RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 CLEC16AQ2KHT3 1053 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 FAM133BQ5BKY9 247 aaKnown RBP8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 EFHC2Q5JST6 749 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 LIMS2Q7Z4I7 341 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 ZCCHC9Q8N567 271 aaKnown RBP8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 TRAF3IP1Q8TDR0 691 aaPredicted RBP8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 FBF1Q8TES7 1133 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 PRICKLE1Q96MT3 831 aaPredicted RBP8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 PCDH18Q9HCL0 1135 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 CLIC5Q9NZA1 410 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 ARHGAP20Q9P2F6 1191 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 WDR35Q9P2L0 1181 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 SCOCQ9UIL1 159 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 NOCTQ9UK39 431 aaKnown RBP8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 GUCA1BQ9UMX6 200 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 TICRRQ7Z2Z1 1910 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 LAMA5O15230 3695 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 I6L893 689 aaPredicted RBP8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 DNAJC6O75061 913 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 SIN3BO75182 1162 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 GJB3O75712 270 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 CAPN1P07384 714 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 GSTT2P0CG29 244 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 GSTT2BP0CG30 244 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 ACSL1P33121 698 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 MLLT3P42568 568 aaPredicted RBP8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 MAGEA1P43355 309 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 CSNK1EP49674 416 aaKnown RBP8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 CCINQ13939 588 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 CCDC14Q49A88 953 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 USP39Q53GS9 565 aaKnown RBP8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 IGSF11Q5DX21 431 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 IRF2BP2Q7Z5L9 587 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 SLFN11Q7Z7L1 901 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 SCUBE1Q8IWY4 988 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 MCOLN2Q8IZK6 566 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 PNPLA1Q8N8W4 532 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 DTX3Q8N9I9 347 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 SMYD1Q8NB12 490 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 BAP1Q92560 729 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 PRCCQ92733 491 aaPredicted RBP8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 IQCDQ96DY2 449 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 TOE1Q96GM8 510 aaKnown RBP8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 ERGIC2Q96RQ1 377 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 SLX1AQ9BQ83 275 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 DCLK3Q9C098 648 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 SLC2A4RGQ9NR83 387 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 FBXL12Q9NXK8 326 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 UBP1Q9NZI7 540 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 MKL2Q9ULH7 1088 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 WDFY3Q8IZQ1 3526 aa8.01□□□□□ -1.13
LIMCH1-219ENST00000514096 GTPBP10A4D1E9 387 aaKnown RBP8□□□□□ -1.13
LIMCH1-219ENST00000514096 HTR3EA5X5Y0 456 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 PALM2-AKAP2B1ALY0 433 aaPredicted RBP8□□□□□ -1.13
LIMCH1-219ENST00000514096 MID1O15344 667 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 GALR2O43603 387 aaPredicted RBP8□□□□□ -1.13
LIMCH1-219ENST00000514096 LRIG2O94898 1065 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 DNTTP04053 509 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 GFAPP14136 432 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 NDUFV2P19404 249 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 DRD1P21728 446 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 CTNNA2P26232 953 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 PEX5P50542 639 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 PTPRRQ15256 657 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 MUM1Q2TAK8 710 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 BBS9Q3SYG4 887 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 PKDCCQ504Y2 493 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 KCTD6Q8NC69 237 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 DDX1Q92499 740 aaKnown RBP8□□□□□ -1.13
LIMCH1-219ENST00000514096 NHEJ1Q9H9Q4 299 aaPredicted RBP8□□□□□ -1.13
LIMCH1-219ENST00000514096 C12orf4Q9NQ89 552 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 UCKL1Q9NWZ5 548 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 SMG5Q9UPR3 1016 aaKnown RBP8□□□□□ -1.13
LIMCH1-219ENST00000514096 DOCK9Q9BZ29 2069 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 PDCD11Q14690 1871 aaKnown RBP8□□□□□ -1.13
LIMCH1-219ENST00000514096 KIF26AQ9ULI4 1882 aaPredicted RBP8□□□□□ -1.13
LIMCH1-219ENST00000514096 E9PAM4 449 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 ADAM23O75077 832 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 PDE5AO76074 875 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 LMNAP02545 664 aaKnown RBP8□□□□□ -1.13
LIMCH1-219ENST00000514096 UGT2B4P06133 528 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 CD48P09326 243 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 ENPP1P22413 925 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 PPP3CCP48454 512 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 STARD6P59095 220 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 WDR45BQ5MNZ6 344 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 RABGAP1LQ5R372 815 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 ACAD10Q6JQN1 1059 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 BHLHA9Q7RTU4 235 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 SLC15A3Q8IY34 581 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 GSPT2Q8IYD1 628 aaKnown RBP8□□□□□ -1.13
LIMCH1-219ENST00000514096 SPEM1Q8N4L4 309 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 HDDC3Q8N4P3 179 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 BTN2A3PQ96KV6 586 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 TSNARE1Q96NA8 513 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 SMC6Q96SB8 1091 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 WRAP53Q9BUR4 548 aaKnown RBP8□□□□□ -1.13
LIMCH1-219ENST00000514096 ATP13A3Q9H7F0 1226 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 DYRK4Q9NR20 520 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 AP4E1Q9UPM8 1137 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms