RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 KLHL32Q96NJ5 620 aa20.61■□□□□ 0.89
SQSTM1-215ENST00000514093 TMEM74Q96NL1 305 aa20.61■□□□□ 0.89
SQSTM1-215ENST00000514093 CRACR2AQ9BSW2 395 aa20.61■□□□□ 0.89
SQSTM1-215ENST00000514093 SRRTQ9BXP5 876 aaKnown RBP20.61■□□□□ 0.89
SQSTM1-215ENST00000514093 SLC25A18Q9H1K4 315 aa20.61■□□□□ 0.89
SQSTM1-215ENST00000514093 SYNCQ9H7C4 482 aa20.61■□□□□ 0.89
SQSTM1-215ENST00000514093 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP20.61■□□□□ 0.895e-15■■□□□ 14.4
SQSTM1-215ENST00000514093 GPR34Q9UPC5 381 aa20.61■□□□□ 0.89
SQSTM1-215ENST00000514093 IGLV3-10A0A075B6K4 115 aa20.6■□□□□ 0.89
SQSTM1-215ENST00000514093 CTSEP14091 401 aa20.6■□□□□ 0.89
SQSTM1-215ENST00000514093 CCKBRP32239 447 aa20.6■□□□□ 0.89
SQSTM1-215ENST00000514093 ACVRL1P37023 503 aa20.6■□□□□ 0.89
SQSTM1-215ENST00000514093 UBAP2LQ14157 1087 aaKnown RBP20.6■□□□□ 0.89
SQSTM1-215ENST00000514093 ELOCQ15369 112 aa20.6■□□□□ 0.89
SQSTM1-215ENST00000514093 LEKR1Q6ZMV7 388 aa20.6■□□□□ 0.89
SQSTM1-215ENST00000514093 FSTL5Q8N475 847 aaPredicted RBP20.6■□□□□ 0.89
SQSTM1-215ENST00000514093 ZSCAN1Q8NBB4 408 aa20.6■□□□□ 0.89
SQSTM1-215ENST00000514093 TP53I13Q8NBR0 393 aaPredicted RBP20.6■□□□□ 0.89
SQSTM1-215ENST00000514093 JPH3Q8WXH2 748 aaPredicted RBP20.6■□□□□ 0.89
SQSTM1-215ENST00000514093 TBCBQ99426 244 aa20.6■□□□□ 0.89
SQSTM1-215ENST00000514093 EPAS1Q99814 870 aa20.6■□□□□ 0.89
SQSTM1-215ENST00000514093 EDEM3Q9BZQ6 932 aa20.6■□□□□ 0.89
SQSTM1-215ENST00000514093 PLCB1Q9NQ66 1216 aa20.6■□□□□ 0.89
SQSTM1-215ENST00000514093 UTP18Q9Y5J1 556 aaKnown RBP eCLIP20.6■□□□□ 0.89
SQSTM1-215ENST00000514093 SCN8AQ9UQD0 1980 aa20.59■□□□□ 0.89
SQSTM1-215ENST00000514093 AREL1O15033 823 aa20.59■□□□□ 0.89
SQSTM1-215ENST00000514093 TM7SF2O76062 418 aa20.59■□□□□ 0.89
SQSTM1-215ENST00000514093 HK3P52790 923 aa20.59■□□□□ 0.89
SQSTM1-215ENST00000514093 KLHL40Q2TBA0 621 aa20.59■□□□□ 0.89
SQSTM1-215ENST00000514093 ZNF783Q6ZMS7 281 aa20.59■□□□□ 0.89
SQSTM1-215ENST00000514093 TTC7BQ86TV6 843 aa20.59■□□□□ 0.89
SQSTM1-215ENST00000514093 ZNF397Q8NF99 534 aaPredicted RBP20.59■□□□□ 0.89
SQSTM1-215ENST00000514093 NELFBQ8WX92 580 aa20.59■□□□□ 0.89
SQSTM1-215ENST00000514093 FUCA2Q9BTY2 467 aa20.59■□□□□ 0.89
SQSTM1-215ENST00000514093 WRAP53Q9BUR4 548 aaKnown RBP20.59■□□□□ 0.89
SQSTM1-215ENST00000514093 GEMIN8Q9NWZ8 242 aaKnown RBP20.59■□□□□ 0.89
SQSTM1-215ENST00000514093 SEPT3Q9UH03 358 aa20.59■□□□□ 0.89
SQSTM1-215ENST00000514093 PCDHGC3Q9UN70 934 aa20.59■□□□□ 0.89
SQSTM1-215ENST00000514093 PCDHB11Q9Y5F2 797 aa20.59■□□□□ 0.89
SQSTM1-215ENST00000514093 ALPIP09923 528 aa20.58■□□□□ 0.89
SQSTM1-215ENST00000514093 BLKP51451 505 aa20.58■□□□□ 0.89
SQSTM1-215ENST00000514093 IRF4Q15306 451 aa20.58■□□□□ 0.89
SQSTM1-215ENST00000514093 ALG11Q2TAA5 492 aa20.58■□□□□ 0.89
SQSTM1-215ENST00000514093 ENPP7Q6UWV6 458 aa20.58■□□□□ 0.89
SQSTM1-215ENST00000514093 ENOSF1Q7L5Y1 443 aa20.58■□□□□ 0.89
SQSTM1-215ENST00000514093 CCNJLQ8IV13 435 aa20.58■□□□□ 0.89
SQSTM1-215ENST00000514093 SFTPA2Q8IWL1 248 aa20.58■□□□□ 0.89
SQSTM1-215ENST00000514093 CXorf40AQ8TE69 158 aa20.58■□□□□ 0.89
SQSTM1-215ENST00000514093 ZYG11BQ9C0D3 744 aa20.58■□□□□ 0.89
SQSTM1-215ENST00000514093 RRN3Q9NYV6 651 aa20.58■□□□□ 0.89
SQSTM1-215ENST00000514093 STAP1Q9ULZ2 295 aa20.58■□□□□ 0.89
SQSTM1-215ENST00000514093 COQ6Q9Y2Z9 468 aa20.58■□□□□ 0.89
SQSTM1-215ENST00000514093 RELNP78509 3460 aa20.58■□□□□ 0.88
SQSTM1-215ENST00000514093 C9orf172C9J069 976 aa20.57■□□□□ 0.88
SQSTM1-215ENST00000514093 NTRK1P04629 796 aa20.57■□□□□ 0.88
SQSTM1-215ENST00000514093 SLC9A1P19634 815 aa20.57■□□□□ 0.88
SQSTM1-215ENST00000514093 STX17P56962 302 aa20.57■□□□□ 0.88
SQSTM1-215ENST00000514093 ZFP36L1Q07352 338 aaKnown RBP20.57■□□□□ 0.88
SQSTM1-215ENST00000514093 SKIDA1Q1XH10 827 aa20.57■□□□□ 0.88
SQSTM1-215ENST00000514093 MYLK3Q32MK0 819 aa20.57■□□□□ 0.88
SQSTM1-215ENST00000514093 ATXN7L2Q5T6C5 722 aaPredicted RBP20.57■□□□□ 0.88
SQSTM1-215ENST00000514093 KCTD16Q68DU8 428 aa20.57■□□□□ 0.88
SQSTM1-215ENST00000514093 LVRNQ6Q4G3 990 aa20.57■□□□□ 0.88
SQSTM1-215ENST00000514093 GKN2Q86XP6 184 aa20.57■□□□□ 0.88
SQSTM1-215ENST00000514093 DTX1Q86Y01 620 aa20.57■□□□□ 0.88
SQSTM1-215ENST00000514093 PLPP6Q8IY26 295 aa20.57■□□□□ 0.88
SQSTM1-215ENST00000514093 NETO2Q8NC67 525 aa20.57■□□□□ 0.88
SQSTM1-215ENST00000514093 NT5C3BQ969T7 300 aa20.57■□□□□ 0.88
SQSTM1-215ENST00000514093 ISG20Q96AZ6 181 aaKnown RBP20.57■□□□□ 0.88
SQSTM1-215ENST00000514093 ARHGEF26Q96DR7 871 aa20.57■□□□□ 0.88
SQSTM1-215ENST00000514093 NDFIP2Q9NV92 336 aa20.57■□□□□ 0.88
SQSTM1-215ENST00000514093 MAN1B1Q9UKM7 699 aa20.57■□□□□ 0.88
SQSTM1-215ENST00000514093 CTNND2Q9UQB3 1225 aa20.57■□□□□ 0.88
SQSTM1-215ENST00000514093 RNF215Q9Y6U7 377 aa20.57■□□□□ 0.88
SQSTM1-215ENST00000514093 PPP1R3GB7ZBB8 358 aa20.56■□□□□ 0.88
SQSTM1-215ENST00000514093 RASGRP1O95267 797 aa20.56■□□□□ 0.88
SQSTM1-215ENST00000514093 POP4O95707 220 aaKnown RBP20.56■□□□□ 0.88
SQSTM1-215ENST00000514093 F9P00740 461 aa20.56■□□□□ 0.88
SQSTM1-215ENST00000514093 IGFBP7Q16270 282 aa20.56■□□□□ 0.88
SQSTM1-215ENST00000514093 TRIM65Q6PJ69 517 aa20.56■□□□□ 0.88
SQSTM1-215ENST00000514093 GDPD4Q6W3E5 623 aa20.56■□□□□ 0.88
SQSTM1-215ENST00000514093 TMPRSS9Q7Z410 1059 aa20.56■□□□□ 0.88
SQSTM1-215ENST00000514093 OR2AP1Q8NGE2 309 aa20.56■□□□□ 0.88
SQSTM1-215ENST00000514093 PGAP3Q96FM1 320 aaPredicted RBP20.56■□□□□ 0.88
SQSTM1-215ENST00000514093 C1QTNF7Q9BXJ2 289 aa20.56■□□□□ 0.88
SQSTM1-215ENST00000514093 EPN3Q9H201 632 aa20.56■□□□□ 0.88
SQSTM1-215ENST00000514093 PAXBP1Q9Y5B6 917 aa20.56■□□□□ 0.88
SQSTM1-215ENST00000514093 DOCK4Q8N1I0 1966 aa20.55■□□□□ 0.88
SQSTM1-215ENST00000514093 UNC13CQ8NB66 2214 aa20.55■□□□□ 0.88
SQSTM1-215ENST00000514093 TOR1BO14657 336 aa20.55■□□□□ 0.88
SQSTM1-215ENST00000514093 GP1BBP13224 206 aa20.55■□□□□ 0.88
SQSTM1-215ENST00000514093 KRT9P35527 623 aa20.55■□□□□ 0.88
SQSTM1-215ENST00000514093 SNX16P57768 344 aa20.55■□□□□ 0.88
SQSTM1-215ENST00000514093 SRP54P61011 504 aaKnown RBP20.55■□□□□ 0.88
SQSTM1-215ENST00000514093 SNRPD1P62314 119 aaKnown RBP20.55■□□□□ 0.88
SQSTM1-215ENST00000514093 MORC3Q14149 939 aa20.55■□□□□ 0.88
SQSTM1-215ENST00000514093 POLD3Q15054 466 aaPredicted RBP20.55■□□□□ 0.88
SQSTM1-215ENST00000514093 SLC25A52Q3SY17 297 aa20.55■□□□□ 0.88
SQSTM1-215ENST00000514093 PHF19Q5T6S3 580 aa20.55■□□□□ 0.88
SQSTM1-215ENST00000514093 FAM131BQ86XD5 332 aa20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms