RNA–Protein interactions for RNA: ENST00000504195.1

HMGB3P17-201, Transcript of high mobility group box 3 pseudogene 17, humanhuman

BASIC

Gene HMGB3P17, Length 649 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P17-201ENST00000504195 CCDC30Q5VVM6 783 aa2.16□□□□□ -2.06
HMGB3P17-201ENST00000504195 CCDC70Q6NSX1 233 aa2.16□□□□□ -2.06
HMGB3P17-201ENST00000504195 RETSATQ6NUM9 610 aa2.16□□□□□ -2.06
HMGB3P17-201ENST00000504195 CPLX2Q6PUV4 134 aaKnown RBP2.16□□□□□ -2.06
HMGB3P17-201ENST00000504195 EFCAB13Q8IY85 973 aa2.16□□□□□ -2.06
HMGB3P17-201ENST00000504195 ZDHHC23Q8IYP9 409 aa2.16□□□□□ -2.06
HMGB3P17-201ENST00000504195 FAM76AQ8TAV0 307 aa2.16□□□□□ -2.06
HMGB3P17-201ENST00000504195 CLEC4CQ8WTT0 213 aa2.16□□□□□ -2.06
HMGB3P17-201ENST00000504195 BRI3BPQ8WY22 251 aa2.16□□□□□ -2.06
HMGB3P17-201ENST00000504195 TBCBQ99426 244 aa2.16□□□□□ -2.06
HMGB3P17-201ENST00000504195 SLX1AQ9BQ83 275 aa2.16□□□□□ -2.06
HMGB3P17-201ENST00000504195 FRMD8Q9BZ67 464 aaPredicted RBP2.16□□□□□ -2.06
HMGB3P17-201ENST00000504195 TRIM7Q9C029 511 aa2.16□□□□□ -2.06
HMGB3P17-201ENST00000504195 ALDH8A1Q9H2A2 487 aaPredicted RBP2.16□□□□□ -2.06
HMGB3P17-201ENST00000504195 TM7SF3Q9NS93 570 aa2.16□□□□□ -2.06
HMGB3P17-201ENST00000504195 EXOC1Q9NV70 894 aa2.16□□□□□ -2.06
HMGB3P17-201ENST00000504195 IL20Q9NYY1 176 aa2.16□□□□□ -2.06
HMGB3P17-201ENST00000504195 STK26Q9P289 416 aa2.16□□□□□ -2.06
HMGB3P17-201ENST00000504195 CLIP2Q9UDT6 1046 aa2.16□□□□□ -2.06
HMGB3P17-201ENST00000504195 NOL12Q9UGY1 213 aaKnown RBP eCLIP2.16□□□□□ -2.06
HMGB3P17-201ENST00000504195 SLC25A13Q9UJS0 675 aa2.16□□□□□ -2.06
HMGB3P17-201ENST00000504195 FBXO2Q9UK22 296 aaPredicted RBP2.16□□□□□ -2.06
HMGB3P17-201ENST00000504195 AGO1Q9UL18 857 aaKnown RBP2.16□□□□□ -2.06
HMGB3P17-201ENST00000504195 BARX2Q9UMQ3 279 aaPredicted RBP2.16□□□□□ -2.06
HMGB3P17-201ENST00000504195 CNTN6Q9UQ52 1028 aa2.16□□□□□ -2.06
HMGB3P17-201ENST00000504195 RAI2Q9Y5P3 530 aa2.16□□□□□ -2.06
HMGB3P17-201ENST00000504195 PTPRGP23470 1445 aa2.16□□□□□ -2.06
HMGB3P17-201ENST00000504195 EEA1Q15075 1411 aa2.16□□□□□ -2.06
HMGB3P17-201ENST00000504195 AKNAQ7Z591 1439 aa2.16□□□□□ -2.06
HMGB3P17-201ENST00000504195 TMEM94Q12767 1356 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 IGLV5-37A0A075B6J1 123 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 SAA2-SAA4A0A096LPE2 208 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 A0A1W2PRQ8 180 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 GTPBP10A4D1E9 387 aaKnown RBP2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 HSPB6O14558 160 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 CPLX1O14810 134 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 RNMTO43148 476 aaKnown RBP2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 ZBED4O75132 1171 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 IGHDP01880 384 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 NPPBP16860 134 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 TNFSF4P23510 183 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 PRKCHP24723 683 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 ALDH1B1P30837 517 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 RFC1P35251 1148 aaPredicted RBP2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 TNNT3P45378 269 aaPredicted RBP2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 PCP4P48539 62 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 CTCFP49711 727 aaPredicted RBP2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 CLCNKBP51801 687 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 RWDD2BP57060 319 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 FAM3BP58499 235 aaPredicted RBP2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 PMP22Q01453 160 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 BNC1Q01954 994 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 SF3A3Q12874 501 aaKnown RBP eCLIP2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 COX10Q12887 443 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 CHAF1AQ13111 956 aaPredicted RBP2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 E2F5Q15329 346 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 RAB30Q15771 203 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 TMEM95Q3KNT9 176 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 ZACNQ401N2 412 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 PLEKHO1Q53GL0 409 aaPredicted RBP2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 FAM209BQ5JX69 171 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 CCDC122Q5T0U0 273 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 ANKRD45Q5TZF3 282 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 CCAR2Q8N163 923 aaKnown RBP2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 POC1AQ8NBT0 407 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 CENPTQ96BT3 561 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 DHTKD1Q96HY7 919 aaPredicted RBP2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 RSRC1Q96IZ7 334 aaKnown RBP2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 TXNDC15Q96J42 360 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 IL17FQ96PD4 163 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 GSDMAQ96QA5 445 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 BAG1Q99933 345 aaPredicted RBP2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 PYGO2Q9BRQ0 406 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 DCTN5Q9BTE1 182 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 IFT27Q9BW83 186 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 TRIM6Q9C030 488 aaPredicted RBP2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 XRN2Q9H0D6 950 aaKnown RBP eCLIP2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 RPAP3Q9H6T3 665 aaPredicted RBP2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 UPF2Q9HAU5 1272 aaKnown RBP2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 Q9N2J8 555 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 RRAGDQ9NQL2 400 aaPredicted RBP2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 LIN7CQ9NUP9 197 aaKnown RBP2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 ZNHIT6Q9NWK9 470 aaKnown RBP2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 DCAF16Q9NXF7 216 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 C6orf203Q9P0P8 240 aaPredicted RBP2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 SEL1LQ9UBV2 794 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 MALT1Q9UDY8 824 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 CDH22Q9UJ99 828 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 SUFUQ9UMX1 484 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 TRAF3IP3Q9Y228 551 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 ATP6V0A2Q9Y487 856 aa2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 MORC2Q9Y6X9 1032 aaPredicted RBP2.15□□□□□ -2.07
HMGB3P17-201ENST00000504195 PRDM2Q13029 1718 aa2.14□□□□□ -2.07
HMGB3P17-201ENST00000504195 IBTKQ9P2D0 1353 aaPredicted RBP2.14□□□□□ -2.07
HMGB3P17-201ENST00000504195 FSD2A1L4K1 749 aa2.14□□□□□ -2.07
HMGB3P17-201ENST00000504195 SLC38A8A6NNN8 435 aa2.14□□□□□ -2.07
HMGB3P17-201ENST00000504195 KDM4EB2RXH2 506 aaPredicted RBP2.14□□□□□ -2.07
HMGB3P17-201ENST00000504195 F8VZ95 297 aa2.14□□□□□ -2.07
HMGB3P17-201ENST00000504195 SYT5O00445 386 aa2.14□□□□□ -2.07
HMGB3P17-201ENST00000504195 NEMFO60524 1076 aa2.14□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms