RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 TMEM248Q9NWD8 314 aa12.82□□□□□ -0.36
SKA1-205ENST00000494518 HPCAL4Q9UM19 191 aa12.82□□□□□ -0.36
SKA1-205ENST00000494518 COQ6Q9Y2Z9 468 aa12.82□□□□□ -0.36
SKA1-205ENST00000494518 C2CD4BA6NLJ0 364 aa12.81□□□□□ -0.36
SKA1-205ENST00000494518 TK2O00142 265 aa12.81□□□□□ -0.36
SKA1-205ENST00000494518 EPHB6O15197 1021 aa12.81□□□□□ -0.36
SKA1-205ENST00000494518 INSIG1O15503 277 aa12.81□□□□□ -0.36
SKA1-205ENST00000494518 CYP1A1P04798 512 aaPredicted RBP12.81□□□□□ -0.36
SKA1-205ENST00000494518 MMP8P22894 467 aa12.81□□□□□ -0.36
SKA1-205ENST00000494518 ERCC5P28715 1186 aaPredicted RBP12.81□□□□□ -0.36
SKA1-205ENST00000494518 ETFBP38117 255 aa12.81□□□□□ -0.36
SKA1-205ENST00000494518 TMPRSS3P57727 454 aa12.81□□□□□ -0.36
SKA1-205ENST00000494518 PFN3P60673 137 aa12.81□□□□□ -0.36
SKA1-205ENST00000494518 POLR2FP61218 127 aaKnown RBP12.81□□□□□ -0.36
SKA1-205ENST00000494518 CDR2Q01850 454 aa12.81□□□□□ -0.36
SKA1-205ENST00000494518 BROXQ5VW32 411 aa12.81□□□□□ -0.36
SKA1-205ENST00000494518 GDPD4Q6W3E5 623 aa12.81□□□□□ -0.36
SKA1-205ENST00000494518 TTC7BQ86TV6 843 aa12.81□□□□□ -0.36
SKA1-205ENST00000494518 SLC35F3Q8IY50 421 aa12.81□□□□□ -0.36
SKA1-205ENST00000494518 DENND6BQ8NEG7 585 aa12.81□□□□□ -0.36
SKA1-205ENST00000494518 CXorf40AQ8TE69 158 aa12.81□□□□□ -0.36
SKA1-205ENST00000494518 RAB7BQ96AH8 199 aa12.81□□□□□ -0.36
SKA1-205ENST00000494518 PCDHB18PQ96TA0 734 aa12.81□□□□□ -0.36
SKA1-205ENST00000494518 LRRC61Q9BV99 259 aa12.81□□□□□ -0.36
SKA1-205ENST00000494518 MAGEH1Q9H213 219 aa12.81□□□□□ -0.36
SKA1-205ENST00000494518 USP29Q9HBJ7 922 aa12.81□□□□□ -0.36
SKA1-205ENST00000494518 SIRPGQ9P1W8 387 aa12.81□□□□□ -0.36
SKA1-205ENST00000494518 SPASTQ9UBP0 616 aa12.81□□□□□ -0.36
SKA1-205ENST00000494518 DACH1Q9UI36 760 aa12.81□□□□□ -0.36
SKA1-205ENST00000494518 ENTPD2Q9Y5L3 495 aa12.81□□□□□ -0.36
SKA1-205ENST00000494518 CSNK1G3Q9Y6M4 447 aa12.81□□□□□ -0.36
SKA1-205ENST00000494518 SCN8AQ9UQD0 1980 aa12.81□□□□□ -0.36
SKA1-205ENST00000494518 AGRPO00253 132 aa12.8□□□□□ -0.36
SKA1-205ENST00000494518 AREL1O15033 823 aa12.8□□□□□ -0.36
SKA1-205ENST00000494518 KDELR3O43731 214 aa12.8□□□□□ -0.36
SKA1-205ENST00000494518 TM7SF2O76062 418 aa12.8□□□□□ -0.36
SKA1-205ENST00000494518 PIGNO95427 931 aa12.8□□□□□ -0.36
SKA1-205ENST00000494518 POP4O95707 220 aaKnown RBP12.8□□□□□ -0.36
SKA1-205ENST00000494518 ANXA6P08133 673 aa12.8□□□□□ -0.36
SKA1-205ENST00000494518 KRT10P13645 584 aa12.8□□□□□ -0.36
SKA1-205ENST00000494518 PLA2G2AP14555 144 aa12.8□□□□□ -0.36
SKA1-205ENST00000494518 RBMS1P29558 406 aaKnown RBP12.8□□□□□ -0.36
SKA1-205ENST00000494518 GEMIN4P57678 1058 aaKnown RBP12.8□□□□□ -0.36
SKA1-205ENST00000494518 RHOAP61586 193 aa12.8□□□□□ -0.36
SKA1-205ENST00000494518 NRG1Q02297 640 aaPredicted RBP12.8□□□□□ -0.36
SKA1-205ENST00000494518 CFHR1Q03591 330 aa12.8□□□□□ -0.36
SKA1-205ENST00000494518 IRF4Q15306 451 aa12.8□□□□□ -0.36
SKA1-205ENST00000494518 KLHL40Q2TBA0 621 aa12.8□□□□□ -0.36
SKA1-205ENST00000494518 FAXCQ5TGI0 409 aa12.8□□□□□ -0.36
SKA1-205ENST00000494518 SMYD5Q6GMV2 418 aa12.8□□□□□ -0.36
SKA1-205ENST00000494518 SCYL2Q6P3W7 929 aa12.8□□□□□ -0.36
SKA1-205ENST00000494518 RBM44Q6ZP01 1051 aaKnown RBP12.8□□□□□ -0.36
SKA1-205ENST00000494518 ARCQ7LC44 396 aa12.8□□□□□ -0.36
SKA1-205ENST00000494518 ZNF677Q86XU0 584 aa12.8□□□□□ -0.36
SKA1-205ENST00000494518 LSMEM2Q8N112 164 aa12.8□□□□□ -0.36
SKA1-205ENST00000494518 CENPTQ96BT3 561 aa12.8□□□□□ -0.36
SKA1-205ENST00000494518 HMCESQ96FZ2 354 aa12.8□□□□□ -0.36
SKA1-205ENST00000494518 GDAP1L1Q96MZ0 367 aa12.8□□□□□ -0.36
SKA1-205ENST00000494518 EPAS1Q99814 870 aa12.8□□□□□ -0.36
SKA1-205ENST00000494518 CLPBQ9H078 707 aa12.8□□□□□ -0.36
SKA1-205ENST00000494518 NUP62CLQ9H1M0 184 aa12.8□□□□□ -0.36
SKA1-205ENST00000494518 NOL6Q9H6R4 1146 aaKnown RBP12.8□□□□□ -0.36
SKA1-205ENST00000494518 THSD1Q9NS62 852 aa12.8□□□□□ -0.36
SKA1-205ENST00000494518 SEPT11Q9NVA2 429 aaKnown RBP12.8□□□□□ -0.36
SKA1-205ENST00000494518 TMEM51Q9NW97 253 aa12.8□□□□□ -0.36
SKA1-205ENST00000494518 GULP1Q9UBP9 304 aa12.8□□□□□ -0.36
SKA1-205ENST00000494518 SALL4Q9UJQ4 1053 aa12.8□□□□□ -0.36
SKA1-205ENST00000494518 EME2A4GXA9 379 aaPredicted RBP12.79□□□□□ -0.36
SKA1-205ENST00000494518 YY2O15391 372 aa12.79□□□□□ -0.36
SKA1-205ENST00000494518 CREB3O43889 395 aa12.79□□□□□ -0.36
SKA1-205ENST00000494518 DXOO77932 396 aaKnown RBP12.79□□□□□ -0.36
SKA1-205ENST00000494518 IGSF6O95976 241 aa12.79□□□□□ -0.36
SKA1-205ENST00000494518 PRKCGP05129 697 aa12.79□□□□□ -0.36
SKA1-205ENST00000494518 KRT3P12035 628 aa12.79□□□□□ -0.36
SKA1-205ENST00000494518 TIMP2P16035 220 aa12.79□□□□□ -0.36
SKA1-205ENST00000494518 TSHRP16473 764 aa12.79□□□□□ -0.36
SKA1-205ENST00000494518 GPD1P21695 349 aa12.79□□□□□ -0.36
SKA1-205ENST00000494518 EEF1GP26641 437 aaKnown RBP12.79□□□□□ -0.36
SKA1-205ENST00000494518 EPHB2P29323 1055 aa12.79□□□□□ -0.36
SKA1-205ENST00000494518 RFC1P35251 1148 aaPredicted RBP12.79□□□□□ -0.36
SKA1-205ENST00000494518 SOX5P35711 763 aa12.79□□□□□ -0.36
SKA1-205ENST00000494518 EIF4A3P38919 411 aaKnown RBP12.79□□□□□ -0.36
SKA1-205ENST00000494518 PTPN9P43378 593 aa12.79□□□□□ -0.36
SKA1-205ENST00000494518 PDX1P52945 283 aa12.79□□□□□ -0.36
SKA1-205ENST00000494518 ERVPABLB-1P60509 514 aa12.79□□□□□ -0.36
SKA1-205ENST00000494518 PTP4A2Q12974 167 aa12.79□□□□□ -0.36
SKA1-205ENST00000494518 LY6DQ14210 128 aa12.79□□□□□ -0.36
SKA1-205ENST00000494518 PTK2BQ14289 1009 aa12.79□□□□□ -0.36
SKA1-205ENST00000494518 C6orf132Q5T0Z8 1188 aa12.79□□□□□ -0.36
SKA1-205ENST00000494518 WDR59Q6PJI9 974 aa12.79□□□□□ -0.36
SKA1-205ENST00000494518 STRADAQ7RTN6 431 aa12.79□□□□□ -0.36
SKA1-205ENST00000494518 ZNF605Q86T29 641 aa12.79□□□□□ -0.36
SKA1-205ENST00000494518 HID1Q8IV36 788 aa12.79□□□□□ -0.36
SKA1-205ENST00000494518 PLPP6Q8IY26 295 aa12.79□□□□□ -0.36
SKA1-205ENST00000494518 KYQ8NBH2 561 aa12.79□□□□□ -0.36
SKA1-205ENST00000494518 TP53I13Q8NBR0 393 aaPredicted RBP12.79□□□□□ -0.36
SKA1-205ENST00000494518 BTN2A2Q8WVV5 523 aa12.79□□□□□ -0.36
SKA1-205ENST00000494518 ASB12Q8WXK4 309 aa12.79□□□□□ -0.36
SKA1-205ENST00000494518 TSACCQ96A04 125 aaPredicted RBP12.79□□□□□ -0.36
SKA1-205ENST00000494518 NCAPGQ9BPX3 1015 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms