RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 PTK2BQ14289 1009 aa12.56□□□□□ -0.4
CPSF3-204ENST00000489403 NR0B2Q15466 257 aa12.56□□□□□ -0.4
CPSF3-204ENST00000489403 PRRT3Q5FWE3 981 aa12.56□□□□□ -0.4
CPSF3-204ENST00000489403 C6orf132Q5T0Z8 1188 aa12.56□□□□□ -0.4
CPSF3-204ENST00000489403 GDPD4Q6W3E5 623 aa12.56□□□□□ -0.4
CPSF3-204ENST00000489403 TTC7BQ86TV6 843 aa12.56□□□□□ -0.4
CPSF3-204ENST00000489403 VPS36Q86VN1 386 aa12.56□□□□□ -0.4
CPSF3-204ENST00000489403 SLC35F3Q8IY50 421 aa12.56□□□□□ -0.4
CPSF3-204ENST00000489403 PYROXD2Q8N2H3 581 aa12.56□□□□□ -0.4
CPSF3-204ENST00000489403 TP53I13Q8NBR0 393 aaPredicted RBP12.56□□□□□ -0.4
CPSF3-204ENST00000489403 NETO2Q8NC67 525 aa12.56□□□□□ -0.4
CPSF3-204ENST00000489403 KCNE4Q8WWG9 221 aa12.56□□□□□ -0.4
CPSF3-204ENST00000489403 NTAN1Q96AB6 310 aa12.56□□□□□ -0.4
CPSF3-204ENST00000489403 ATXN7L3BQ96GX2 97 aa12.56□□□□□ -0.4
CPSF3-204ENST00000489403 PRR11Q96HE9 360 aaPredicted RBP12.56□□□□□ -0.4
CPSF3-204ENST00000489403 VCPIP1Q96JH7 1222 aa12.56□□□□□ -0.4
CPSF3-204ENST00000489403 TBATAQ96M53 351 aa12.56□□□□□ -0.4
CPSF3-204ENST00000489403 EPAS1Q99814 870 aa12.56□□□□□ -0.4
CPSF3-204ENST00000489403 KLC2Q9H0B6 622 aa12.56□□□□□ -0.4
CPSF3-204ENST00000489403 VPS16Q9H269 839 aa12.56□□□□□ -0.4
CPSF3-204ENST00000489403 NOL6Q9H6R4 1146 aaKnown RBP12.56□□□□□ -0.4
CPSF3-204ENST00000489403 NLRC4Q9NPP4 1024 aa12.56□□□□□ -0.4
CPSF3-204ENST00000489403 MBNL1Q9NR56 388 aaKnown RBP12.56□□□□□ -0.4
CPSF3-204ENST00000489403 THSD1Q9NS62 852 aa12.56□□□□□ -0.4
CPSF3-204ENST00000489403 LRP4O75096 1905 aa12.55□□□□□ -0.4
CPSF3-204ENST00000489403 RP1P56715 2156 aa12.55□□□□□ -0.4
CPSF3-204ENST00000489403 ZSCAN5CA6NGD5 496 aaPredicted RBP12.55□□□□□ -0.4
CPSF3-204ENST00000489403 KLK10O43240 276 aa12.55□□□□□ -0.4
CPSF3-204ENST00000489403 TCEA3O75764 348 aa12.55□□□□□ -0.4
CPSF3-204ENST00000489403 TM7SF2O76062 418 aa12.55□□□□□ -0.4
CPSF3-204ENST00000489403 KRT3P12035 628 aa12.55□□□□□ -0.4
CPSF3-204ENST00000489403 GPD1P21695 349 aa12.55□□□□□ -0.4
CPSF3-204ENST00000489403 RFC1P35251 1148 aaPredicted RBP12.55□□□□□ -0.4
CPSF3-204ENST00000489403 PDX1P52945 283 aa12.55□□□□□ -0.4
CPSF3-204ENST00000489403 UCNP55089 124 aa12.55□□□□□ -0.4
CPSF3-204ENST00000489403 ADKP55263 362 aaKnown RBP12.55□□□□□ -0.4
CPSF3-204ENST00000489403 YPEL5P62699 121 aa12.55□□□□□ -0.4
CPSF3-204ENST00000489403 KLHL40Q2TBA0 621 aa12.55□□□□□ -0.4
CPSF3-204ENST00000489403 ARHGAP40Q5TG30 622 aa12.55□□□□□ -0.4
CPSF3-204ENST00000489403 TRIM72Q6ZMU5 477 aa12.55□□□□□ -0.4
CPSF3-204ENST00000489403 MACC1Q6ZN28 852 aa12.55□□□□□ -0.4
CPSF3-204ENST00000489403 RBM44Q6ZP01 1051 aaKnown RBP12.55□□□□□ -0.4
CPSF3-204ENST00000489403 ZNF354CQ86Y25 554 aa12.55□□□□□ -0.4
CPSF3-204ENST00000489403 RTL3Q8N8U3 475 aaKnown RBP12.55□□□□□ -0.4
CPSF3-204ENST00000489403 CXorf40AQ8TE69 158 aa12.55□□□□□ -0.4
CPSF3-204ENST00000489403 GLMNQ92990 594 aa12.55□□□□□ -0.4
CPSF3-204ENST00000489403 GDAP1L1Q96MZ0 367 aa12.55□□□□□ -0.4
CPSF3-204ENST00000489403 PCDHB18PQ96TA0 734 aa12.55□□□□□ -0.4
CPSF3-204ENST00000489403 SELENOOQ9BVL4 669 aa12.55□□□□□ -0.4
CPSF3-204ENST00000489403 TTYH3Q9C0H2 523 aa12.55□□□□□ -0.4
CPSF3-204ENST00000489403 CLPBQ9H078 707 aa12.55□□□□□ -0.4
CPSF3-204ENST00000489403 NUP62CLQ9H1M0 184 aa12.55□□□□□ -0.4
CPSF3-204ENST00000489403 FAM207AQ9NSI2 230 aaPredicted RBP12.55□□□□□ -0.4
CPSF3-204ENST00000489403 PCDHGA8Q9Y5G5 932 aa12.55□□□□□ -0.4
CPSF3-204ENST00000489403 GCN1Q92616 2671 aaKnown RBP12.54□□□□□ -0.4
CPSF3-204ENST00000489403 PMS2P1A4D2B8 440 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 LMO7DNF2Z398 122 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 TOR1BO14657 336 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 YY2O15391 372 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 CCP110O43303 1012 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 KALRNO60229 2985 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 PIGNO95427 931 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 IGSF6O95976 241 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 ANXA6P08133 673 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 CELA2BP08218 269 aaPredicted RBP12.54□□□□□ -0.4
CPSF3-204ENST00000489403 PLA2G2AP14555 144 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 TIMP2P16035 220 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 TSHRP16473 764 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 EPHB2P29323 1055 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 EIF4A3P38919 411 aaKnown RBP12.54□□□□□ -0.4
CPSF3-204ENST00000489403 NSFP46459 744 aaKnown RBP12.54□□□□□ -0.4
CPSF3-204ENST00000489403 RPIAP49247 311 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 RHOAP61586 193 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 SKOR1P84550 965 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 RHDQ02161 417 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 CFHR1Q03591 330 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 RAD51Q06609 339 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 IRF4Q15306 451 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 KRT31Q15323 416 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 INO80DQ53TQ3 878 aaPredicted RBP12.54□□□□□ -0.4
CPSF3-204ENST00000489403 CT47A1Q5JQC4 288 aaPredicted RBP12.54□□□□□ -0.4
CPSF3-204ENST00000489403 FAXCQ5TGI0 409 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 CDKAL1Q5VV42 579 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 WDR59Q6PJI9 974 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 SLFN11Q7Z7L1 901 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 TPCN2Q8NHX9 752 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 CASKIN2Q8WXE0 1202 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 NAT6Q93015 286 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 GRAMD1AQ96CP6 724 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 HMCESQ96FZ2 354 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 EXOC2Q96KP1 924 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 SLC46A1Q96NT5 459 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 CCDC3Q9BQI4 270 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.54□□□□□ -0.4
CPSF3-204ENST00000489403 WRAP53Q9BUR4 548 aaKnown RBP12.54□□□□□ -0.4
CPSF3-204ENST00000489403 C1QTNF7Q9BXJ2 289 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 DPH1Q9BZG8 443 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 SLC13A1Q9BZW2 595 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 ADAM22Q9P0K1 906 aa12.54□□□□□ -0.4
CPSF3-204ENST00000489403 DKK3Q9UBP4 350 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms