RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 LY6DQ14210 128 aa23.89■■□□□ 1.41
CPSF1-202ENST00000527827 ARL13BQ3SXY8 428 aa23.89■■□□□ 1.41
CPSF1-202ENST00000527827 GDPD4Q6W3E5 623 aa23.89■■□□□ 1.41
CPSF1-202ENST00000527827 STK33Q9BYT3 514 aa23.89■■□□□ 1.41
CPSF1-202ENST00000527827 MBNL1Q9NR56 388 aaKnown RBP23.89■■□□□ 1.41
CPSF1-202ENST00000527827 J3QKU1 62 aa23.88■■□□□ 1.41
CPSF1-202ENST00000527827 YY2O15391 372 aa23.88■■□□□ 1.41
CPSF1-202ENST00000527827 ITIH2P19823 946 aa23.88■■□□□ 1.41
CPSF1-202ENST00000527827 RPIAP49247 311 aa23.88■■□□□ 1.41
CPSF1-202ENST00000527827 MACC1Q6ZN28 852 aa23.88■■□□□ 1.41
CPSF1-202ENST00000527827 PHLDB2Q86SQ0 1253 aa23.88■■□□□ 1.41
CPSF1-202ENST00000527827 TTC7BQ86TV6 843 aa23.88■■□□□ 1.41
CPSF1-202ENST00000527827 TP53I13Q8NBR0 393 aaPredicted RBP23.88■■□□□ 1.41
CPSF1-202ENST00000527827 JOSD2Q8TAC2 188 aa23.88■■□□□ 1.41
CPSF1-202ENST00000527827 GPT2Q8TD30 523 aa23.88■■□□□ 1.41
CPSF1-202ENST00000527827 SLC20A1Q8WUM9 679 aa23.88■■□□□ 1.41
CPSF1-202ENST00000527827 GLMNQ92990 594 aa23.88■■□□□ 1.41
CPSF1-202ENST00000527827 NAT6Q93015 286 aa23.88■■□□□ 1.41
CPSF1-202ENST00000527827 TBC1D31Q96DN5 1066 aa23.88■■□□□ 1.41
CPSF1-202ENST00000527827 NOCTQ9UK39 431 aaKnown RBP23.88■■□□□ 1.41
CPSF1-202ENST00000527827 HPCAL4Q9UM19 191 aa23.88■■□□□ 1.41
CPSF1-202ENST00000527827 K7ENP7 123 aa23.87■■□□□ 1.41
CPSF1-202ENST00000527827 KDELR3O43731 214 aa23.87■■□□□ 1.41
CPSF1-202ENST00000527827 RAMP2O60895 175 aa23.87■■□□□ 1.41
CPSF1-202ENST00000527827 CYP1A1P04798 512 aaPredicted RBP23.87■■□□□ 1.41
CPSF1-202ENST00000527827 ANXA6P08133 673 aa23.87■■□□□ 1.41
CPSF1-202ENST00000527827 CELA2BP08218 269 aaPredicted RBP23.87■■□□□ 1.41
CPSF1-202ENST00000527827 TSHRP16473 764 aa23.87■■□□□ 1.41
CPSF1-202ENST00000527827 MMP8P22894 467 aa23.87■■□□□ 1.41
CPSF1-202ENST00000527827 SDC4P31431 198 aa23.87■■□□□ 1.41
CPSF1-202ENST00000527827 EIF4A3P38919 411 aaKnown RBP23.87■■□□□ 1.41
CPSF1-202ENST00000527827 UBE2HP62256 183 aa23.87■■□□□ 1.41
CPSF1-202ENST00000527827 FAXCQ5TGI0 409 aa23.87■■□□□ 1.41
CPSF1-202ENST00000527827 INO80CQ6PI98 192 aaPredicted RBP23.87■■□□□ 1.41
CPSF1-202ENST00000527827 FOXR1Q6PIV2 292 aa23.87■■□□□ 1.41
CPSF1-202ENST00000527827 CLEC14AQ86T13 490 aa23.87■■□□□ 1.41
CPSF1-202ENST00000527827 CCDC185Q8N715 623 aa23.87■■□□□ 1.41
CPSF1-202ENST00000527827 WDR36Q8NI36 951 aaKnown RBP23.87■■□□□ 1.41
CPSF1-202ENST00000527827 CCDC97Q96F63 343 aaPredicted RBP23.87■■□□□ 1.41
CPSF1-202ENST00000527827 EPAS1Q99814 870 aa23.87■■□□□ 1.41
CPSF1-202ENST00000527827 CCDC3Q9BQI4 270 aa23.87■■□□□ 1.41
CPSF1-202ENST00000527827 SLC13A1Q9BZW2 595 aa23.87■■□□□ 1.41
CPSF1-202ENST00000527827 PADI4Q9UM07 663 aa23.87■■□□□ 1.41
CPSF1-202ENST00000527827 LRP4O75096 1905 aa23.86■■□□□ 1.41
CPSF1-202ENST00000527827 C2CD4BA6NLJ0 364 aa23.86■■□□□ 1.41
CPSF1-202ENST00000527827 TOR1BO14657 336 aa23.86■■□□□ 1.41
CPSF1-202ENST00000527827 TM7SF2O76062 418 aa23.86■■□□□ 1.41
CPSF1-202ENST00000527827 TMCC1O94876 653 aa23.86■■□□□ 1.41
CPSF1-202ENST00000527827 GJB6O95452 261 aa23.86■■□□□ 1.41
CPSF1-202ENST00000527827 PLEKP08567 350 aaPredicted RBP23.86■■□□□ 1.41
CPSF1-202ENST00000527827 PTPN9P43378 593 aa23.86■■□□□ 1.41
CPSF1-202ENST00000527827 KLHL40Q2TBA0 621 aa23.86■■□□□ 1.41
CPSF1-202ENST00000527827 DPCR1Q3MIW9 517 aa23.86■■□□□ 1.41
CPSF1-202ENST00000527827 STRADAQ7RTN6 431 aa23.86■■□□□ 1.41
CPSF1-202ENST00000527827 NETO2Q8NC67 525 aa23.86■■□□□ 1.41
CPSF1-202ENST00000527827 WDR48Q8TAF3 677 aa23.86■■□□□ 1.41
CPSF1-202ENST00000527827 CXorf40AQ8TE69 158 aa23.86■■□□□ 1.41
CPSF1-202ENST00000527827 CENPIQ92674 756 aaPredicted RBP23.86■■□□□ 1.41
CPSF1-202ENST00000527827 GDAP1L1Q96MZ0 367 aa23.86■■□□□ 1.41
CPSF1-202ENST00000527827 TTYH3Q9C0H2 523 aa23.86■■□□□ 1.41
CPSF1-202ENST00000527827 NOL6Q9H6R4 1146 aaKnown RBP23.86■■□□□ 1.41
CPSF1-202ENST00000527827 PIEZO2Q9H5I5 2752 aa23.85■■□□□ 1.41
CPSF1-202ENST00000527827 CCDC187A0A096LP49 1063 aa23.85■■□□□ 1.41
CPSF1-202ENST00000527827 NTN3O00634 580 aaPredicted RBP23.85■■□□□ 1.41
CPSF1-202ENST00000527827 BUB1O43683 1085 aa23.85■■□□□ 1.41
CPSF1-202ENST00000527827 TNFSF15O95150 251 aa23.85■■□□□ 1.41
CPSF1-202ENST00000527827 TIMP2P16035 220 aa23.85■■□□□ 1.41
CPSF1-202ENST00000527827 CHRNB2P17787 502 aa23.85■■□□□ 1.41
CPSF1-202ENST00000527827 MLLT3P42568 568 aaPredicted RBP23.85■■□□□ 1.41
CPSF1-202ENST00000527827 HDAC4P56524 1084 aa23.85■■□□□ 1.41
CPSF1-202ENST00000527827 FMO1Q01740 532 aa23.85■■□□□ 1.41
CPSF1-202ENST00000527827 PPARDQ03181 441 aa23.85■■□□□ 1.41
CPSF1-202ENST00000527827 CLN3Q13286 438 aa23.85■■□□□ 1.41
CPSF1-202ENST00000527827 SPIDRQ14159 915 aa23.85■■□□□ 1.41
CPSF1-202ENST00000527827 KIAA1614Q5VZ46 1190 aa23.85■■□□□ 1.41
CPSF1-202ENST00000527827 ZNF677Q86XU0 584 aa23.85■■□□□ 1.41
CPSF1-202ENST00000527827 ARL14Q8N4G2 192 aa23.85■■□□□ 1.41
CPSF1-202ENST00000527827 SLC30A5Q8TAD4 765 aa23.85■■□□□ 1.41
CPSF1-202ENST00000527827 WRAP53Q9BUR4 548 aaKnown RBP23.85■■□□□ 1.41
CPSF1-202ENST00000527827 C1QTNF7Q9BXJ2 289 aa23.85■■□□□ 1.41
CPSF1-202ENST00000527827 KLC2Q9H0B6 622 aa23.85■■□□□ 1.41
CPSF1-202ENST00000527827 MFHAS1Q9Y4C4 1052 aa23.85■■□□□ 1.41
CPSF1-202ENST00000527827 ZSCAN5CA6NGD5 496 aaPredicted RBP23.84■■□□□ 1.41
CPSF1-202ENST00000527827 PES1O00541 588 aaKnown RBP23.84■■□□□ 1.41
CPSF1-202ENST00000527827 C6P13671 934 aa23.84■■□□□ 1.41
CPSF1-202ENST00000527827 ERCC5P28715 1186 aaPredicted RBP23.84■■□□□ 1.41
CPSF1-202ENST00000527827 CDR2Q01850 454 aa23.84■■□□□ 1.41
CPSF1-202ENST00000527827 IRF4Q15306 451 aa23.84■■□□□ 1.41
CPSF1-202ENST00000527827 ESRP1Q6NXG1 681 aaKnown RBP23.84■■□□□ 1.41
CPSF1-202ENST00000527827 C11orf70Q9BRQ4 267 aa23.84■■□□□ 1.41
CPSF1-202ENST00000527827 GANQ9H2C0 597 aa23.84■■□□□ 1.41
CPSF1-202ENST00000527827 SAMSN1Q9NSI8 373 aaKnown RBP23.84■■□□□ 1.41
CPSF1-202ENST00000527827 DKK3Q9UBP4 350 aa23.84■■□□□ 1.41
CPSF1-202ENST00000527827 RABGEF1Q9UJ41 708 aa23.84■■□□□ 1.41
CPSF1-202ENST00000527827 GFPT2O94808 682 aa23.83■■□□□ 1.41
CPSF1-202ENST00000527827 RAD51Q06609 339 aa23.83■■□□□ 1.41
CPSF1-202ENST00000527827 PTP4A2Q12974 167 aa23.83■■□□□ 1.41
CPSF1-202ENST00000527827 TMEM52BQ4KMG9 183 aa23.83■■□□□ 1.41
CPSF1-202ENST00000527827 FSTL5Q8N475 847 aaPredicted RBP23.83■■□□□ 1.41
CPSF1-202ENST00000527827 FAM172AQ8WUF8 416 aa23.83■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms