RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 HOXD12P35452 270 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 ACTN2P35609 894 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 NUDT1P36639 197 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 MMP13P45452 471 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 RWDD2BP57060 319 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 ARF5P84085 180 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 FOXK2Q01167 660 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 SLC25A11Q02978 314 aaKnown RBP8.15□□□□□ -1.1
USP40-216ENST00000485943 IL10RBQ08334 325 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 ELP6Q0PNE2 266 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 CBLBQ13191 982 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 LBRQ14739 615 aaKnown RBP8.15□□□□□ -1.1
USP40-216ENST00000485943 PDK1Q15118 436 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 CSRP2Q16527 193 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 ASTE1Q2TB18 679 aaPredicted RBP8.15□□□□□ -1.1
USP40-216ENST00000485943 INAVAQ3KP66 663 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 ANKRD20A8PQ5CZ79 823 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 ATXN7L2Q5T6C5 722 aaPredicted RBP8.15□□□□□ -1.1
USP40-216ENST00000485943 NCEH1Q6PIU2 408 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 IL27RAQ6UWB1 636 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 GDPD4Q6W3E5 623 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 DPY19L3Q6ZPD9 716 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 PRR23CQ6ZRP0 262 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 ZNF683Q8IZ20 524 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 RCOR2Q8IZ40 523 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 ZCCHC9Q8N567 271 aaKnown RBP8.15□□□□□ -1.1
USP40-216ENST00000485943 TMIEQ8NEW7 156 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 OR52K2Q8NGK3 314 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 OLIG1Q8TAK6 271 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 NELL1Q92832 810 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 RAB7BQ96AH8 199 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 KLHL32Q96NJ5 620 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 PSMB7Q99436 277 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 DESI2Q9BSY9 194 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 MAGEB5Q9BZ81 275 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 RAB6BQ9NRW1 208 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 NDFIP2Q9NV92 336 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 GOLGA6AQ9NYA3 693 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 EIF2B4Q9UI10 523 aaKnown RBP8.15□□□□□ -1.1
USP40-216ENST00000485943 GUCA1BQ9UMX6 200 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 SLC6A14Q9UN76 642 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 HYOU1Q9Y4L1 999 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 HRH3Q9Y5N1 445 aa8.15□□□□□ -1.1
USP40-216ENST00000485943 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP8.14□□□□□ -1.11
USP40-216ENST00000485943 A0A1W2PQ67 120 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 BCLAF3A2AJT9 711 aaKnown RBP8.14□□□□□ -1.11
USP40-216ENST00000485943 H7C0C1 242 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 I6L893 689 aaPredicted RBP8.14□□□□□ -1.11
USP40-216ENST00000485943 J3QL48 77 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 SMAD6O43541 496 aaKnown RBP8.14□□□□□ -1.11
USP40-216ENST00000485943 BUB1BO60566 1050 aaPredicted RBP8.14□□□□□ -1.11
USP40-216ENST00000485943 PRAMEF11O60813 436 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 OPHN1O60890 802 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 CER1O95813 267 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 ZNF806P0C7X5 589 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 ITGB7P26010 798 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 MAOBP27338 520 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 ACSL1P33121 698 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 PTGER3P43115 390 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 ATP5OP48047 213 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 AFF3P51826 1226 aaKnown RBP8.14□□□□□ -1.11
USP40-216ENST00000485943 ADPRHP54922 357 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 FAM193AP78312 1265 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 CNTN1Q12860 1018 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 ARHGEF7Q14155 803 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 DPYSL3Q14195 570 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 SUZ12Q15022 739 aaKnown RBP8.14□□□□□ -1.11
USP40-216ENST00000485943 MYLK3Q32MK0 819 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 ZNF805Q5CZA5 627 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 TFDP3Q5H9I0 405 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 LRRC38Q5VT99 294 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 C11orf63Q6NUN7 778 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 ZSCAN30Q86W11 494 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 CCDC13Q8IYE1 715 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 FRMD1Q8N878 549 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 SUMF1Q8NBK3 374 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 OR2A12Q8NGT7 310 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 NETO1Q8TDF5 533 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 ALG14Q96F25 216 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 P2RY11Q96G91 374 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 SERAC1Q96JX3 654 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 LMLNQ96KR4 655 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 ZNF599Q96NL3 588 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 ZDHHC5Q9C0B5 715 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 POLR1EQ9GZS1 481 aaKnown RBP8.14□□□□□ -1.11
USP40-216ENST00000485943 TSPAN10Q9H1Z9 355 aaPredicted RBP8.14□□□□□ -1.11
USP40-216ENST00000485943 SLC32A1Q9H598 525 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 PREBQ9HCU5 417 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 NT5MQ9NPB1 228 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 TMEM9BQ9NQ34 198 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 LZTFL1Q9NQ48 299 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 ALG6Q9Y672 507 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 DYNC1LI1Q9Y6G9 523 aaKnown RBP8.14□□□□□ -1.11
USP40-216ENST00000485943 WASF2Q9Y6W5 498 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 WDFY4Q6ZS81 3184 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 CACNA1HO95180 2353 aa8.14□□□□□ -1.11
USP40-216ENST00000485943 PLXND1Q9Y4D7 1925 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 GON4LQ3T8J9 2241 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 METTL12A8MUP2 240 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 MIF4GDA9UHW6 222 aaKnown RBP8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms