RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 AP1M1Q9BXS5 423 aa13.14□□□□□ -0.31
CCDC42-202ENST00000539522 NEUROG2Q9H2A3 272 aa13.14□□□□□ -0.31
CCDC42-202ENST00000539522 FBRSQ9HAH7 460 aa13.14□□□□□ -0.31
CCDC42-202ENST00000539522 SEPT10Q9P0V9 454 aa13.14□□□□□ -0.31
CCDC42-202ENST00000539522 GGT7Q9UJ14 662 aa13.14□□□□□ -0.31
CCDC42-202ENST00000539522 NEU2Q9Y3R4 380 aa13.14□□□□□ -0.31
CCDC42-202ENST00000539522 MUC6Q6W4X9 2439 aa13.14□□□□□ -0.31
CCDC42-202ENST00000539522 DNAH14Q0VDD8 3507 aa13.14□□□□□ -0.31
CCDC42-202ENST00000539522 F5H423 210 aaPredicted RBP13.13□□□□□ -0.31
CCDC42-202ENST00000539522 HTRA2O43464 458 aaPredicted RBP13.13□□□□□ -0.31
CCDC42-202ENST00000539522 TUBBP07437 444 aa13.13□□□□□ -0.31
CCDC42-202ENST00000539522 PDHA1P08559 390 aa13.13□□□□□ -0.31
CCDC42-202ENST00000539522 NFKB1P19838 968 aa13.13□□□□□ -0.31
CCDC42-202ENST00000539522 ZNF235Q14590 738 aa13.13□□□□□ -0.31
CCDC42-202ENST00000539522 CCNG2Q16589 344 aa13.13□□□□□ -0.31
CCDC42-202ENST00000539522 ERCC6LQ2NKX8 1250 aa13.13□□□□□ -0.31
CCDC42-202ENST00000539522 LRRC73Q5JTD7 316 aa13.13□□□□□ -0.31
CCDC42-202ENST00000539522 TEX35Q5T0J7 233 aa13.13□□□□□ -0.31
CCDC42-202ENST00000539522 DRICH1Q6PGQ1 229 aaPredicted RBP13.13□□□□□ -0.31
CCDC42-202ENST00000539522 GDPD4Q6W3E5 623 aa13.13□□□□□ -0.31
CCDC42-202ENST00000539522 BZW1Q7L1Q6 419 aaKnown RBP13.13□□□□□ -0.31
CCDC42-202ENST00000539522 KLHDC8BQ8IXV7 354 aa13.13□□□□□ -0.31
CCDC42-202ENST00000539522 FAM71DQ8N9W8 422 aa13.13□□□□□ -0.31
CCDC42-202ENST00000539522 C12orf50Q8NA57 414 aaPredicted RBP13.13□□□□□ -0.31
CCDC42-202ENST00000539522 TTC13Q8NBP0 860 aa13.13□□□□□ -0.31
CCDC42-202ENST00000539522 CCDC110Q8TBZ0 833 aa13.13□□□□□ -0.31
CCDC42-202ENST00000539522 KLHL32Q96NJ5 620 aa13.13□□□□□ -0.31
CCDC42-202ENST00000539522 MLPHQ9BV36 600 aaPredicted RBP13.13□□□□□ -0.31
CCDC42-202ENST00000539522 GLOD4Q9HC38 313 aa13.13□□□□□ -0.31
CCDC42-202ENST00000539522 AMACRQ9UHK6 382 aa13.13□□□□□ -0.31
CCDC42-202ENST00000539522 CYP8B1Q9UNU6 501 aa13.13□□□□□ -0.31
CCDC42-202ENST00000539522 PCDHGC4Q9Y5F7 938 aa13.13□□□□□ -0.31
CCDC42-202ENST00000539522 SLCO1B1Q9Y6L6 691 aa13.13□□□□□ -0.31
CCDC42-202ENST00000539522 R4GN57 208 aa13.13□□□□□ -0.31
CCDC42-202ENST00000539522 C5orf60A6NFR6 353 aa13.12□□□□□ -0.31
CCDC42-202ENST00000539522 KCNN4O15554 427 aa13.12□□□□□ -0.31
CCDC42-202ENST00000539522 METTL18O95568 372 aa13.12□□□□□ -0.31
CCDC42-202ENST00000539522 MT-CYBP00156 380 aaPredicted RBP13.12□□□□□ -0.31
CCDC42-202ENST00000539522 PRKCGP05129 697 aa13.12□□□□□ -0.31
CCDC42-202ENST00000539522 ZSCAN5DPP0CG00 497 aa13.12□□□□□ -0.31
CCDC42-202ENST00000539522 TIMP2P16035 220 aa13.12□□□□□ -0.31
CCDC42-202ENST00000539522 C5AR1P21730 350 aa13.12□□□□□ -0.31
CCDC42-202ENST00000539522 ITGB7P26010 798 aa13.12□□□□□ -0.31
CCDC42-202ENST00000539522 HSPA9P38646 679 aaKnown RBP13.12□□□□□ -0.31
CCDC42-202ENST00000539522 AP1S1P61966 158 aa13.12□□□□□ -0.31
CCDC42-202ENST00000539522 ZBTB16Q05516 673 aa13.12□□□□□ -0.31
CCDC42-202ENST00000539522 C2orf54Q08AI8 447 aa13.12□□□□□ -0.31
CCDC42-202ENST00000539522 OLIG2Q13516 323 aa13.12□□□□□ -0.31
CCDC42-202ENST00000539522 BYSLQ13895 437 aaKnown RBP13.12□□□□□ -0.31
CCDC42-202ENST00000539522 ZNF805Q5CZA5 627 aa13.12□□□□□ -0.31
CCDC42-202ENST00000539522 ANKRD20A2Q5SQ80 823 aa13.12□□□□□ -0.31
CCDC42-202ENST00000539522 ANKRD20A1Q5TYW2 823 aa13.12□□□□□ -0.31
CCDC42-202ENST00000539522 ANKRD20A3Q5VUR7 823 aa13.12□□□□□ -0.31
CCDC42-202ENST00000539522 DARS2Q6PI48 645 aaKnown RBP13.12□□□□□ -0.31
CCDC42-202ENST00000539522 KDELC1Q6UW63 502 aa13.12□□□□□ -0.31
CCDC42-202ENST00000539522 FAM124AQ86V42 546 aa13.12□□□□□ -0.31
CCDC42-202ENST00000539522 CDKL3Q8IVW4 592 aaPredicted RBP13.12□□□□□ -0.31
CCDC42-202ENST00000539522 PGBD3Q8N328 593 aa13.12□□□□□ -0.31
CCDC42-202ENST00000539522 RYBPQ8N488 228 aaPredicted RBP13.12□□□□□ -0.31
CCDC42-202ENST00000539522 HDDC3Q8N4P3 179 aa13.12□□□□□ -0.31
CCDC42-202ENST00000539522 NOA1Q8NC60 698 aaKnown RBP13.12□□□□□ -0.31
CCDC42-202ENST00000539522 SPOCK2Q92563 424 aa13.12□□□□□ -0.31
CCDC42-202ENST00000539522 RUNDC3BQ96NL0 473 aa13.12□□□□□ -0.31
CCDC42-202ENST00000539522 TRIB3Q96RU7 358 aa13.12□□□□□ -0.31
CCDC42-202ENST00000539522 RBM15Q96T37 977 aaKnown RBP eCLIP13.12□□□□□ -0.31
CCDC42-202ENST00000539522 ORAI3Q9BRQ5 295 aa13.12□□□□□ -0.31
CCDC42-202ENST00000539522 POLR1EQ9GZS1 481 aaKnown RBP13.12□□□□□ -0.31
CCDC42-202ENST00000539522 SUV39H2Q9H5I1 410 aa13.12□□□□□ -0.31
CCDC42-202ENST00000539522 EBF2Q9HAK2 575 aa13.12□□□□□ -0.31
CCDC42-202ENST00000539522 ZSCAN32Q9NX65 697 aa13.12□□□□□ -0.31
CCDC42-202ENST00000539522 FBXL12Q9NXK8 326 aa13.12□□□□□ -0.31
CCDC42-202ENST00000539522 WSB2Q9NYS7 404 aaPredicted RBP13.12□□□□□ -0.31
CCDC42-202ENST00000539522 BCCIPQ9P287 314 aaKnown RBP eCLIP13.12□□□□□ -0.31
CCDC42-202ENST00000539522 FEZ2Q9UHY8 353 aaPredicted RBP13.12□□□□□ -0.31
CCDC42-202ENST00000539522 ITM2BQ9Y287 266 aa13.12□□□□□ -0.31
CCDC42-202ENST00000539522 THADAQ6YHU6 1953 aa13.12□□□□□ -0.31
CCDC42-202ENST00000539522 SCN8AQ9UQD0 1980 aa13.12□□□□□ -0.31
CCDC42-202ENST00000539522 A0A0U1RQS6 177 aa13.11□□□□□ -0.31
CCDC42-202ENST00000539522 C16orf96A6NNT2 1141 aa13.11□□□□□ -0.31
CCDC42-202ENST00000539522 KPNA3O00505 521 aaPredicted RBP13.11□□□□□ -0.31
CCDC42-202ENST00000539522 AREL1O15033 823 aa13.11□□□□□ -0.31
CCDC42-202ENST00000539522 GCATO75600 419 aa13.11□□□□□ -0.31
CCDC42-202ENST00000539522 ALDH1A2O94788 518 aa13.11□□□□□ -0.31
CCDC42-202ENST00000539522 ADH1BP00325 375 aa13.11□□□□□ -0.31
CCDC42-202ENST00000539522 DNTTP04053 509 aa13.11□□□□□ -0.31
CCDC42-202ENST00000539522 PRNPP04156 253 aa13.11□□□□□ -0.31
CCDC42-202ENST00000539522 ITGAVP06756 1048 aa13.11□□□□□ -0.31
CCDC42-202ENST00000539522 CD86P42081 329 aa13.11□□□□□ -0.31
CCDC42-202ENST00000539522 ADPRHP54922 357 aa13.11□□□□□ -0.31
CCDC42-202ENST00000539522 SEMG2Q02383 582 aa13.11□□□□□ -0.31
CCDC42-202ENST00000539522 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.11□□□□□ -0.31
CCDC42-202ENST00000539522 USP30Q70CQ3 517 aa13.11□□□□□ -0.31
CCDC42-202ENST00000539522 MAATS1Q7Z4T9 603 aa13.11□□□□□ -0.31
CCDC42-202ENST00000539522 SLC41A1Q8IVJ1 513 aa13.11□□□□□ -0.31
CCDC42-202ENST00000539522 PIH1D2Q8WWB5 315 aa13.11□□□□□ -0.31
CCDC42-202ENST00000539522 GAB3Q8WWW8 586 aa13.11□□□□□ -0.31
CCDC42-202ENST00000539522 MAGOHBQ96A72 148 aaKnown RBP13.11□□□□□ -0.31
CCDC42-202ENST00000539522 TOE1Q96GM8 510 aaKnown RBP13.11□□□□□ -0.31
CCDC42-202ENST00000539522 LRIG1Q96JA1 1093 aa13.11□□□□□ -0.31
CCDC42-202ENST00000539522 SPATA13Q96N96 652 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms