RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 IL12RB2Q99665 862 aa7.09□□□□□ -1.27
LIMD1-204ENST00000474665 MAK16Q9BXY0 300 aaKnown RBP7.09□□□□□ -1.27
LIMD1-204ENST00000474665 TM6SF2Q9BZW4 377 aa7.09□□□□□ -1.27
LIMD1-204ENST00000474665 CEP44Q9C0F1 390 aa7.09□□□□□ -1.27
LIMD1-204ENST00000474665 CCDC86Q9H6F5 360 aaKnown RBP7.09□□□□□ -1.27
LIMD1-204ENST00000474665 USP29Q9HBJ7 922 aa7.09□□□□□ -1.27
LIMD1-204ENST00000474665 VPS45Q9NRW7 570 aa7.09□□□□□ -1.27
LIMD1-204ENST00000474665 SUN2Q9UH99 717 aa7.09□□□□□ -1.27
LIMD1-204ENST00000474665 HPCAL4Q9UM19 191 aa7.09□□□□□ -1.27
LIMD1-204ENST00000474665 TEP1Q99973 2627 aaKnown RBP7.09□□□□□ -1.27
LIMD1-204ENST00000474665 ASCC3Q8N3C0 2202 aaKnown RBP7.08□□□□□ -1.28
LIMD1-204ENST00000474665 FAM221BA6H8Z2 402 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 GOLGA6L9A6NEM1 432 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 SPINT1O43278 529 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 CEP104O60308 925 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 SYNCRIPO60506 623 aaKnown RBP7.08□□□□□ -1.28
LIMD1-204ENST00000474665 TJP3O95049 919 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 GSRP00390 522 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 JCHAINP01591 159 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 HLA-DQB2P05538 268 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 MMP2P08253 660 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 CCNB1P14635 433 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 MX2P20592 715 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 PTPN3P26045 913 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 CHRNA3P32297 505 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 DRD3P35462 400 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 MAXP61244 160 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 ST8SIA6P61647 398 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 ETF1P62495 437 aaKnown RBP7.08□□□□□ -1.28
LIMD1-204ENST00000474665 IFI35P80217 286 aaPredicted RBP7.08□□□□□ -1.28
LIMD1-204ENST00000474665 HNRNPDQ14103 355 aaKnown RBP7.08□□□□□ -1.28
LIMD1-204ENST00000474665 ELAVL3Q14576 367 aaKnown RBP7.08□□□□□ -1.28
LIMD1-204ENST00000474665 LBRQ14739 615 aaKnown RBP7.08□□□□□ -1.28
LIMD1-204ENST00000474665 PDK1Q15118 436 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 OASLQ15646 514 aaKnown RBP7.08□□□□□ -1.28
LIMD1-204ENST00000474665 MYLK3Q32MK0 819 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 POM121L1PQ3SYA9 428 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 CARD16Q5EG05 197 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 ALG1LQ6GMV1 187 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 SDE2Q6IQ49 451 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 ADAT2Q7Z6V5 191 aaKnown RBP7.08□□□□□ -1.28
LIMD1-204ENST00000474665 ZSWIM9Q86XI8 627 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 ZNF354CQ86Y25 554 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 MMAAQ8IVH4 418 aaKnown RBP7.08□□□□□ -1.28
LIMD1-204ENST00000474665 CCDC13Q8IYE1 715 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 CAMKK1Q8N5S9 505 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 PRELID2Q8N945 189 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 TSTD1Q8NFU3 115 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 OR2AP1Q8NGE2 309 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 ARRDC2Q8TBH0 407 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 C1orf54Q8WWF1 131 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 CASKIN2Q8WXE0 1202 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 RLN3Q8WXF3 142 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 P3H4Q92791 437 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 FAM131CQ96AQ9 280 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 ARRDC3Q96B67 414 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 OSBPL9Q96SU4 736 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 MGME1Q9BQP7 344 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 GORASP1Q9BQQ3 440 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 CEP41Q9BYV8 373 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 TPSD1Q9BZJ3 242 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 SP110Q9HB58 689 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 NOD2Q9HC29 1040 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 SCUBE2Q9NQ36 999 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 USP36Q9P275 1121 aaKnown RBP7.08□□□□□ -1.28
LIMD1-204ENST00000474665 HECAQ9UBI9 543 aaPredicted RBP7.08□□□□□ -1.28
LIMD1-204ENST00000474665 EVLQ9UI08 416 aaPredicted RBP7.08□□□□□ -1.28
LIMD1-204ENST00000474665 MBD1Q9UIS9 605 aaPredicted RBP7.08□□□□□ -1.28
LIMD1-204ENST00000474665 DNPEPQ9ULA0 475 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 TTC7AQ9ULT0 858 aaPredicted RBP7.08□□□□□ -1.28
LIMD1-204ENST00000474665 SNX12Q9UMY4 172 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 SLC8A2Q9UPR5 921 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 INVSQ9Y283 1065 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 TNRC6BQ9UPQ9 1833 aaKnown RBP7.08□□□□□ -1.28
LIMD1-204ENST00000474665 FREM2Q5SZK8 3169 aa7.08□□□□□ -1.28
LIMD1-204ENST00000474665 PIEZO2Q9H5I5 2752 aa7.07□□□□□ -1.28
LIMD1-204ENST00000474665 CCDC163A0A0D9SF12 145 aa7.07□□□□□ -1.28
LIMD1-204ENST00000474665 LNP1A1A4G5 178 aa7.07□□□□□ -1.28
LIMD1-204ENST00000474665 BCLAF3A2AJT9 711 aaKnown RBP7.07□□□□□ -1.28
LIMD1-204ENST00000474665 TRAFD1O14545 582 aaPredicted RBP7.07□□□□□ -1.28
LIMD1-204ENST00000474665 CDX4O14627 284 aaPredicted RBP7.07□□□□□ -1.28
LIMD1-204ENST00000474665 ATXN7O15265 892 aaPredicted RBP7.07□□□□□ -1.28
LIMD1-204ENST00000474665 ALOX15BO15296 676 aa7.07□□□□□ -1.28
LIMD1-204ENST00000474665 MID1O15344 667 aa7.07□□□□□ -1.28
LIMD1-204ENST00000474665 BNIP3LO60238 219 aa7.07□□□□□ -1.28
LIMD1-204ENST00000474665 LEFTY1O75610 366 aa7.07□□□□□ -1.28
LIMD1-204ENST00000474665 POP4O95707 220 aaKnown RBP7.07□□□□□ -1.28
LIMD1-204ENST00000474665 PRLP01236 227 aa7.07□□□□□ -1.28
LIMD1-204ENST00000474665 IGLV3-19P01714 112 aa7.07□□□□□ -1.28
LIMD1-204ENST00000474665 FGGP02679 453 aa7.07□□□□□ -1.28
LIMD1-204ENST00000474665 RBP3P10745 1247 aa7.07□□□□□ -1.28
LIMD1-204ENST00000474665 BCKDHBP21953 392 aa7.07□□□□□ -1.28
LIMD1-204ENST00000474665 RBL1P28749 1068 aa7.07□□□□□ -1.28
LIMD1-204ENST00000474665 SLC8A1P32418 973 aa7.07□□□□□ -1.28
LIMD1-204ENST00000474665 NNMTP40261 264 aa7.07□□□□□ -1.28
LIMD1-204ENST00000474665 MMP13P45452 471 aa7.07□□□□□ -1.28
LIMD1-204ENST00000474665 PSMD8P48556 350 aa7.07□□□□□ -1.28
LIMD1-204ENST00000474665 CSNK1DP48730 415 aa7.07□□□□□ -1.28
LIMD1-204ENST00000474665 TPMTP51580 245 aa7.07□□□□□ -1.28
LIMD1-204ENST00000474665 GDF10P55107 478 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms