RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 APOBEC3BQ9UH17 382 aaKnown RBP14.92□□□□□ -0.02
VPS28-215ENST00000531924 FZD10Q9ULW2 581 aa14.92□□□□□ -0.02
VPS28-215ENST00000531924 DOLKQ9UPQ8 538 aa14.92□□□□□ -0.02
VPS28-215ENST00000531924 NEU3Q9UQ49 428 aa14.92□□□□□ -0.02
VPS28-215ENST00000531924 KNTC1P50748 2209 aa14.92□□□□□ -0.02
VPS28-215ENST00000531924 TMCO5BA8MYB1 307 aa14.91□□□□□ -0.02
VPS28-215ENST00000531924 AREL1O15033 823 aa14.91□□□□□ -0.02
VPS28-215ENST00000531924 DAPK3O43293 454 aa14.91□□□□□ -0.02
VPS28-215ENST00000531924 USP12O75317 370 aa14.91□□□□□ -0.02
VPS28-215ENST00000531924 CSO75390 466 aaKnown RBP14.91□□□□□ -0.02
VPS28-215ENST00000531924 ANXA6P08133 673 aa14.91□□□□□ -0.02
VPS28-215ENST00000531924 GIMD1P0DJR0 217 aa14.91□□□□□ -0.02
VPS28-215ENST00000531924 HTR7P34969 479 aa14.91□□□□□ -0.02
VPS28-215ENST00000531924 SUOXP51687 545 aa14.91□□□□□ -0.02
VPS28-215ENST00000531924 PFN3P60673 137 aa14.91□□□□□ -0.02
VPS28-215ENST00000531924 RPL7AP62424 266 aaKnown RBP14.91□□□□□ -0.02
VPS28-215ENST00000531924 YPEL5P62699 121 aa14.91□□□□□ -0.02
VPS28-215ENST00000531924 ELP6Q0PNE2 266 aa14.91□□□□□ -0.02
VPS28-215ENST00000531924 CCDC173Q0VFZ6 552 aa14.91□□□□□ -0.02
VPS28-215ENST00000531924 SERINC3Q13530 473 aa14.91□□□□□ -0.02
VPS28-215ENST00000531924 GRM3Q14832 879 aa14.91□□□□□ -0.02
VPS28-215ENST00000531924 TBC1D25Q3MII6 688 aa14.91□□□□□ -0.02
VPS28-215ENST00000531924 PRRT3Q5FWE3 981 aa14.91□□□□□ -0.02
VPS28-215ENST00000531924 ERAP2Q6P179 960 aa14.91□□□□□ -0.02
VPS28-215ENST00000531924 EFL1Q7Z2Z2 1120 aaKnown RBP14.91□□□□□ -0.02
VPS28-215ENST00000531924 LSMEM2Q8N112 164 aa14.91□□□□□ -0.02
VPS28-215ENST00000531924 NETO2Q8NC67 525 aa14.91□□□□□ -0.02
VPS28-215ENST00000531924 SNIP1Q8TAD8 396 aaKnown RBP14.91□□□□□ -0.02
VPS28-215ENST00000531924 CRELD1Q96HD1 420 aa14.91□□□□□ -0.02
VPS28-215ENST00000531924 EXOC2Q96KP1 924 aa14.91□□□□□ -0.02
VPS28-215ENST00000531924 LGMNQ99538 433 aa14.91□□□□□ -0.02
VPS28-215ENST00000531924 PARVAQ9NVD7 372 aa14.91□□□□□ -0.02
VPS28-215ENST00000531924 DKK3Q9UBP4 350 aa14.91□□□□□ -0.02
VPS28-215ENST00000531924 SALL4Q9UJQ4 1053 aa14.91□□□□□ -0.02
VPS28-215ENST00000531924 MFHAS1Q9Y4C4 1052 aa14.91□□□□□ -0.02
VPS28-215ENST00000531924 PCDHB1Q9Y5F3 818 aa14.91□□□□□ -0.02
VPS28-215ENST00000531924 LAMA5O15230 3695 aa14.91□□□□□ -0.02
VPS28-215ENST00000531924 LRRC10BA6NIK2 292 aa14.9□□□□□ -0.02
VPS28-215ENST00000531924 TOR1BO14657 336 aa14.9□□□□□ -0.02
VPS28-215ENST00000531924 TPP1O14773 563 aa14.9□□□□□ -0.02
VPS28-215ENST00000531924 SPINT1O43278 529 aa14.9□□□□□ -0.02
VPS28-215ENST00000531924 MBD3O95983 291 aa14.9□□□□□ -0.02
VPS28-215ENST00000531924 MPOP05164 745 aa14.9□□□□□ -0.02
VPS28-215ENST00000531924 TIMP2P16035 220 aa14.9□□□□□ -0.02
VPS28-215ENST00000531924 PSMA2P25787 234 aa14.9□□□□□ -0.02
VPS28-215ENST00000531924 BLKP51451 505 aa14.9□□□□□ -0.02
VPS28-215ENST00000531924 ADKP55263 362 aaKnown RBP14.9□□□□□ -0.02
VPS28-215ENST00000531924 GABREP78334 506 aa14.9□□□□□ -0.02
VPS28-215ENST00000531924 PPARDQ03181 441 aa14.9□□□□□ -0.02
VPS28-215ENST00000531924 KLHL40Q2TBA0 621 aa14.9□□□□□ -0.02
VPS28-215ENST00000531924 CCDC183Q5T5S1 534 aa14.9□□□□□ -0.02
VPS28-215ENST00000531924 DNAAF5Q86Y56 855 aa14.9□□□□□ -0.02
VPS28-215ENST00000531924 PHACTR4Q8IZ21 702 aa14.9□□□□□ -0.02
VPS28-215ENST00000531924 MCOLN2Q8IZK6 566 aa14.9□□□□□ -0.02
VPS28-215ENST00000531924 UMODL1-AS1Q8N2C9 162 aa14.9□□□□□ -0.02
VPS28-215ENST00000531924 AOPEPQ8N6M6 819 aa14.9□□□□□ -0.02
VPS28-215ENST00000531924 TPCN2Q8NHX9 752 aa14.9□□□□□ -0.02
VPS28-215ENST00000531924 SCG3Q8WXD2 468 aaKnown RBP14.9□□□□□ -0.02
VPS28-215ENST00000531924 CENPTQ96BT3 561 aa14.9□□□□□ -0.02
VPS28-215ENST00000531924 ZNF578Q96N58 590 aaPredicted RBP14.9□□□□□ -0.02
VPS28-215ENST00000531924 UBL7Q96S82 380 aaPredicted RBP14.9□□□□□ -0.02
VPS28-215ENST00000531924 CPEB1Q9BZB8 566 aaKnown RBP14.9□□□□□ -0.02
VPS28-215ENST00000531924 KLC2Q9H0B6 622 aa14.9□□□□□ -0.02
VPS28-215ENST00000531924 DHX35Q9H5Z1 703 aaKnown RBP14.9□□□□□ -0.02
VPS28-215ENST00000531924 NOL6Q9H6R4 1146 aaKnown RBP14.9□□□□□ -0.02
VPS28-215ENST00000531924 KLF15Q9UIH9 416 aa14.9□□□□□ -0.02
VPS28-215ENST00000531924 ARHGAP42A6NI28 874 aa14.89□□□□□ -0.03
VPS28-215ENST00000531924 WASH4PA8MWX3 477 aa14.89□□□□□ -0.03
VPS28-215ENST00000531924 EEF2KO00418 725 aaKnown RBP14.89□□□□□ -0.03
VPS28-215ENST00000531924 MUSKO15146 869 aa14.89□□□□□ -0.03
VPS28-215ENST00000531924 LZTS3O60299 673 aaPredicted RBP14.89□□□□□ -0.03
VPS28-215ENST00000531924 RNF8O76064 485 aa14.89□□□□□ -0.03
VPS28-215ENST00000531924 PIGNO95427 931 aa14.89□□□□□ -0.03
VPS28-215ENST00000531924 CTSEP14091 401 aa14.89□□□□□ -0.03
VPS28-215ENST00000531924 ITIH2P19823 946 aa14.89□□□□□ -0.03
VPS28-215ENST00000531924 HTR1BP28222 390 aa14.89□□□□□ -0.03
VPS28-215ENST00000531924 IGFALSP35858 605 aa14.89□□□□□ -0.03
VPS28-215ENST00000531924 EIF4A3P38919 411 aaKnown RBP14.89□□□□□ -0.03
VPS28-215ENST00000531924 NDST2P52849 883 aa14.89□□□□□ -0.03
VPS28-215ENST00000531924 PCBP4P57723 403 aaKnown RBP14.89□□□□□ -0.03
VPS28-215ENST00000531924 EIF2B5Q13144 721 aaKnown RBP14.89□□□□□ -0.03
VPS28-215ENST00000531924 C1orf61Q13536 156 aa14.89□□□□□ -0.03
VPS28-215ENST00000531924 LRRC14Q15048 493 aa14.89□□□□□ -0.03
VPS28-215ENST00000531924 CYTH1Q15438 398 aa14.89□□□□□ -0.03
VPS28-215ENST00000531924 FILIP1LQ4L180 1135 aa14.89□□□□□ -0.03
VPS28-215ENST00000531924 BROXQ5VW32 411 aa14.89□□□□□ -0.03
VPS28-215ENST00000531924 CDCP2Q5VXM1 449 aa14.89□□□□□ -0.03
VPS28-215ENST00000531924 ESRP1Q6NXG1 681 aaKnown RBP14.89□□□□□ -0.03
VPS28-215ENST00000531924 GUSBP11Q6P575 273 aa14.89□□□□□ -0.03
VPS28-215ENST00000531924 MACC1Q6ZN28 852 aa14.89□□□□□ -0.03
VPS28-215ENST00000531924 RBFAQ8N0V3 343 aa14.89□□□□□ -0.03
VPS28-215ENST00000531924 ZNF248Q8NDW4 579 aa14.89□□□□□ -0.03
VPS28-215ENST00000531924 ATL2Q8NHH9 583 aa14.89□□□□□ -0.03
VPS28-215ENST00000531924 HCAR2Q8TDS4 363 aa14.89□□□□□ -0.03
VPS28-215ENST00000531924 VCPIP1Q96JH7 1222 aa14.89□□□□□ -0.03
VPS28-215ENST00000531924 FCRL3Q96P31 734 aaPredicted RBP14.89□□□□□ -0.03
VPS28-215ENST00000531924 SUV39H2Q9H5I1 410 aa14.89□□□□□ -0.03
VPS28-215ENST00000531924 SYNDIG1Q9H7V2 258 aa14.89□□□□□ -0.03
VPS28-215ENST00000531924 AP4E1Q9UPM8 1137 aa14.89□□□□□ -0.03
VPS28-215ENST00000531924 DOCK4Q8N1I0 1966 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms