RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 SLC12A8A0AV02 714 aa18.7■□□□□ 0.58
PRPF40B-208ENST00000548436 MTMR11A4FU01 709 aa18.7■□□□□ 0.58
PRPF40B-208ENST00000548436 OR6C75A6NL08 312 aa18.7■□□□□ 0.58
PRPF40B-208ENST00000548436 DRGXA6NNA5 263 aa18.7■□□□□ 0.58
PRPF40B-208ENST00000548436 GRID2O43424 1007 aa18.7■□□□□ 0.58
PRPF40B-208ENST00000548436 AOC2O75106 756 aa18.7■□□□□ 0.58
PRPF40B-208ENST00000548436 ZMPSTE24O75844 475 aa18.7■□□□□ 0.58
PRPF40B-208ENST00000548436 IGLV3-27P01718 113 aa18.7■□□□□ 0.58
PRPF40B-208ENST00000548436 CPB1P15086 417 aa18.7■□□□□ 0.58
PRPF40B-208ENST00000548436 CD1EP15812 388 aa18.7■□□□□ 0.58
PRPF40B-208ENST00000548436 TFEBP19484 476 aa18.7■□□□□ 0.58
PRPF40B-208ENST00000548436 KLF10Q13118 480 aa18.7■□□□□ 0.58
PRPF40B-208ENST00000548436 MGAT5BQ3V5L5 792 aa18.7■□□□□ 0.58
PRPF40B-208ENST00000548436 C1orf146Q5VVC0 180 aa18.7■□□□□ 0.58
PRPF40B-208ENST00000548436 RNF19BQ6ZMZ0 732 aa18.7■□□□□ 0.58
PRPF40B-208ENST00000548436 LRRC74BQ6ZQY2 392 aa18.7■□□□□ 0.58
PRPF40B-208ENST00000548436 FRMD7Q6ZUT3 714 aa18.7■□□□□ 0.58
PRPF40B-208ENST00000548436 MYLK4Q86YV6 388 aaPredicted RBP18.7■□□□□ 0.58
PRPF40B-208ENST00000548436 OR13J1Q8NGT2 312 aa18.7■□□□□ 0.58
PRPF40B-208ENST00000548436 HEXDCQ8WVB3 486 aa18.7■□□□□ 0.58
PRPF40B-208ENST00000548436 ZNF333Q96JL9 665 aa18.7■□□□□ 0.58
PRPF40B-208ENST00000548436 RANBP9Q96S59 729 aa18.7■□□□□ 0.58
PRPF40B-208ENST00000548436 NDNQ99608 321 aa18.7■□□□□ 0.58
PRPF40B-208ENST00000548436 SEPT5Q99719 369 aaPredicted RBP18.7■□□□□ 0.58
PRPF40B-208ENST00000548436 OLFM1Q99784 485 aa18.7■□□□□ 0.58
PRPF40B-208ENST00000548436 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.7■□□□□ 0.58
PRPF40B-208ENST00000548436 TLR8Q9NR97 1041 aaKnown RBP18.7■□□□□ 0.58
PRPF40B-208ENST00000548436 VPS45Q9NRW7 570 aa18.7■□□□□ 0.58
PRPF40B-208ENST00000548436 CHD5Q8TDI0 1954 aa18.7■□□□□ 0.58
PRPF40B-208ENST00000548436 ENPP3O14638 875 aa18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 HDAC3O15379 428 aa18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 NVLO15381 856 aaKnown RBP18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 GJB3O75712 270 aa18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 RTN3O95197 1032 aaPredicted RBP18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 ATP6V1C1P21283 382 aa18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 FGFR3P22607 806 aa18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 POU4F1Q01851 419 aa18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 FSCBQ5H9T9 825 aa18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 C6orf163Q5TEZ5 329 aa18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 METTL21CQ5VZV1 264 aa18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 TRIM68Q6AZZ1 485 aa18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 ARRDC2Q8TBH0 407 aa18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 DNAJC9Q8WXX5 260 aa18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 CASD1Q96PB1 797 aa18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 STARD7Q9NQZ5 370 aa18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 OLA1Q9NTK5 396 aaKnown RBP18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 A0A087X1B8 175 aa18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 NEMP1O14524 444 aa18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 NBNO60934 754 aa18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 COX4I1P13073 169 aa18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 ETFBP38117 255 aa18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 ABL2P42684 1182 aa18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 PRKAA1Q13131 559 aa18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 GPNMBQ14956 572 aa18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 POLD3Q15054 466 aaPredicted RBP18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 SEL1L3Q68CR1 1132 aa18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 LHX8Q68G74 356 aa18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 NADSYN1Q6IA69 706 aa18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 KIAA0408Q6ZU52 694 aa18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 LRRC8DQ7L1W4 858 aa18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 ABI1Q8IZP0 508 aa18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 TXNDC5Q8NBS9 432 aaKnown RBP18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 TADA1Q96BN2 335 aa18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 RPRD1AQ96P16 312 aaPredicted RBP18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 MRPL46Q9H2W6 279 aaKnown RBP18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 CCSER2Q9H7U1 834 aa18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 IGSF5Q9NSI5 407 aa18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 DONSONQ9NYP3 566 aa18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 CAMSAP3Q9P1Y5 1249 aaPredicted RBP18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 UXTQ9UBK9 157 aaPredicted RBP18.69■□□□□ 0.58
PRPF40B-208ENST00000548436 CCL22O00626 93 aa18.68■□□□□ 0.58
PRPF40B-208ENST00000548436 RAMP2O60895 175 aa18.68■□□□□ 0.58
PRPF40B-208ENST00000548436 SORBS2O94875 1100 aaKnown RBP18.68■□□□□ 0.58
PRPF40B-208ENST00000548436 ITGAXP20702 1163 aa18.68■□□□□ 0.58
PRPF40B-208ENST00000548436 EPHA3P29320 983 aa18.68■□□□□ 0.58
PRPF40B-208ENST00000548436 ACVRL1P37023 503 aa18.68■□□□□ 0.58
PRPF40B-208ENST00000548436 LEPRP48357 1165 aaKnown RBP18.68■□□□□ 0.58
PRPF40B-208ENST00000548436 SLC11A1P49279 550 aa18.68■□□□□ 0.58
PRPF40B-208ENST00000548436 PSEN1P49768 467 aa18.68■□□□□ 0.58
PRPF40B-208ENST00000548436 TNK2Q07912 1038 aa18.68■□□□□ 0.58
PRPF40B-208ENST00000548436 TSNAXIP1Q2TAA8 658 aa18.68■□□□□ 0.58
PRPF40B-208ENST00000548436 MUM1Q2TAK8 710 aa18.68■□□□□ 0.58
PRPF40B-208ENST00000548436 LSM12Q3MHD2 195 aaKnown RBP18.68■□□□□ 0.58
PRPF40B-208ENST00000548436 CMPK2Q5EBM0 449 aa18.68■□□□□ 0.58
PRPF40B-208ENST00000548436 SIRPB2Q5JXA9 342 aa18.68■□□□□ 0.58
PRPF40B-208ENST00000548436 DBF4BQ8NFT6 615 aa18.68■□□□□ 0.58
PRPF40B-208ENST00000548436 CD99L2Q8TCZ2 262 aa18.68■□□□□ 0.58
PRPF40B-208ENST00000548436 SGF29Q96ES7 293 aa18.68■□□□□ 0.58
PRPF40B-208ENST00000548436 NUF2Q9BZD4 464 aa18.68■□□□□ 0.58
PRPF40B-208ENST00000548436 CXorf56Q9H5V9 222 aa18.68■□□□□ 0.58
PRPF40B-208ENST00000548436 CYP4F11Q9HBI6 524 aa18.68■□□□□ 0.58
PRPF40B-208ENST00000548436 PCDHB7Q9Y5E2 793 aa18.68■□□□□ 0.58
PRPF40B-208ENST00000548436 MROH6A6NGR9 719 aa18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 NT5C1B-RDH14C9J2C7 533 aa18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 ALDH2P05091 517 aa18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 JUNP05412 331 aaKnown RBP18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 COL6A1P12109 1028 aa18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 PRDX6P30041 224 aa18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 PBX3P40426 434 aa18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 ARSDP51689 593 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms