RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 PDZD8Q8NEN9 1154 aa13.9□□□□□ -0.18
RTN3-210ENST00000540798 NSMCE1Q8WV22 266 aa13.9□□□□□ -0.18
RTN3-210ENST00000540798 SCLYQ96I15 445 aa13.9□□□□□ -0.18
RTN3-210ENST00000540798 GATA5Q9BWX5 397 aaPredicted RBP13.9□□□□□ -0.18
RTN3-210ENST00000540798 C1orf21Q9H246 121 aa13.9□□□□□ -0.18
RTN3-210ENST00000540798 TASP1Q9H6P5 420 aa13.9□□□□□ -0.18
RTN3-210ENST00000540798 DNMT3LQ9UJW3 386 aa13.9□□□□□ -0.18
RTN3-210ENST00000540798 OGDHLQ9ULD0 1010 aa13.9□□□□□ -0.18
RTN3-210ENST00000540798 PLA2G4CQ9UP65 541 aa13.9□□□□□ -0.18
RTN3-210ENST00000540798 GYG2O15488 501 aa13.9□□□□□ -0.18
RTN3-210ENST00000540798 ACSL4O60488 711 aa13.9□□□□□ -0.18
RTN3-210ENST00000540798 CCNG1P51959 295 aa13.9□□□□□ -0.18
RTN3-210ENST00000540798 DLG1Q12959 904 aa13.9□□□□□ -0.18
RTN3-210ENST00000540798 USP41Q3LFD5 358 aa13.9□□□□□ -0.18
RTN3-210ENST00000540798 LRRC8EQ6NSJ5 796 aa13.9□□□□□ -0.18
RTN3-210ENST00000540798 EPGNQ6UW88 154 aa13.9□□□□□ -0.18
RTN3-210ENST00000540798 RAPH1Q70E73 1250 aa13.9□□□□□ -0.18
RTN3-210ENST00000540798 KDELC2Q7Z4H8 507 aa13.9□□□□□ -0.18
RTN3-210ENST00000540798 SLC25A41Q8N5S1 370 aa13.9□□□□□ -0.18
RTN3-210ENST00000540798 KCTD4Q8WVF5 259 aa13.9□□□□□ -0.18
RTN3-210ENST00000540798 DRC3Q9H069 523 aa13.9□□□□□ -0.18
RTN3-210ENST00000540798 ACOT9Q9Y305 439 aa13.9□□□□□ -0.18
RTN3-210ENST00000540798 L3MBTL1Q9Y468 752 aa13.9□□□□□ -0.18
RTN3-210ENST00000540798 A0A087X1B8 175 aa13.9□□□□□ -0.18
RTN3-210ENST00000540798 TK2O00142 265 aa13.9□□□□□ -0.18
RTN3-210ENST00000540798 MUSKO15146 869 aa13.9□□□□□ -0.18
RTN3-210ENST00000540798 KLHL2O95198 593 aa13.9□□□□□ -0.18
RTN3-210ENST00000540798 STMN1P16949 149 aa13.9□□□□□ -0.18
RTN3-210ENST00000540798 HOXD9P28356 352 aaPredicted RBP13.9□□□□□ -0.18
RTN3-210ENST00000540798 PEX19P40855 299 aa13.9□□□□□ -0.18
RTN3-210ENST00000540798 NUMBP49757 651 aa13.9□□□□□ -0.18
RTN3-210ENST00000540798 ALDH18A1P54886 795 aaKnown RBP13.9□□□□□ -0.18
RTN3-210ENST00000540798 TMPRSS6Q8IU80 811 aa13.9□□□□□ -0.18
RTN3-210ENST00000540798 FSTL5Q8N475 847 aaPredicted RBP13.9□□□□□ -0.18
RTN3-210ENST00000540798 ZNF781Q8N8C0 355 aa13.9□□□□□ -0.18
RTN3-210ENST00000540798 CFAP61Q8NHU2 1237 aa13.9□□□□□ -0.18
RTN3-210ENST00000540798 CALML6Q8TD86 181 aa13.9□□□□□ -0.18
RTN3-210ENST00000540798 SREK1Q8WXA9 508 aaKnown RBP13.9□□□□□ -0.18
RTN3-210ENST00000540798 PEX13Q92968 403 aa13.9□□□□□ -0.18
RTN3-210ENST00000540798 RILPQ96NA2 401 aa13.9□□□□□ -0.18
RTN3-210ENST00000540798 OMDQ99983 421 aa13.9□□□□□ -0.18
RTN3-210ENST00000540798 RNPEPL1Q9HAU8 725 aa13.9□□□□□ -0.18
RTN3-210ENST00000540798 RUVBL2Q9Y230 463 aaKnown RBP13.9□□□□□ -0.18
RTN3-210ENST00000540798 ZNF840PA6NDX5 716 aa13.89□□□□□ -0.19
RTN3-210ENST00000540798 PRR5-ARHGAP8B1AHC4 643 aa13.89□□□□□ -0.19
RTN3-210ENST00000540798 F5H5T6 163 aa13.89□□□□□ -0.19
RTN3-210ENST00000540798 SLC7A4O43246 635 aa13.89□□□□□ -0.19
RTN3-210ENST00000540798 EPOP01588 193 aa13.89□□□□□ -0.19
RTN3-210ENST00000540798 HMGA1P17096 107 aaKnown RBP13.89□□□□□ -0.19
RTN3-210ENST00000540798 ATP5C1P36542 298 aaKnown RBP13.89□□□□□ -0.19
RTN3-210ENST00000540798 TUFMP49411 452 aaKnown RBP13.89□□□□□ -0.19
RTN3-210ENST00000540798 RAP1GDS1P52306 607 aa13.89□□□□□ -0.19
RTN3-210ENST00000540798 HK2P52789 917 aa13.89□□□□□ -0.19
RTN3-210ENST00000540798 ARHGAP8P85298 464 aa13.89□□□□□ -0.19
RTN3-210ENST00000540798 SEPT6Q14141 434 aa13.89□□□□□ -0.19
RTN3-210ENST00000540798 UBAP2LQ14157 1087 aaKnown RBP13.89□□□□□ -0.19
RTN3-210ENST00000540798 TSNAXIP1Q2TAA8 658 aa13.89□□□□□ -0.19
RTN3-210ENST00000540798 RFWD3Q6PCD5 774 aa13.89□□□□□ -0.19
RTN3-210ENST00000540798 FEM1CQ96JP0 617 aa13.89□□□□□ -0.19
RTN3-210ENST00000540798 MYRFLQ96LU7 910 aa13.89□□□□□ -0.19
RTN3-210ENST00000540798 POLR1EQ9GZS1 481 aaKnown RBP13.89□□□□□ -0.19
RTN3-210ENST00000540798 MAGEH1Q9H213 219 aa13.89□□□□□ -0.19
RTN3-210ENST00000540798 MFSD1Q9H3U5 465 aa13.89□□□□□ -0.19
RTN3-210ENST00000540798 UXTQ9UBK9 157 aaPredicted RBP13.89□□□□□ -0.19
RTN3-210ENST00000540798 APOBEC2Q9Y235 224 aaKnown RBP13.89□□□□□ -0.19
RTN3-210ENST00000540798 KIAA1671Q9BY89 1806 aa13.89□□□□□ -0.19
RTN3-210ENST00000540798 LDB2O43679 373 aa13.89□□□□□ -0.19
RTN3-210ENST00000540798 MAGEC1O60732 1142 aa13.89□□□□□ -0.19
RTN3-210ENST00000540798 WISP3O95389 354 aaPredicted RBP13.89□□□□□ -0.19
RTN3-210ENST00000540798 ENO1P06733 434 aaKnown RBP13.89□□□□□ -0.19
RTN3-210ENST00000540798 AVPR1AP37288 418 aa13.89□□□□□ -0.19
RTN3-210ENST00000540798 APLP1P51693 650 aa13.89□□□□□ -0.19
RTN3-210ENST00000540798 PGGT1BP53609 377 aa13.89□□□□□ -0.19
RTN3-210ENST00000540798 TAS2R39P59534 338 aa13.89□□□□□ -0.19
RTN3-210ENST00000540798 ITKQ08881 620 aa13.89□□□□□ -0.19
RTN3-210ENST00000540798 LMNTD2Q8IXW0 634 aa13.89□□□□□ -0.19
RTN3-210ENST00000540798 LGI2Q8N0V4 545 aa13.89□□□□□ -0.19
RTN3-210ENST00000540798 AURKAO14965 403 aa13.88□□□□□ -0.19
RTN3-210ENST00000540798 PQBP1O60828 265 aaKnown RBP13.88□□□□□ -0.19
RTN3-210ENST00000540798 ABLIM3O94929 683 aa13.88□□□□□ -0.19
RTN3-210ENST00000540798 GNAZP19086 355 aa13.88□□□□□ -0.19
RTN3-210ENST00000540798 VEGFBP49765 207 aa13.88□□□□□ -0.19
RTN3-210ENST00000540798 CLCN5P51795 746 aa13.88□□□□□ -0.19
RTN3-210ENST00000540798 ZNF460Q14592 562 aa13.88□□□□□ -0.19
RTN3-210ENST00000540798 FBXO27Q8NI29 283 aa13.88□□□□□ -0.19
RTN3-210ENST00000540798 PLD4Q96BZ4 506 aa13.88□□□□□ -0.19
RTN3-210ENST00000540798 IGSF21Q96ID5 467 aa13.88□□□□□ -0.19
RTN3-210ENST00000540798 HIPK3Q9H422 1215 aa13.88□□□□□ -0.19
RTN3-210ENST00000540798 IGSF5Q9NSI5 407 aa13.88□□□□□ -0.19
RTN3-210ENST00000540798 CPSF2Q9P2I0 782 aaKnown RBP13.88□□□□□ -0.19
RTN3-210ENST00000540798 NKX1-2Q9UD57 310 aaPredicted RBP13.88□□□□□ -0.19
RTN3-210ENST00000540798 AFF4Q9UHB7 1163 aaKnown RBP13.88□□□□□ -0.19
RTN3-210ENST00000540798 RIMKLBQ9ULI2 386 aa13.88□□□□□ -0.19
RTN3-210ENST00000540798 OBSL1O75147 1896 aa13.88□□□□□ -0.19
RTN3-210ENST00000540798 TTC24A2A3L6 582 aaPredicted RBP13.88□□□□□ -0.19
RTN3-210ENST00000540798 SEC24AO95486 1093 aa13.88□□□□□ -0.19
RTN3-210ENST00000540798 CDH4P55283 916 aa13.88□□□□□ -0.19
RTN3-210ENST00000540798 E2F5Q15329 346 aa13.88□□□□□ -0.19
RTN3-210ENST00000540798 ZNF789Q5FWF6 425 aa13.88□□□□□ -0.19
RTN3-210ENST00000540798 CNSTQ6PJW8 725 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms