RNA–Protein interactions for RNA: ENST00000494993.1

HDDC3-203, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,220 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-203ENST00000494993 CLEC16AQ2KHT3 1053 aa22.37■■□□□ 1.17
HDDC3-203ENST00000494993 EFL1Q7Z2Z2 1120 aaKnown RBP22.37■■□□□ 1.17
HDDC3-203ENST00000494993 VPS36Q86VN1 386 aa22.37■■□□□ 1.17
HDDC3-203ENST00000494993 PHF13Q86YI8 300 aaPredicted RBP22.37■■□□□ 1.17
HDDC3-203ENST00000494993 RBFAQ8N0V3 343 aa22.37■■□□□ 1.17
HDDC3-203ENST00000494993 PYROXD2Q8N2H3 581 aa22.37■■□□□ 1.17
HDDC3-203ENST00000494993 RTL3Q8N8U3 475 aaKnown RBP22.37■■□□□ 1.17
HDDC3-203ENST00000494993 C3orf20Q8ND61 904 aa22.37■■□□□ 1.17
HDDC3-203ENST00000494993 CASKIN2Q8WXE0 1202 aa22.37■■□□□ 1.17
HDDC3-203ENST00000494993 TCEAL2Q9H3H9 227 aaPredicted RBP22.37■■□□□ 1.17
HDDC3-203ENST00000494993 APOBEC3BQ9UH17 382 aaKnown RBP22.37■■□□□ 1.17
HDDC3-203ENST00000494993 HELZ2Q9BYK8 2649 aaKnown RBP22.36■■□□□ 1.17
HDDC3-203ENST00000494993 TEX51A0A1B0GUA7 166 aa22.36■■□□□ 1.17
HDDC3-203ENST00000494993 MMP20O60882 483 aa22.36■■□□□ 1.17
HDDC3-203ENST00000494993 TM7SF2O76062 418 aa22.36■■□□□ 1.17
HDDC3-203ENST00000494993 EPHB2P29323 1055 aa22.36■■□□□ 1.17
HDDC3-203ENST00000494993 ERVPABLB-1P60509 514 aa22.36■■□□□ 1.17
HDDC3-203ENST00000494993 RHOAP61586 193 aa22.36■■□□□ 1.17
HDDC3-203ENST00000494993 YPEL5P62699 121 aa22.36■■□□□ 1.17
HDDC3-203ENST00000494993 ISXQ2M1V0 245 aa22.36■■□□□ 1.17
HDDC3-203ENST00000494993 INO80DQ53TQ3 878 aaPredicted RBP22.36■■□□□ 1.17
HDDC3-203ENST00000494993 EFHC2Q5JST6 749 aa22.36■■□□□ 1.17
HDDC3-203ENST00000494993 PHACTR4Q8IZ21 702 aa22.36■■□□□ 1.17
HDDC3-203ENST00000494993 LSM14AQ8ND56 463 aaKnown RBP22.36■■□□□ 1.17
HDDC3-203ENST00000494993 CXorf40AQ8TE69 158 aa22.36■■□□□ 1.17
HDDC3-203ENST00000494993 NAF1Q96HR8 494 aaKnown RBP22.36■■□□□ 1.17
HDDC3-203ENST00000494993 TBATAQ96M53 351 aa22.36■■□□□ 1.17
HDDC3-203ENST00000494993 C1QTNF7Q9BXJ2 289 aa22.36■■□□□ 1.17
HDDC3-203ENST00000494993 KLC2Q9H0B6 622 aa22.36■■□□□ 1.17
HDDC3-203ENST00000494993 PNMA8BQ9ULN7 279 aaPredicted RBP22.36■■□□□ 1.17
HDDC3-203ENST00000494993 MFHAS1Q9Y4C4 1052 aa22.36■■□□□ 1.17
HDDC3-203ENST00000494993 SIGLEC16A6NMB1 481 aa22.35■■□□□ 1.17
HDDC3-203ENST00000494993 TOR1BO14657 336 aa22.35■■□□□ 1.17
HDDC3-203ENST00000494993 CCP110O43303 1012 aa22.35■■□□□ 1.17
HDDC3-203ENST00000494993 YBEYP58557 167 aaPredicted RBP22.35■■□□□ 1.17
HDDC3-203ENST00000494993 CXADRP78310 365 aa22.35■■□□□ 1.17
HDDC3-203ENST00000494993 C19orf57Q0VDD7 668 aa22.35■■□□□ 1.17
HDDC3-203ENST00000494993 SYCP1Q15431 976 aa22.35■■□□□ 1.17
HDDC3-203ENST00000494993 NR0B2Q15466 257 aa22.35■■□□□ 1.17
HDDC3-203ENST00000494993 PRRT3Q5FWE3 981 aa22.35■■□□□ 1.17
HDDC3-203ENST00000494993 MON1BQ7L1V2 547 aa22.35■■□□□ 1.17
HDDC3-203ENST00000494993 TP53I13Q8NBR0 393 aaPredicted RBP22.35■■□□□ 1.17
HDDC3-203ENST00000494993 NETO2Q8NC67 525 aa22.35■■□□□ 1.17
HDDC3-203ENST00000494993 EPAS1Q99814 870 aa22.35■■□□□ 1.17
HDDC3-203ENST00000494993 BOCQ9BWV1 1114 aa22.35■■□□□ 1.17
HDDC3-203ENST00000494993 ASCL3Q9NQ33 180 aa22.35■■□□□ 1.17
HDDC3-203ENST00000494993 DKK3Q9UBP4 350 aa22.35■■□□□ 1.17
HDDC3-203ENST00000494993 TCRBV5S1A1TA0A578 114 aa22.34■■□□□ 1.17
HDDC3-203ENST00000494993 GCATO75600 419 aa22.34■■□□□ 1.17
HDDC3-203ENST00000494993 C1QL1O75973 258 aa22.34■■□□□ 1.17
HDDC3-203ENST00000494993 TIMP2P16035 220 aa22.34■■□□□ 1.17
HDDC3-203ENST00000494993 ITIH2P19823 946 aa22.34■■□□□ 1.17
HDDC3-203ENST00000494993 COPB1P53618 953 aaKnown RBP22.34■■□□□ 1.17
HDDC3-203ENST00000494993 ADKP55263 362 aaKnown RBP22.34■■□□□ 1.17
HDDC3-203ENST00000494993 C1orf61Q13536 156 aa22.34■■□□□ 1.17
HDDC3-203ENST00000494993 SCYL2Q6P3W7 929 aa22.34■■□□□ 1.17
HDDC3-203ENST00000494993 MACC1Q6ZN28 852 aa22.34■■□□□ 1.17
HDDC3-203ENST00000494993 NEK11Q8NG66 645 aa22.34■■□□□ 1.17
HDDC3-203ENST00000494993 TPCN2Q8NHX9 752 aa22.34■■□□□ 1.17
HDDC3-203ENST00000494993 GLMNQ92990 594 aa22.34■■□□□ 1.17
HDDC3-203ENST00000494993 HMCESQ96FZ2 354 aa22.34■■□□□ 1.17
HDDC3-203ENST00000494993 LRRC61Q9BV99 259 aa22.34■■□□□ 1.17
HDDC3-203ENST00000494993 SLC13A1Q9BZW2 595 aa22.34■■□□□ 1.17
HDDC3-203ENST00000494993 MBNL1Q9NR56 388 aaKnown RBP22.34■■□□□ 1.17
HDDC3-203ENST00000494993 FANCLQ9NW38 375 aa22.34■■□□□ 1.17
HDDC3-203ENST00000494993 FZD10Q9ULW2 581 aa22.34■■□□□ 1.17
HDDC3-203ENST00000494993 WASH4PA8MWX3 477 aa22.33■■□□□ 1.17
HDDC3-203ENST00000494993 RASA4BC9J798 803 aa22.33■■□□□ 1.17
HDDC3-203ENST00000494993 LMO7DNF2Z398 122 aa22.33■■□□□ 1.17
HDDC3-203ENST00000494993 MUSKO15146 869 aa22.33■■□□□ 1.17
HDDC3-203ENST00000494993 RASA4O43374 803 aa22.33■■□□□ 1.17
HDDC3-203ENST00000494993 CREB3O43889 395 aa22.33■■□□□ 1.17
HDDC3-203ENST00000494993 EIF4A3P38919 411 aaKnown RBP22.33■■□□□ 1.17
HDDC3-203ENST00000494993 RPIAP49247 311 aa22.33■■□□□ 1.17
HDDC3-203ENST00000494993 ZNF143P52747 638 aaPredicted RBP22.33■■□□□ 1.17
HDDC3-203ENST00000494993 SERINC3Q13530 473 aa22.33■■□□□ 1.17
HDDC3-203ENST00000494993 KLHL40Q2TBA0 621 aa22.33■■□□□ 1.17
HDDC3-203ENST00000494993 PARP15Q460N3 678 aa22.33■■□□□ 1.17
HDDC3-203ENST00000494993 C3orf38Q5JPI3 329 aa22.33■■□□□ 1.17
HDDC3-203ENST00000494993 PERM1Q5SV97 790 aa22.33■■□□□ 1.17
HDDC3-203ENST00000494993 C6orf132Q5T0Z8 1188 aa22.33■■□□□ 1.17
HDDC3-203ENST00000494993 BROXQ5VW32 411 aa22.33■■□□□ 1.17
HDDC3-203ENST00000494993 DNAJC24Q6P3W2 148 aa22.33■■□□□ 1.17
HDDC3-203ENST00000494993 IGF2-ASQ6U949 168 aa22.33■■□□□ 1.17
HDDC3-203ENST00000494993 CRTC1Q6UUV9 634 aa22.33■■□□□ 1.17
HDDC3-203ENST00000494993 SLC35F3Q8IY50 421 aa22.33■■□□□ 1.17
HDDC3-203ENST00000494993 GRAMD1AQ96CP6 724 aa22.33■■□□□ 1.17
HDDC3-203ENST00000494993 PCMTD1Q96MG8 357 aaPredicted RBP22.33■■□□□ 1.17
HDDC3-203ENST00000494993 WRAP53Q9BUR4 548 aaKnown RBP22.33■■□□□ 1.17
HDDC3-203ENST00000494993 CPEB1Q9BZB8 566 aaKnown RBP22.33■■□□□ 1.17
HDDC3-203ENST00000494993 CATSPERBQ9H7T0 1116 aa22.33■■□□□ 1.17
HDDC3-203ENST00000494993 THSD1Q9NS62 852 aa22.33■■□□□ 1.17
HDDC3-203ENST00000494993 SEPT11Q9NVA2 429 aaKnown RBP22.33■■□□□ 1.17
HDDC3-203ENST00000494993 LHX3Q9UBR4 397 aa22.33■■□□□ 1.17
HDDC3-203ENST00000494993 SATB2Q9UPW6 733 aa22.33■■□□□ 1.17
HDDC3-203ENST00000494993 ENTPD2Q9Y5L3 495 aa22.33■■□□□ 1.17
HDDC3-203ENST00000494993 INSIG1O15503 277 aa22.32■■□□□ 1.16
HDDC3-203ENST00000494993 TCEA3O75764 348 aa22.32■■□□□ 1.16
HDDC3-203ENST00000494993 ANXA6P08133 673 aa22.32■■□□□ 1.16
HDDC3-203ENST00000494993 SUOXP51687 545 aa22.32■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms