RNA–Protein interactions for RNA: ENST00000534442.5

ECHDC1-223, Transcript of ethylmalonyl-CoA decarboxylase 1, human

TSL 5

Gene ECHDC1, Length 577 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ECHDC1-223	ENST00000534442	FAM90A18P	A6NE21	464 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	FAM90A16P	A6NEW6	464 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	HMX3	A6NHT5	357 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	FAM90A9P	A6NNJ1	464 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	ZAR1L	A6NP61	321 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	FAM90A5P	A8MXJ8	464 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	RNASET2	O00584	256 aa	Known RBP	4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	TRIAP1	O43715	76 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	CBFA2T3	O75081	653 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	RECQL4	O94761	1208 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	CLDN1	O95832	211 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	FAM90A15P	P0C7V4	464 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	FAM90A14P	P0C7W9	464 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	JUP	P14923	745 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	HTR7	P34969	479 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	PDE6C	P51160	858 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	VAV2	P52735	878 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	AP2B1	P63010	937 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	CNTN2	Q02246	1040 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	REST	Q13127	1097 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	CUL4B	Q13620	913 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	WTAP	Q15007	396 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	MAPK6	Q16659	721 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	LY6K	Q17RY6	165 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	ZXDC	Q2QGD7	858 aa	Predicted RBP	4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	BEAN1	Q3B7T3	259 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	ATG9A	Q7Z3C6	839 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	PRIMA1	Q86XR5	153 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	CPO	Q8IVL8	374 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	ARID3B	Q8IVW6	561 aa	Predicted RBP	4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	CCDC117	Q8IWD4	279 aa	Predicted RBP	4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	COLGALT1	Q8NBJ5	622 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	MBD3L2	Q8NHZ7	208 aa	Predicted RBP	4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	SNRNP27	Q8WVK2	155 aa	Known RBP	4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	ASB12	Q8WXK4	309 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	ATG4A	Q8WYN0	398 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	GLG1	Q92896	1179 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	USP13	Q92995	863 aa	Predicted RBP	4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	GRAMD1A	Q96CP6	724 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	MPP4	Q96JB8	637 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	WDR24	Q96S15	920 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	ADO	Q96SZ5	270 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	ADAM2	Q99965	735 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	GTPBP2	Q9BX10	602 aa	Known RBP	4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	NUSAP1	Q9BXS6	441 aa	Known RBP	4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	ALOXE3	Q9BYJ1	711 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	UNKL	Q9H9P5	680 aa	Known RBP	4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	SAYSD1	Q9NPB0	183 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	PI4KB	Q9UBF8	816 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	HDAC6	Q9UBN7	1215 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	DKK2	Q9UBU2	259 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	DAPP1	Q9UN19	280 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	CRYL1	Q9Y2S2	319 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	EML5	Q05BV3	1969 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	PARP14	Q460N5	1801 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	TTC3	P53804	2025 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	F5	P12259	2224 aa		4.92	□□□□□ -1.62
ECHDC1-223	ENST00000534442	GAGE12B	A1L429	117 aa		4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	GAGE12H	A6NDE8	117 aa		4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	TMEM200C	A6NKL6	621 aa		4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442		H0Y3Z8	333 aa		4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	PPM1D	O15297	605 aa		4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	ZSCAN9	O15535	394 aa	Predicted RBP	4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	FAM20B	O75063	409 aa		4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	DDX58	O95786	925 aa	Known RBP	4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	POLB	P06746	335 aa		4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	PDHA1	P08559	390 aa		4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	CHRNB1	P11230	501 aa		4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	NR4A1	P22736	598 aa		4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	ACRV1	P26436	265 aa		4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	CNTF	P26441	200 aa		4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	PRKAR1B	P31321	381 aa		4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	TXK	P42681	527 aa		4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	ATXN3	P54252	364 aa	Predicted RBP	4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	TAF12	Q16514	161 aa		4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	BTBD16	Q32M84	506 aa		4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	KIAA1755	Q5JYT7	1200 aa		4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	DEPDC1	Q5TB30	811 aa		4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	RINT1	Q6NUQ1	792 aa		4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	CLEC9A	Q6UXN8	241 aa		4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442		Q6ZS52	159 aa		4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	LRRTM4	Q86VH4	590 aa		4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	TMPRSS6	Q8IU80	811 aa		4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	TMTC1	Q8IUR5	882 aa		4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	NAXD	Q8IW45	347 aa		4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	NRSN1	Q8IZ57	195 aa		4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	METTL25	Q8N6Q8	603 aa		4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	SUN3	Q8TAQ9	357 aa		4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	ABHD5	Q8WTS1	349 aa		4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	SLC22A17	Q8WUG5	538 aa		4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	THAP4	Q8WY91	577 aa		4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	FUBP1	Q96AE4	644 aa	Known RBP	4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	FAM136A	Q96C01	138 aa		4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	HAPLN3	Q96S86	360 aa		4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	GALNT9	Q9HCQ5	603 aa		4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	RIC8A	Q9NPQ8	531 aa		4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	DONSON	Q9NYP3	566 aa		4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	TSPYL4	Q9UJ04	414 aa		4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	RIMKLB	Q9ULI2	386 aa		4.91	□□□□□ -1.62
ECHDC1-223	ENST00000534442	SLC27A6	Q9Y2P4	619 aa		4.91	□□□□□ -1.62

Retrieved 100 of 20,778 RNA–protein pairs in 113.6 ms