RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 MRPS18BQ9Y676 258 aaKnown RBP4.87□□□□□ -1.63
LIMS1-214ENST00000542845 LRBAP50851 2863 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 CSMD1Q96PZ7 3565 aa4.87□□□□□ -1.63
LIMS1-214ENST00000542845 IGLON5A6NGN9 336 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 H3BQV1 296 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 RNF103O00237 685 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 CAPN5O15484 640 aaPredicted RBP4.86□□□□□ -1.63
LIMS1-214ENST00000542845 LATS1O95835 1130 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 LDLRP01130 860 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 C4BPAP04003 597 aaKnown RBP4.86□□□□□ -1.63
LIMS1-214ENST00000542845 GPC1P35052 558 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 HOXD13P35453 343 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 EIF4A3P38919 411 aaKnown RBP4.86□□□□□ -1.63
LIMS1-214ENST00000542845 PIK3CAP42336 1068 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 ASPAP45381 313 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 DNA2P51530 1060 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 RPS21P63220 83 aaKnown RBP4.86□□□□□ -1.63
LIMS1-214ENST00000542845 DLG4P78352 724 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 HMGN5P82970 282 aaKnown RBP4.86□□□□□ -1.63
LIMS1-214ENST00000542845 SULT2A1Q06520 285 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 ZFP36L1Q07352 338 aaKnown RBP4.86□□□□□ -1.63
LIMS1-214ENST00000542845 ADIGQ0VDE8 80 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 ELOCQ15369 112 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 INPP5JQ15735 1006 aaPredicted RBP4.86□□□□□ -1.63
LIMS1-214ENST00000542845 ZXDCQ2QGD7 858 aaPredicted RBP4.86□□□□□ -1.63
LIMS1-214ENST00000542845 PRR30Q53SZ7 412 aaPredicted RBP4.86□□□□□ -1.63
LIMS1-214ENST00000542845 MS4A13Q5J8X5 152 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 EFHC2Q5JST6 749 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 MEI1Q5TIA1 1274 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 RAP1GAP2Q684P5 730 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 TCTN3Q6NUS6 607 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 KYAT3Q6YP21 454 aaKnown RBP4.86□□□□□ -1.63
LIMS1-214ENST00000542845 ERN2Q76MJ5 926 aaKnown RBP4.86□□□□□ -1.63
LIMS1-214ENST00000542845 TIPARPQ7Z3E1 657 aaKnown RBP4.86□□□□□ -1.63
LIMS1-214ENST00000542845 VPS36Q86VN1 386 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 CHSY1Q86X52 802 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 GKN2Q86XP6 184 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 FAM129CQ86XR2 697 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 SFTPA2Q8IWL1 248 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 SLC34A3Q8N130 599 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 SIX6OS1Q8N1H7 587 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 LINC00528Q8N1L1 170 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 ATP11CQ8NB49 1132 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 CHST14Q8NCH0 376 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 UBA3Q8TBC4 463 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 ERCC4Q92889 916 aaPredicted RBP4.86□□□□□ -1.63
LIMS1-214ENST00000542845 FAM131CQ96AQ9 280 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 SLC45A3Q96JT2 553 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 SPATA32Q96LK8 384 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 CEP63Q96MT8 703 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 CTRCQ99895 268 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 LLPHQ9BRT6 129 aaKnown RBP4.86□□□□□ -1.63
LIMS1-214ENST00000542845 CDH19Q9H159 772 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 TNKS2Q9H2K2 1166 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 MMRN2Q9H8L6 949 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 GPAMQ9HCL2 828 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 AGPAT3Q9NRZ7 376 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 FAM8A1Q9UBU6 413 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 TLK1Q9UKI8 766 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 KCNMB2Q9Y691 235 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 POLQO75417 2590 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 SPENQ96T58 3664 aaKnown RBP4.86□□□□□ -1.63
LIMS1-214ENST00000542845 CENPEQ02224 2701 aa4.86□□□□□ -1.63
LIMS1-214ENST00000542845 CHD5Q8TDI0 1954 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 MED13LQ71F56 2210 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 A8MU76 341 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 B4DGG1 531 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 IQCJ-SCHIP1C9J366 451 aaPredicted RBP4.85□□□□□ -1.63
LIMS1-214ENST00000542845 K7ERQ8 282 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 ALOX15BO15296 676 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 EIF3DO15371 548 aaKnown RBP eCLIP4.85□□□□□ -1.63
LIMS1-214ENST00000542845 TGFB1I1O43294 461 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 EPB41L2O43491 1005 aaKnown RBP4.85□□□□□ -1.63
LIMS1-214ENST00000542845 KATNA1O75449 491 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 DNAJB5O75953 348 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 STK10O94804 968 aaKnown RBP4.85□□□□□ -1.63
LIMS1-214ENST00000542845 NADKO95544 446 aaPredicted RBP4.85□□□□□ -1.63
LIMS1-214ENST00000542845 HLA-DRAP01903 254 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 SNRPB2P08579 225 aaKnown RBP4.85□□□□□ -1.63
LIMS1-214ENST00000542845 ALPIP09923 528 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 RHOQP17081 205 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 TACR2P21452 398 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 CSTF2P33240 577 aaKnown RBP eCLIP4.85□□□□□ -1.63
LIMS1-214ENST00000542845 STAT6P42226 847 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 RECQLP46063 649 aaPredicted RBP4.85□□□□□ -1.63
LIMS1-214ENST00000542845 NOP2P46087 812 aaKnown RBP4.85□□□□□ -1.63
LIMS1-214ENST00000542845 RGS7P49802 495 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 NEK3P51956 506 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 AP3M2P53677 418 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 OR1D5P58170 312 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 MC1RQ01726 317 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 POU4F2Q12837 409 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 BIRC2Q13490 618 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 GOLGA7BQ2TAP0 167 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 RAB41Q5JT25 222 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 SNAP47Q5SQN1 464 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 DCAF12Q5T6F0 453 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 ANKS6Q68DC2 871 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 PM20D1Q6GTS8 502 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 KIAA1161Q6NSJ0 714 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms