RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 MRPL57Q9BQC6 102 aaKnown RBP13.28□□□□□ -0.28
LDLR-203ENST00000535915 KLHL4Q9C0H6 718 aa13.28□□□□□ -0.28
LDLR-203ENST00000535915 POMKQ9H5K3 350 aa13.28□□□□□ -0.28
LDLR-203ENST00000535915 NCKIPSDQ9NZQ3 722 aa13.28□□□□□ -0.28
LDLR-203ENST00000535915 TMEM233B4DJY2 109 aa13.28□□□□□ -0.28
LDLR-203ENST00000535915 CYBAP13498 195 aa13.28□□□□□ -0.28
LDLR-203ENST00000535915 KPNA2P52292 529 aaKnown RBP13.28□□□□□ -0.28
LDLR-203ENST00000535915 POU4F1Q01851 419 aa13.28□□□□□ -0.28
LDLR-203ENST00000535915 CACNB2Q08289 660 aaPredicted RBP13.28□□□□□ -0.28
LDLR-203ENST00000535915 CSHL1Q14406 222 aa13.28□□□□□ -0.28
LDLR-203ENST00000535915 DSC3Q14574 896 aa13.28□□□□□ -0.28
LDLR-203ENST00000535915 ARMC3Q5W041 872 aa13.28□□□□□ -0.28
LDLR-203ENST00000535915 AFMIDQ63HM1 303 aa13.28□□□□□ -0.28
LDLR-203ENST00000535915 CWF19L1Q69YN2 538 aaKnown RBP13.28□□□□□ -0.28
LDLR-203ENST00000535915 SETD3Q86TU7 594 aaPredicted RBP13.28□□□□□ -0.28
LDLR-203ENST00000535915 PDSS2Q86YH6 399 aa13.28□□□□□ -0.28
LDLR-203ENST00000535915 RNF135Q8IUD6 432 aa13.28□□□□□ -0.28
LDLR-203ENST00000535915 MFN1Q8IWA4 741 aa13.28□□□□□ -0.28
LDLR-203ENST00000535915 CPSF7Q8N684 471 aaKnown RBP13.28□□□□□ -0.28
LDLR-203ENST00000535915 GDPD5Q8WTR4 605 aa13.28□□□□□ -0.28
LDLR-203ENST00000535915 PPP2R3CQ969Q6 453 aa13.28□□□□□ -0.28
LDLR-203ENST00000535915 SERPINI1Q99574 410 aa13.28□□□□□ -0.28
LDLR-203ENST00000535915 DDX50Q9BQ39 737 aaKnown RBP13.28□□□□□ -0.28
LDLR-203ENST00000535915 EBF3Q9H4W6 596 aa13.28□□□□□ -0.28
LDLR-203ENST00000535915 OSER1Q9NX31 292 aa13.28□□□□□ -0.28
LDLR-203ENST00000535915 GTSE1Q9NYZ3 720 aa13.28□□□□□ -0.28
LDLR-203ENST00000535915 RPLP2P05387 115 aaKnown RBP13.27□□□□□ -0.28
LDLR-203ENST00000535915 TYMPP19971 482 aa13.27□□□□□ -0.28
LDLR-203ENST00000535915 PAX3P23760 479 aa13.27□□□□□ -0.28
LDLR-203ENST00000535915 PEX2P28328 305 aa13.27□□□□□ -0.28
LDLR-203ENST00000535915 CTGFP29279 349 aa13.27□□□□□ -0.28
LDLR-203ENST00000535915 MLLT6P55198 1093 aaPredicted RBP13.27□□□□□ -0.28
LDLR-203ENST00000535915 MAXP61244 160 aa13.27□□□□□ -0.28
LDLR-203ENST00000535915 TRIP10Q15642 601 aa13.27□□□□□ -0.28
LDLR-203ENST00000535915 SLC5A9Q2M3M2 681 aa13.27□□□□□ -0.28
LDLR-203ENST00000535915 SH2D4BQ5SQS7 431 aa13.27□□□□□ -0.28
LDLR-203ENST00000535915 RBM20Q5T481 1227 aaKnown RBP13.27□□□□□ -0.28
LDLR-203ENST00000535915 PIK3R6Q5UE93 754 aa13.27□□□□□ -0.28
LDLR-203ENST00000535915 RNF220Q5VTB9 566 aa13.27□□□□□ -0.28
LDLR-203ENST00000535915 SDHAF4Q5VUM1 108 aa13.27□□□□□ -0.28
LDLR-203ENST00000535915 ZNF280DQ6N043 979 aa13.27□□□□□ -0.28
LDLR-203ENST00000535915 SDCCAG8Q86SQ7 713 aaPredicted RBP13.27□□□□□ -0.28
LDLR-203ENST00000535915 KBTBD6Q86V97 674 aa13.27□□□□□ -0.28
LDLR-203ENST00000535915 ZNF354CQ86Y25 554 aa13.27□□□□□ -0.28
LDLR-203ENST00000535915 LRRC49Q8IUZ0 686 aa13.27□□□□□ -0.28
LDLR-203ENST00000535915 TXNDC5Q8NBS9 432 aaKnown RBP13.27□□□□□ -0.28
LDLR-203ENST00000535915 RCN3Q96D15 328 aa13.27□□□□□ -0.28
LDLR-203ENST00000535915 CCDC28BQ9BUN5 200 aa13.27□□□□□ -0.28
LDLR-203ENST00000535915 SLC25A51Q9H1U9 297 aa13.27□□□□□ -0.28
LDLR-203ENST00000535915 RRAGCQ9HB90 399 aa13.27□□□□□ -0.28
LDLR-203ENST00000535915 NT5MQ9NPB1 228 aa13.27□□□□□ -0.28
LDLR-203ENST00000535915 STK39Q9UEW8 545 aa13.27□□□□□ -0.28
LDLR-203ENST00000535915 PRPF19Q9UMS4 504 aaKnown RBP13.27□□□□□ -0.28
LDLR-203ENST00000535915 HEATR9A2RTY3 570 aa13.27□□□□□ -0.29
LDLR-203ENST00000535915 NEMP2A6NFY4 417 aa13.27□□□□□ -0.29
LDLR-203ENST00000535915 SLC22A2O15244 555 aa13.27□□□□□ -0.29
LDLR-203ENST00000535915 NPHS1O60500 1241 aa13.27□□□□□ -0.29
LDLR-203ENST00000535915 ASGR1P07306 291 aa13.27□□□□□ -0.29
LDLR-203ENST00000535915 LYNP07948 512 aa13.27□□□□□ -0.29
LDLR-203ENST00000535915 ZCCHC18P0CG32 403 aa13.27□□□□□ -0.29
LDLR-203ENST00000535915 ROR2Q01974 943 aaKnown RBP13.27□□□□□ -0.29
LDLR-203ENST00000535915 NSUN2Q08J23 767 aaKnown RBP eCLIP13.27□□□□□ -0.29
LDLR-203ENST00000535915 FAM83EQ2M2I3 478 aa13.27□□□□□ -0.29
LDLR-203ENST00000535915 SFT2D3Q587I9 215 aa13.27□□□□□ -0.29
LDLR-203ENST00000535915 ZNF789Q5FWF6 425 aa13.27□□□□□ -0.29
LDLR-203ENST00000535915 BNC2Q6ZN30 1099 aaPredicted RBP13.27□□□□□ -0.29
LDLR-203ENST00000535915 TRIM67Q6ZTA4 783 aa13.27□□□□□ -0.29
LDLR-203ENST00000535915 IFNL1Q8IU54 200 aa13.27□□□□□ -0.29
LDLR-203ENST00000535915 KDM1BQ8NB78 822 aa13.27□□□□□ -0.29
LDLR-203ENST00000535915 CDRT15Q96T59 188 aa13.27□□□□□ -0.29
LDLR-203ENST00000535915 NOL6Q9H6R4 1146 aaKnown RBP13.27□□□□□ -0.29
LDLR-203ENST00000535915 CLIC5Q9NZA1 410 aa13.27□□□□□ -0.29
LDLR-203ENST00000535915 FIS1Q9Y3D6 152 aa13.27□□□□□ -0.29
LDLR-203ENST00000535915 CFLARO15519 480 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 ENO3P13929 434 aaPredicted RBP13.26□□□□□ -0.29
LDLR-203ENST00000535915 HNRNPLP14866 589 aaKnown RBP eCLIP13.26□□□□□ -0.29
LDLR-203ENST00000535915 ATP5F1P24539 256 aaPredicted RBP13.26□□□□□ -0.29
LDLR-203ENST00000535915 CD86P42081 329 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 SERPINH1P50454 418 aaKnown RBP13.26□□□□□ -0.29
LDLR-203ENST00000535915 RENBPP51606 427 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 LAMB3Q13751 1172 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 DDR2Q16832 855 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 KDELC1Q6UW63 502 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 PIWIL4Q7Z3Z4 852 aaKnown RBP13.26□□□□□ -0.29
LDLR-203ENST00000535915 DRAXINQ8NBI3 349 aaPredicted RBP13.26□□□□□ -0.29
LDLR-203ENST00000535915 CALML6Q8TD86 181 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 TRIB2Q92519 343 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 PABPC5Q96DU9 382 aaKnown RBP13.26□□□□□ -0.29
LDLR-203ENST00000535915 ZNF385DQ9H6B1 395 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 PCDHB8Q9UN66 801 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 TLR6Q9Y2C9 796 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 PLXNA3P51805 1871 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 TRPC5OSA6NMA1 111 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 H3BNX3 289 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 J3KR12 359 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 ADSLP30566 484 aaPredicted RBP13.26□□□□□ -0.29
LDLR-203ENST00000535915 HNRNPDQ14103 355 aaKnown RBP13.26□□□□□ -0.29
LDLR-203ENST00000535915 MFSD14CQ5VZR4 134 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 KIAA0408Q6ZU52 694 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 SPNS2Q8IVW8 549 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms