RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 PDFQ9HBH1 243 aa12.29□□□□□ -0.44
SQSTM1-207ENST00000481335 DNAJC28Q9NX36 388 aa12.29□□□□□ -0.44
SQSTM1-207ENST00000481335 UBA2Q9UBT2 640 aaPredicted RBP12.29□□□□□ -0.44
SQSTM1-207ENST00000481335 AP4E1Q9UPM8 1137 aa12.29□□□□□ -0.44
SQSTM1-207ENST00000481335 RAXQ9Y2V3 346 aa12.29□□□□□ -0.44
SQSTM1-207ENST00000481335 ACTL7AQ9Y615 435 aa12.29□□□□□ -0.44
SQSTM1-207ENST00000481335 ASXL3Q9C0F0 2248 aa12.28□□□□□ -0.44
SQSTM1-207ENST00000481335 A0A1B0GTH6 734 aa12.28□□□□□ -0.44
SQSTM1-207ENST00000481335 IGLON5A6NGN9 336 aa12.28□□□□□ -0.44
SQSTM1-207ENST00000481335 ARHGAP42A6NI28 874 aa12.28□□□□□ -0.44
SQSTM1-207ENST00000481335 LRRC53A6NM62 1247 aa12.28□□□□□ -0.44
SQSTM1-207ENST00000481335 SPINT1O43278 529 aa12.28□□□□□ -0.44
SQSTM1-207ENST00000481335 GIMD1P0DJR0 217 aa12.28□□□□□ -0.44
SQSTM1-207ENST00000481335 MYBL1P10243 752 aa12.28□□□□□ -0.44
SQSTM1-207ENST00000481335 PSMA2P25787 234 aa12.28□□□□□ -0.44
SQSTM1-207ENST00000481335 CSNK1DP48730 415 aa12.28□□□□□ -0.44
SQSTM1-207ENST00000481335 INSM1Q01101 510 aaPredicted RBP12.28□□□□□ -0.44
SQSTM1-207ENST00000481335 TARDBPQ13148 414 aaKnown RBP eCLIP12.28□□□□□ -0.44
SQSTM1-207ENST00000481335 PDE1CQ14123 709 aaPredicted RBP12.28□□□□□ -0.44
SQSTM1-207ENST00000481335 RFTN1Q14699 578 aaPredicted RBP12.28□□□□□ -0.44
SQSTM1-207ENST00000481335 ACAP1Q15027 740 aa12.28□□□□□ -0.44
SQSTM1-207ENST00000481335 AGERQ15109 404 aa12.28□□□□□ -0.44
SQSTM1-207ENST00000481335 FIGNQ5HY92 759 aa12.28□□□□□ -0.44
SQSTM1-207ENST00000481335 ATXN7L2Q5T6C5 722 aaPredicted RBP12.28□□□□□ -0.44
SQSTM1-207ENST00000481335 ERMARDQ5T6L9 678 aa12.28□□□□□ -0.44
SQSTM1-207ENST00000481335 BRAT1Q6PJG6 821 aa12.28□□□□□ -0.44
SQSTM1-207ENST00000481335 TTC7BQ86TV6 843 aa12.28□□□□□ -0.44
SQSTM1-207ENST00000481335 ZNF548Q8NEK5 533 aaPredicted RBP12.28□□□□□ -0.44
SQSTM1-207ENST00000481335 CENPTQ96BT3 561 aa12.28□□□□□ -0.44
SQSTM1-207ENST00000481335 GRAMD1AQ96CP6 724 aa12.28□□□□□ -0.44
SQSTM1-207ENST00000481335 APOLD1Q96LR9 279 aa12.28□□□□□ -0.44
SQSTM1-207ENST00000481335 ZNF641Q96N77 438 aaPredicted RBP12.28□□□□□ -0.44
SQSTM1-207ENST00000481335 MAGEB5Q9BZ81 275 aa12.28□□□□□ -0.44
SQSTM1-207ENST00000481335 MRPL47Q9HD33 250 aaKnown RBP12.28□□□□□ -0.44
SQSTM1-207ENST00000481335 UCKL1Q9NWZ5 548 aa12.28□□□□□ -0.44
SQSTM1-207ENST00000481335 TMEM63CQ9P1W3 806 aa12.28□□□□□ -0.44
SQSTM1-207ENST00000481335 IPO11Q9UI26 975 aaKnown RBP12.28□□□□□ -0.44
SQSTM1-207ENST00000481335 SALL4Q9UJQ4 1053 aa12.28□□□□□ -0.44
SQSTM1-207ENST00000481335 LRP4O75096 1905 aa12.28□□□□□ -0.44
SQSTM1-207ENST00000481335 BAHCC1Q9P281 2608 aa12.28□□□□□ -0.44
SQSTM1-207ENST00000481335 CFAP69A5D8W1 941 aa12.27□□□□□ -0.45
SQSTM1-207ENST00000481335 TMEM191CA6NGB0 347 aa12.27□□□□□ -0.45
SQSTM1-207ENST00000481335 TMEM110-MUSTN1A8MSY1 372 aa12.27□□□□□ -0.45
SQSTM1-207ENST00000481335 K7ESM1 405 aa12.27□□□□□ -0.45
SQSTM1-207ENST00000481335 EEF2KO00418 725 aaKnown RBP12.27□□□□□ -0.45
SQSTM1-207ENST00000481335 RAD51BO15315 384 aa12.27□□□□□ -0.45
SQSTM1-207ENST00000481335 TEX33O43247 280 aa12.27□□□□□ -0.45
SQSTM1-207ENST00000481335 AQP9O43315 295 aa12.27□□□□□ -0.45
SQSTM1-207ENST00000481335 PRPSAP2O60256 369 aa12.27□□□□□ -0.45
SQSTM1-207ENST00000481335 PRAMEF11O60813 436 aa12.27□□□□□ -0.45
SQSTM1-207ENST00000481335 XPAP23025 273 aaPredicted RBP12.27□□□□□ -0.45
SQSTM1-207ENST00000481335 GKP32189 559 aa12.27□□□□□ -0.45
SQSTM1-207ENST00000481335 HCAR3P49019 387 aa12.27□□□□□ -0.45
SQSTM1-207ENST00000481335 ZNF165P49910 485 aa12.27□□□□□ -0.45
SQSTM1-207ENST00000481335 PEX5P50542 639 aa12.27□□□□□ -0.45
SQSTM1-207ENST00000481335 BLKP51451 505 aa12.27□□□□□ -0.45
SQSTM1-207ENST00000481335 THOP1P52888 689 aa12.27□□□□□ -0.45
SQSTM1-207ENST00000481335 OGDHQ02218 1023 aa12.27□□□□□ -0.45
SQSTM1-207ENST00000481335 ASIC2Q16515 512 aa12.27□□□□□ -0.45
SQSTM1-207ENST00000481335 TMEM52BQ4KMG9 183 aa12.27□□□□□ -0.45
SQSTM1-207ENST00000481335 TMCO4Q5TGY1 634 aa12.27□□□□□ -0.45
SQSTM1-207ENST00000481335 MACC1Q6ZN28 852 aa12.27□□□□□ -0.45
SQSTM1-207ENST00000481335 SDR16C5Q8N3Y7 309 aa12.27□□□□□ -0.45
SQSTM1-207ENST00000481335 LZTR1Q8N653 840 aa12.27□□□□□ -0.45
SQSTM1-207ENST00000481335 TPCN2Q8NHX9 752 aa12.27□□□□□ -0.45
SQSTM1-207ENST00000481335 SNIP1Q8TAD8 396 aaKnown RBP12.27□□□□□ -0.45
SQSTM1-207ENST00000481335 WDR48Q8TAF3 677 aa12.27□□□□□ -0.45
SQSTM1-207ENST00000481335 IQCDQ96DY2 449 aa12.27□□□□□ -0.45
SQSTM1-207ENST00000481335 DEPDC7Q96QD5 511 aa12.27□□□□□ -0.45
SQSTM1-207ENST00000481335 HAUS4Q9H6D7 363 aa12.27□□□□□ -0.45
SQSTM1-207ENST00000481335 SPASTQ9UBP0 616 aa12.27□□□□□ -0.45
SQSTM1-207ENST00000481335 LHX3Q9UBR4 397 aa12.27□□□□□ -0.45
SQSTM1-207ENST00000481335 IGSF10Q6WRI0 2623 aa12.27□□□□□ -0.45
SQSTM1-207ENST00000481335 PTPRQQ9UMZ3 2332 aa12.27□□□□□ -0.45
SQSTM1-207ENST00000481335 RP1P56715 2156 aa12.26□□□□□ -0.45
SQSTM1-207ENST00000481335 FFAR2O15552 330 aa12.26□□□□□ -0.45
SQSTM1-207ENST00000481335 JUNDP17535 347 aa12.26□□□□□ -0.45
SQSTM1-207ENST00000481335 PCK1P35558 622 aa12.26□□□□□ -0.45
SQSTM1-207ENST00000481335 IGFALSP35858 605 aa12.26□□□□□ -0.45
SQSTM1-207ENST00000481335 ABCG1P45844 678 aa12.26□□□□□ -0.45
SQSTM1-207ENST00000481335 NSUN2Q08J23 767 aaKnown RBP eCLIP12.26□□□□□ -0.45
SQSTM1-207ENST00000481335 KLHL30Q0D2K2 578 aa12.26□□□□□ -0.45
SQSTM1-207ENST00000481335 UGP2Q16851 508 aa12.26□□□□□ -0.45
SQSTM1-207ENST00000481335 CFAP58Q5T655 872 aa12.26□□□□□ -0.45
SQSTM1-207ENST00000481335 CDCP2Q5VXM1 449 aa12.26□□□□□ -0.45
SQSTM1-207ENST00000481335 AFMIDQ63HM1 303 aa12.26□□□□□ -0.45
SQSTM1-207ENST00000481335 ERAP2Q6P179 960 aa12.26□□□□□ -0.45
SQSTM1-207ENST00000481335 RFX8Q6ZV50 586 aa12.26□□□□□ -0.45
SQSTM1-207ENST00000481335 PDZD3Q86UT5 571 aa12.26□□□□□ -0.45
SQSTM1-207ENST00000481335 LSMEM2Q8N112 164 aa12.26□□□□□ -0.45
SQSTM1-207ENST00000481335 TP53I13Q8NBR0 393 aaPredicted RBP12.26□□□□□ -0.45
SQSTM1-207ENST00000481335 ATL2Q8NHH9 583 aa12.26□□□□□ -0.45
SQSTM1-207ENST00000481335 SPOCK2Q92563 424 aa12.26□□□□□ -0.45
SQSTM1-207ENST00000481335 GLMNQ92990 594 aa12.26□□□□□ -0.45
SQSTM1-207ENST00000481335 IL12RB2Q99665 862 aa12.26□□□□□ -0.45
SQSTM1-207ENST00000481335 SNRNP25Q9BV90 132 aaKnown RBP12.26□□□□□ -0.45
SQSTM1-207ENST00000481335 KLC2Q9H0B6 622 aa12.26□□□□□ -0.45
SQSTM1-207ENST00000481335 SUV39H2Q9H5I1 410 aa12.26□□□□□ -0.45
SQSTM1-207ENST00000481335 DHX35Q9H5Z1 703 aaKnown RBP12.26□□□□□ -0.45
SQSTM1-207ENST00000481335 ATP13A3Q9H7F0 1226 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms