RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 OR2A14Q96R47 310 aa4.84□□□□□ -1.64
VPS13A-212ENST00000493341 NAA11Q9BSU3 229 aaPredicted RBP4.84□□□□□ -1.64
VPS13A-212ENST00000493341 XYLT2Q9H1B5 865 aa4.84□□□□□ -1.64
VPS13A-212ENST00000493341 COPS7BQ9H9Q2 264 aaPredicted RBP4.84□□□□□ -1.64
VPS13A-212ENST00000493341 KCTD5Q9NXV2 234 aa4.84□□□□□ -1.64
VPS13A-212ENST00000493341 R3HDM2Q9Y2K5 976 aaKnown RBP4.84□□□□□ -1.64
VPS13A-212ENST00000493341 CLDN16Q9Y5I7 305 aa4.84□□□□□ -1.64
VPS13A-212ENST00000493341 POMT1Q9Y6A1 747 aa4.84□□□□□ -1.64
VPS13A-212ENST00000493341 NPIPB11E5RHQ5 1161 aa4.83□□□□□ -1.64
VPS13A-212ENST00000493341 H0YAE9 185 aa4.83□□□□□ -1.64
VPS13A-212ENST00000493341 SLC25A17O43808 307 aa4.83□□□□□ -1.64
VPS13A-212ENST00000493341 ZNF623O75123 536 aa4.83□□□□□ -1.64
VPS13A-212ENST00000493341 MT-CO3P00414 261 aa4.83□□□□□ -1.64
VPS13A-212ENST00000493341 PLATP00750 562 aa4.83□□□□□ -1.64
VPS13A-212ENST00000493341 TRIM21P19474 475 aaKnown RBP4.83□□□□□ -1.64
VPS13A-212ENST00000493341 GABRB2P47870 512 aa4.83□□□□□ -1.64
VPS13A-212ENST00000493341 CYP2J2P51589 502 aa4.83□□□□□ -1.64
VPS13A-212ENST00000493341 CLCN3P51790 818 aa4.83□□□□□ -1.64
VPS13A-212ENST00000493341 GRAPQ13588 217 aa4.83□□□□□ -1.64
VPS13A-212ENST00000493341 BAATQ14032 418 aaPredicted RBP4.83□□□□□ -1.64
VPS13A-212ENST00000493341 KPNB1Q14974 876 aaKnown RBP4.83□□□□□ -1.64
VPS13A-212ENST00000493341 ZNF449Q6P9G9 518 aa4.83□□□□□ -1.64
VPS13A-212ENST00000493341 DCDC5Q6ZRR9 648 aa4.83□□□□□ -1.64
VPS13A-212ENST00000493341 BCDIN3DQ7Z5W3 292 aaKnown RBP4.83□□□□□ -1.64
VPS13A-212ENST00000493341 LURAP1LQ8IV03 231 aa4.83□□□□□ -1.64
VPS13A-212ENST00000493341 LINC01465Q8N7H1 131 aa4.83□□□□□ -1.64
VPS13A-212ENST00000493341 OR8H1Q8NGG4 311 aa4.83□□□□□ -1.64
VPS13A-212ENST00000493341 NSMCE1Q8WV22 266 aa4.83□□□□□ -1.64
VPS13A-212ENST00000493341 ZNF622Q969S3 477 aaKnown RBP eCLIP4.83□□□□□ -1.64
VPS13A-212ENST00000493341 Q96MF0 132 aa4.83□□□□□ -1.64
VPS13A-212ENST00000493341 NAP1L5Q96NT1 182 aaPredicted RBP4.83□□□□□ -1.64
VPS13A-212ENST00000493341 FSD1LQ9BXM9 530 aa4.83□□□□□ -1.64
VPS13A-212ENST00000493341 PLEKHA4Q9H4M7 779 aa4.83□□□□□ -1.64
VPS13A-212ENST00000493341 SERTAD4Q9NUC0 356 aa4.83□□□□□ -1.64
VPS13A-212ENST00000493341 ARL8BQ9NVJ2 186 aa4.83□□□□□ -1.64
VPS13A-212ENST00000493341 GRHL1Q9NZI5 618 aa4.83□□□□□ -1.64
VPS13A-212ENST00000493341 SEMA5BQ9P283 1151 aa4.83□□□□□ -1.64
VPS13A-212ENST00000493341 DNAJB9Q9UBS3 223 aa4.83□□□□□ -1.64
VPS13A-212ENST00000493341 AMACRQ9UHK6 382 aa4.83□□□□□ -1.64
VPS13A-212ENST00000493341 TNFSF13BQ9Y275 285 aa4.83□□□□□ -1.64
VPS13A-212ENST00000493341 GPRASP1Q5JY77 1395 aa4.83□□□□□ -1.64
VPS13A-212ENST00000493341 TMEM247A6NEH6 219 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 H3BQ06 376 aaPredicted RBP4.82□□□□□ -1.64
VPS13A-212ENST00000493341 WDR46O15213 610 aaKnown RBP4.82□□□□□ -1.64
VPS13A-212ENST00000493341 MPPED1O15442 326 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 MITFO75030 526 aaPredicted RBP4.82□□□□□ -1.64
VPS13A-212ENST00000493341 TTLL1O95922 423 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 NR4A1P22736 598 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 PTAFRP25105 342 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 ZFP36P26651 326 aaKnown RBP4.82□□□□□ -1.64
VPS13A-212ENST00000493341 HOXA13P31271 388 aaPredicted RBP4.82□□□□□ -1.64
VPS13A-212ENST00000493341 MC5RP33032 325 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 FOLR3P41439 243 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 PNLIPRP2P54317 469 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 CLDN2P57739 230 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 TNIP1Q15025 636 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 ZNF674Q2M3X9 581 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 C15orf59Q2T9L4 293 aaPredicted RBP4.82□□□□□ -1.64
VPS13A-212ENST00000493341 CRY2Q49AN0 593 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 HS1BP3Q53T59 392 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 SPDYAQ5MJ70 313 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 C10orf76Q5T2E6 689 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 CST9LP1Q5W188 147 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 IYDQ6PHW0 289 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 NAPRTQ6XQN6 538 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 TBC1D26Q86UD7 250 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 HJURPQ8NCD3 748 aaPredicted RBP4.82□□□□□ -1.64
VPS13A-212ENST00000493341 MOSPD2Q8NHP6 518 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 ASB10Q8WXI3 467 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 SGCDQ92629 289 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 MYEOVQ96EZ4 313 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 MRPL1Q9BYD6 325 aaKnown RBP4.82□□□□□ -1.64
VPS13A-212ENST00000493341 CMAHPQ9Y471 501 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 SPATA31A1Q5TZJ5 1347 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 A0A0U1RQK1 487 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 ZNF320A2RRD8 509 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 LRRC72A6NJI9 287 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 PAPSS1O43252 624 aaPredicted RBP4.82□□□□□ -1.64
VPS13A-212ENST00000493341 DDAH2O95865 285 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 ERCC2P18074 760 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 ITGAXP20702 1163 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 RAP1GAPP47736 663 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 AMPHP49418 695 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 MMP14P50281 582 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 CSE1LP55060 971 aaKnown RBP4.82□□□□□ -1.64
VPS13A-212ENST00000493341 ACSM2AQ08AH3 577 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 SLC14A1Q13336 389 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 IL11RAQ14626 422 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 SLMAPQ14BN4 828 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 CC2D1BQ5T0F9 858 aaKnown RBP4.82□□□□□ -1.64
VPS13A-212ENST00000493341 ACSM2BQ68CK6 577 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 LRRC8EQ6NSJ5 796 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 ANKRD16Q6P6B7 361 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 C11orf88Q6PI97 169 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 PIWIL3Q7Z3Z3 882 aaKnown RBP4.82□□□□□ -1.64
VPS13A-212ENST00000493341 ZNF804AQ7Z570 1209 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 ZCCHC9Q8N567 271 aaKnown RBP4.82□□□□□ -1.64
VPS13A-212ENST00000493341 TBC1D31Q96DN5 1066 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 CCDC114Q96M63 670 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 TMEM68Q96MH6 324 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms