RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 CHN2P52757 468 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 CEACAM7Q14002 265 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 ZNF789Q5FWF6 425 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 DENND5AQ6IQ26 1287 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 PGM2L1Q6PCE3 622 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 ZNF354CQ86Y25 554 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 CEP70Q8NHQ1 597 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 SOCS4Q8WXH5 440 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 IL1RL2Q9HB29 575 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 GLOD4Q9HC38 313 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 TLK1Q9UKI8 766 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 NOD1Q9Y239 953 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 MTF2Q9Y483 593 aaPredicted RBP16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 PCDHB12Q9Y5F1 795 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 A0A0U1RQF3 1178 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 GJB3O75712 270 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 CRTAMO95727 393 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 SLC35E2BP0CK96 405 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 ELNP15502 786 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 ETFBP38117 255 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 TSPY1Q01534 308 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 ITKQ08881 620 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 NADK2Q4G0N4 442 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 PQLC1Q8N2U9 271 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 METTL25Q8N6Q8 603 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 FSD1LQ9BXM9 530 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 TRPV6Q9H1D0 765 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 ADAM28Q9UKQ2 775 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 HS3ST4Q9Y661 456 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 AP4B1Q9Y6B7 739 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 ERI2A8K979 691 aaKnown RBP16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 TIMM44O43615 452 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 TRIM13O60858 407 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 DDHD2O94830 711 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 IGLV3-25P01717 112 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 HMBSP08397 361 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 YWHAHQ04917 246 aaPredicted RBP16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 TUSC3Q13454 348 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 ART3Q13508 389 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 MRPL10Q7Z7H8 261 aaKnown RBP16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 CENPLQ8N0S6 344 aaPredicted RBP16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 DIS3LQ8TF46 1054 aaKnown RBP16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 EXT2Q93063 718 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 ATP6V1E2Q96A05 226 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 ISL2Q96A47 359 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 NXNL1Q96CM4 212 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 C1orf21Q9H246 121 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 RRN3Q9NYV6 651 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 RAD54BQ9Y620 910 aa16.69■□□□□ 0.26
CCDC88B-210ENST00000494566 IGHA2P01877 340 aa16.68■□□□□ 0.26
CCDC88B-210ENST00000494566 FAM163BP0C2L3 166 aa16.68■□□□□ 0.26
CCDC88B-210ENST00000494566 CCR1P32246 355 aa16.68■□□□□ 0.26
CCDC88B-210ENST00000494566 SLC1A2P43004 574 aa16.68■□□□□ 0.26
CCDC88B-210ENST00000494566 ARPP19P56211 112 aa16.68■□□□□ 0.26
CCDC88B-210ENST00000494566 USP46P62068 366 aa16.68■□□□□ 0.26
CCDC88B-210ENST00000494566 ANO4Q32M45 955 aa16.68■□□□□ 0.26
CCDC88B-210ENST00000494566 ARTNQ5T4W7 220 aa16.68■□□□□ 0.26
CCDC88B-210ENST00000494566 UGT2A3Q6UWM9 527 aa16.68■□□□□ 0.26
CCDC88B-210ENST00000494566 ARHGAP22Q7Z5H3 698 aa16.68■□□□□ 0.26
CCDC88B-210ENST00000494566 LDB1Q86U70 411 aaPredicted RBP16.68■□□□□ 0.26
CCDC88B-210ENST00000494566 CIR1Q86X95 450 aaPredicted RBP16.68■□□□□ 0.26
CCDC88B-210ENST00000494566 FSTL5Q8N475 847 aaPredicted RBP16.68■□□□□ 0.26
CCDC88B-210ENST00000494566 TMEM151AQ8N4L1 468 aa16.68■□□□□ 0.26
CCDC88B-210ENST00000494566 ZNF512Q96ME7 567 aaPredicted RBP16.68■□□□□ 0.26
CCDC88B-210ENST00000494566 KLHL32Q96NJ5 620 aa16.68■□□□□ 0.26
CCDC88B-210ENST00000494566 C1QTNF1Q9BXJ1 281 aa16.68■□□□□ 0.26
CCDC88B-210ENST00000494566 ARHGEF38Q9NXL2 777 aa16.68■□□□□ 0.26
CCDC88B-210ENST00000494566 XPR1Q9UBH6 696 aa16.68■□□□□ 0.26
CCDC88B-210ENST00000494566 MANSC4A6NHS7 340 aaPredicted RBP16.68■□□□□ 0.26
CCDC88B-210ENST00000494566 E9PAM4 449 aa16.68■□□□□ 0.26
CCDC88B-210ENST00000494566 J3KR12 359 aa16.68■□□□□ 0.26
CCDC88B-210ENST00000494566 FOXD2O60548 495 aaPredicted RBP16.68■□□□□ 0.26
CCDC88B-210ENST00000494566 CLPTM1O96005 669 aa16.68■□□□□ 0.26
CCDC88B-210ENST00000494566 MPOP05164 745 aa16.68■□□□□ 0.26
CCDC88B-210ENST00000494566 ZNF470Q6ECI4 717 aa16.68■□□□□ 0.26
CCDC88B-210ENST00000494566 PKN3Q6P5Z2 889 aa16.68■□□□□ 0.26
CCDC88B-210ENST00000494566 EPGNQ6UW88 154 aa16.68■□□□□ 0.26
CCDC88B-210ENST00000494566 IRGQQ8WZA9 623 aa16.68■□□□□ 0.26
CCDC88B-210ENST00000494566 RPL10LQ96L21 214 aaKnown RBP16.68■□□□□ 0.26
CCDC88B-210ENST00000494566 VAT1Q99536 393 aa16.68■□□□□ 0.26
CCDC88B-210ENST00000494566 GPR22Q99680 433 aa16.68■□□□□ 0.26
CCDC88B-210ENST00000494566 MCMBPQ9BTE3 642 aa16.68■□□□□ 0.26
CCDC88B-210ENST00000494566 KIFC1Q9BW19 673 aa16.68■□□□□ 0.26
CCDC88B-210ENST00000494566 DNAJC28Q9NX36 388 aa16.68■□□□□ 0.26
CCDC88B-210ENST00000494566 KCNU1A8MYU2 1149 aa16.67■□□□□ 0.26
CCDC88B-210ENST00000494566 TNFRSF10BO14763 440 aa16.67■□□□□ 0.26
CCDC88B-210ENST00000494566 TPST1O60507 370 aa16.67■□□□□ 0.26
CCDC88B-210ENST00000494566 CNTN5O94779 1100 aa16.67■□□□□ 0.26
CCDC88B-210ENST00000494566 PCSK6P29122 969 aa16.67■□□□□ 0.26
CCDC88B-210ENST00000494566 MTTPP55157 894 aa16.67■□□□□ 0.26
CCDC88B-210ENST00000494566 PRKCZQ05513 592 aa16.67■□□□□ 0.26
CCDC88B-210ENST00000494566 PIK3R6Q5UE93 754 aa16.67■□□□□ 0.26
CCDC88B-210ENST00000494566 NLRC5Q86WI3 1866 aa16.67■□□□□ 0.26
CCDC88B-210ENST00000494566 THEM5Q8N1Q8 247 aa16.67■□□□□ 0.26
CCDC88B-210ENST00000494566 ABTB1Q969K4 478 aaPredicted RBP16.67■□□□□ 0.26
CCDC88B-210ENST00000494566 PABPC5Q96DU9 382 aaKnown RBP16.67■□□□□ 0.26
CCDC88B-210ENST00000494566 HIC2Q96JB3 615 aa16.67■□□□□ 0.26
CCDC88B-210ENST00000494566 ELMO2Q96JJ3 720 aa16.67■□□□□ 0.26
CCDC88B-210ENST00000494566 OSBPL2Q9H1P3 480 aa16.67■□□□□ 0.26
CCDC88B-210ENST00000494566 SPC25Q9HBM1 224 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms