RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 LLGL1Q15334 1064 aa16.46■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 CFAP58Q5T655 872 aa16.46■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 NEK5Q6P3R8 708 aa16.46■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 ZNF662Q6ZS27 426 aa16.46■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 PRPF39Q86UA1 669 aaKnown RBP16.46■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 CAMK1DQ8IU85 385 aa16.46■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 C1orf216Q8TAB5 229 aa16.46■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 HCAR2Q8TDS4 363 aa16.46■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 LRRN4Q8WUT4 740 aa16.46■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 OLFM3Q96PB7 478 aa16.46■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 NUDCD1Q96RS6 583 aa16.46■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 LGMNQ99538 433 aa16.46■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 ORAI3Q9BRQ5 295 aa16.46■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 CAPN10Q9HC96 672 aa16.46■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 SCUBE2Q9NQ36 999 aa16.46■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 HAUS2Q9NVX0 235 aa16.46■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 SLC6A14Q9UN76 642 aa16.46■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 SHROOM3Q8TF72 1996 aa16.46■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.45■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 A0A1W2PQU0 124 aa16.45■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 LNP1A1A4G5 178 aa16.45■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 TSPAN11A1L157 253 aa16.45■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 NEBLO76041 1014 aa16.45■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 PCDH8O95206 1070 aa16.45■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 CCNB1P14635 433 aa16.45■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 CR2P20023 1033 aa16.45■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 MAT2AP31153 395 aaKnown RBP16.45■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 NUDT1P36639 197 aa16.45■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 NR2C2P49116 596 aa16.45■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 PEX5P50542 639 aa16.45■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 MAXP61244 160 aa16.45■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 ARHGAP8P85298 464 aa16.45■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 RALGPS1Q5JS13 557 aa16.45■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 BRAT1Q6PJG6 821 aa16.45■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 BZW1Q7L1Q6 419 aaKnown RBP16.45■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 TTC7BQ86TV6 843 aa16.45■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 HORMAD1Q86X24 394 aa16.45■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 UBL4BQ8N7F7 174 aa16.45■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 ALG3Q92685 438 aa16.45■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 EDEM2Q9BV94 578 aa16.45■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 BRD8Q9H0E9 1235 aa16.45■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 EBF2Q9HAK2 575 aa16.45■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 TM9SF3Q9HD45 589 aa16.45■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 RXFP3Q9NSD7 469 aa16.45■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 AMACRQ9UHK6 382 aa16.45■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 PACSIN2Q9UNF0 486 aaPredicted RBP16.45■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 SLCO1B1Q9Y6L6 691 aa16.45■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 SDK1Q7Z5N4 2213 aa16.45■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 TTC24A2A3L6 582 aaPredicted RBP16.44■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 NEMP1O14524 444 aa16.44■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 GDF9O60383 454 aa16.44■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 PTMAP06454 111 aaKnown RBP16.44■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 TIMP2P16035 220 aa16.44■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 PECAM1P16284 738 aaPredicted RBP16.44■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 ENGP17813 658 aa16.44■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 XPAP23025 273 aaPredicted RBP16.44■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 PTPN7P35236 360 aa16.44■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 CETN2P41208 172 aa16.44■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 AFF3P51826 1226 aaKnown RBP16.44■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 ADCY2Q08462 1091 aa16.44■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 ITKQ08881 620 aa16.44■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 AP1B1Q10567 949 aa16.44■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 SETMARQ53H47 684 aaPredicted RBP16.44■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 LRRC73Q5JTD7 316 aa16.44■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 KIAA1161Q6NSJ0 714 aa16.44■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 BBS12Q6ZW61 710 aa16.44■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 ZSCAN30Q86W11 494 aa16.44■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 P3H4Q92791 437 aa16.44■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 NSMCE3Q96MG7 304 aa16.44■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 SLC6A18Q96N87 628 aa16.44■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 HEMGNQ9BXL5 484 aa16.44■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 POLR1EQ9GZS1 481 aaKnown RBP16.44■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 NOD2Q9HC29 1040 aa16.44■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 LZTFL1Q9NQ48 299 aa16.44■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 FSCN3Q9NQT6 498 aa16.44■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 RBM22Q9NW64 420 aaKnown RBP eCLIP16.44■□□□□ 0.222e-13■■■■■ 57.4
MSH5-SAPCD1-206ENST00000491552 ZFR2Q9UPR6 939 aaKnown RBP16.44■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 DMTF1Q9Y222 760 aa16.44■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 ITM2BQ9Y287 266 aa16.44■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 EFR3BQ9Y2G0 817 aa16.44■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 PLXNA2O75051 1894 aa16.44■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 FAM186AA6NE01 2351 aa16.43■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 PIEZO1Q92508 2521 aa16.43■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 LOC105378220A0A1B0GUY1 285 aaPredicted RBP16.43■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 UPK3BL1B0FP48 263 aa16.43■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 UPK3BL2E5RIL1 263 aa16.43■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 KCNK1O00180 336 aa16.43■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 AREL1O15033 823 aa16.43■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 DDX3YO15523 660 aaKnown RBP16.43■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 SPINT1O43278 529 aa16.43■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 TSPAN6O43657 245 aa16.43■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 SOCS5O75159 536 aa16.43■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 HLA-DQB2P05538 268 aa16.43■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 SYPP08247 313 aa16.43■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 GRIA4P48058 902 aa16.43■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 SUOXP51687 545 aa16.43■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 RPS21P63220 83 aaKnown RBP16.43■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 RACK1P63244 317 aaKnown RBP16.43■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 IFI35P80217 286 aaPredicted RBP16.43■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 TEAD4Q15561 434 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms