00000550987 LAIR1Q6GTX8 287 aa5.66□□□□□ -1.5
CPSF6-206ENST00000550987 DLK2Q6UY11 383 aa5.66□□□□□ -1.5
CPSF6-206ENST00000550987 GALNT7Q86SF2 657 aa5.66□□□□□ -1.5
CPSF6-206ENST00000550987 SMARCE1Q969G3 411 aa5.66□□□□□ -1.5
CPSF6-206ENST00000550987 LENG9Q96B70 501 aa5.66□□□□□ -1.5
CPSF6-206ENST00000550987 SMARCAD1Q9H4L7 1026 aa5.66□□□□□ -1.5
CPSF6-206ENST00000550987 SLC32A1Q9H598 525 aa5.66□□□□□ -1.5
CPSF6-206ENST00000550987 HCFC1R1Q9NWW0 138 aa5.66□□□□□ -1.5
CPSF6-206ENST00000550987 EHD2Q9NZN4 543 aa5.66□□□□□ -1.5
CPSF6-206ENST00000550987 MPP6Q9NZW5 540 aa5.66□□□□□ -1.5
CPSF6-206ENST00000550987 PEMTQ9UBM1 199 aa5.66□□□□□ -1.5
CPSF6-206ENST00000550987 LIMA1Q9UHB6 759 aaKnown RBP5.66□□□□□ -1.5
CPSF6-206ENST00000550987 CORO1CQ9ULV4 474 aaPredicted RBP5.66□□□□□ -1.5
CPSF6-206ENST00000550987 DHDHQ9UQ10 334 aa5.66□□□□□ -1.5
CPSF6-206ENST00000550987 TMEM5Q9Y2B1 443 aa5.66□□□□□ -1.5
CPSF6-206ENST00000550987 AFDNP55196 1824 aaKnown RBP5.66□□□□□ -1.5
CPSF6-206ENST00000550987 MAP2P11137 1827 aaKnown RBP5.65□□□□□ -1.5
CPSF6-206ENST00000550987 C16orf96A6NNT2 1141 aa5.65□□□□□ -1.5
CPSF6-206ENST00000550987 CEP104O60308 925 aa5.65□□□□□ -1.5
CPSF6-206ENST00000550987 PLOD3O60568 738 aa5.65□□□□□ -1.5
CPSF6-206ENST00000550987 CBX6O95503 412 aa5.65□□□□□ -1.5
CPSF6-206ENST00000550987 MT-CO3P00414 261 aa5.65□□□□□ -1.5
CPSF6-206ENST00000550987 ENO1P06733 434 aaKnown RBP5.65□□□□□ -1.5
CPSF6-206ENST00000550987 CHRM4P08173 479 aa5.65□□□□□ -1.5
CPSF6-206ENST00000550987 AKR1B1P15121 316 aa5.65□□□□□ -1.5
CPSF6-206ENST00000550987 SKIV2L2P42285 1042 aaKnown RBP5.65□□□□□ -1.5
CPSF6-206ENST00000550987 SNX16P57768 344 aa5.65□□□□□ -1.5
CPSF6-206ENST00000550987 CREB5Q02930 508 aa5.65□□□□□ -1.5
CPSF6-206ENST00000550987 PUM1Q14671 1186 aaKnown RBP eCLIP5.65□□□□□ -1.5
CPSF6-206ENST00000550987 KCNB1Q14721 858 aa5.65□□□□□ -1.5
CPSF6-206ENST00000550987 SLC18A3Q16572 532 aa5.65□□□□□ -1.5
CPSF6-206ENST00000550987 PFKFB3Q16875 520 aaPredicted RBP5.65□□□□□ -1.5
CPSF6-206ENST00000550987 FAM133BQ5BKY9 247 aaKnown RBP5.65□□□□□ -1.5
CPSF6-206ENST00000550987 SPDYAQ5MJ70 313 aa5.65□□□□□ -1.5
CPSF6-206ENST00000550987 KIAA0895LQ68EN5 471 aa5.65□□□□□ -1.5
CPSF6-206ENST00000550987 VSTM1Q6UX27 236 aa5.65□□□□□ -1.5
CPSF6-206ENST00000550987 SERPINA13PQ6UXR4 307 aa5.65□□□□□ -1.5
CPSF6-206ENST00000550987 DCDC5Q6ZRR9 648 aa5.65□□□□□ -1.5
CPSF6-206ENST00000550987 SLC29A4Q7RTT9 530 aa5.65□□□□□ -1.5
CPSF6-206ENST00000550987 RNF144BQ7Z419 303 aa5.65□□□□□ -1.5
CPSF6-206ENST00000550987 ZNF804AQ7Z570 1209 aa5.65□□□□□ -1.5
CPSF6-206ENST00000550987 PEG10Q86TG7 708 aaKnown RBP5.65□□□□□ -1.5
CPSF6-206ENST00000550987 CCDC105Q8IYK2 499 aa5.65□□□□□ -1.5
CPSF6-206ENST00000550987 TTC9BQ8N6N2 239 aa5.65□□□□□ -1.5
CPSF6-206ENST00000550987 LSMEM1Q8N8F7 131 aa5.65□□□□□ -1.5
CPSF6-206ENST00000550987 TERB1Q8NA31 727 aa5.65□□□□□ -1.5
CPSF6-206ENST00000550987 DNAAF1Q8NEP3 725 aa5.65□□□□□ -1.5
CPSF6-206ENST00000550987 ACTRT2Q8TDY3 377 aa5.65□□□□□ -1.5
CPSF6-206ENST00000550987 CREB3L4Q8TEY5 395 aa5.65□□□□□ -1.5
CPSF6-206ENST00000550987 RAB40AQ8WXH6 277 aa5.65□□□□□ -1.5
CPSF6-206ENST00000550987 HSPH1Q92598 858 aa5.65□□□□□ -1.5
CPSF6-206ENST00000550987 DVL3Q92997 716 aaPredicted RBP5.65□□□□□ -1.5
CPSF6-206ENST00000550987 KLHL29Q96CT2 875 aa5.65□□□□□ -1.5
CPSF6-206ENST00000550987 FYTTD1Q96QD9 318 aaKnown RBP5.65□□□□□ -1.5
CPSF6-206ENST00000550987 SERINC2Q96SA4 455 aa5.65□□□□□ -1.5
CPSF6-206ENST00000550987 CADM1Q9BY67 442 aaKnown RBP5.65□□□□□ -1.5
CPSF6-206ENST00000550987 BRF2Q9HAW0 419 aa5.65□□□□□ -1.5
CPSF6-206ENST00000550987 ARL8BQ9NVJ2 186 aa5.65□□□□□ -1.5
CPSF6-206ENST00000550987 BABAM1Q9NWV8 329 aa5.65□□□□□ -1.5
CPSF6-206ENST00000550987 ZDHHC7Q9NXF8 308 aa5.65□□□□□ -1.5
CPSF6-206ENST00000550987 ARL15Q9NXU5 204 aa5.65□□□□□ -1.5
CPSF6-206ENST00000550987 RPS6KA6Q9UK32 745 aa5.65□□□□□ -1.5
CPSF6-206ENST00000550987 KCNE2Q9Y6J6 123 aa5.65□□□□□ -1.5
CPSF6-206ENST00000550987 ZZEF1O43149 2961 aa5.65□□□□□ -1.51
CPSF6-206ENST00000550987 KDM3AQ9Y4C1 1321 aa5.65□□□□□ -1.51
CPSF6-206ENST00000550987 TEX15Q9BXT5 2789 aa5.65□□□□□ -1.51
CPSF6-206ENST00000550987 C2CD3Q4AC94 2353 aa5.64□□□□□ -1.51
CPSF6-206ENST00000550987 WDR87Q6ZQQ6 2873 aa5.64□□□□□ -1.51
CPSF6-206ENST00000550987 SYNDIG1LA6NDD5 238 aa5.64□□□□□ -1.51
CPSF6-206ENST00000550987 NPIPB15A6NHN6 443 aaPredicted RBP5.64□□□□□ -1.51
CPSF6-206ENST00000550987 LINC00473A8K010 186 aa5.64□□□□□ -1.51
CPSF6-206ENST00000550987 EIF3CLB5ME19 914 aaKnown RBP5.64□□□□□ -1.51
CPSF6-206ENST00000550987 PROB1E7EW31 1015 aa5.64□□□□□ -1.51
CPSF6-206ENST00000550987 PRYO14603 147 aa5.64□□□□□ -1.51
CPSF6-206ENST00000550987 VILLO15195 856 aa5.64□□□□□ -1.51
CPSF6-206ENST00000550987 TNFSF14O43557 240 aa5.64□□□□□ -1.51
CPSF6-206ENST00000550987 SEC14L2O76054 403 aa5.64□□□□□ -1.51
CPSF6-206ENST00000550987 CNTN5O94779 1100 aa5.64□□□□□ -1.51
CPSF6-206ENST00000550987 ADH4P08319 380 aa5.64□□□□□ -1.51
CPSF6-206ENST00000550987 APEHP13798 732 aaKnown RBP5.64□□□□□ -1.51
CPSF6-206ENST00000550987 PORP16435 677 aaPredicted RBP5.64□□□□□ -1.51
CPSF6-206ENST00000550987 CD72P21854 359 aa5.64□□□□□ -1.51
CPSF6-206ENST00000550987 TGM2P21980 687 aa5.64□□□□□ -1.51
CPSF6-206ENST00000550987 SFPQP23246 707 aaKnown RBP eCLIP5.64□□□□□ -1.51
CPSF6-206ENST00000550987 BSGP35613 385 aa5.64□□□□□ -1.51
CPSF6-206ENST00000550987 AVPR1BP47901 424 aa5.64□□□□□ -1.51
CPSF6-206ENST00000550987 POU5F1Q01860 360 aaKnown RBP5.64□□□□□ -1.51
CPSF6-206ENST00000550987 CALD1Q05682 793 aaKnown RBP5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms