RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 SLC25A13Q9UJS0 675 aa3.36□□□□□ -1.87
CCDC88A-212ENST00000474059 MORC2Q9Y6X9 1032 aaPredicted RBP3.36□□□□□ -1.87
CCDC88A-212ENST00000474059 hCG_1642624A0A1W2PR95 340 aa3.35□□□□□ -1.87
CCDC88A-212ENST00000474059 TMEM247A6NEH6 219 aa3.35□□□□□ -1.87
CCDC88A-212ENST00000474059 AQP12BA6NM10 295 aa3.35□□□□□ -1.87
CCDC88A-212ENST00000474059 CHL1O00533 1208 aa3.35□□□□□ -1.87
CCDC88A-212ENST00000474059 CREB3O43889 395 aa3.35□□□□□ -1.87
CCDC88A-212ENST00000474059 VNN2O95498 520 aa3.35□□□□□ -1.87
CCDC88A-212ENST00000474059 CLDN14O95500 239 aa3.35□□□□□ -1.87
CCDC88A-212ENST00000474059 GYS1P13807 737 aa3.35□□□□□ -1.87
CCDC88A-212ENST00000474059 AZU1P20160 251 aa3.35□□□□□ -1.87
CCDC88A-212ENST00000474059 GSTM2P28161 218 aa3.35□□□□□ -1.87
CCDC88A-212ENST00000474059 RPL3P39023 403 aaKnown RBP3.35□□□□□ -1.87
CCDC88A-212ENST00000474059 PEX5P50542 639 aa3.35□□□□□ -1.87
CCDC88A-212ENST00000474059 CLCN3P51790 818 aa3.35□□□□□ -1.87
CCDC88A-212ENST00000474059 PTK2BQ14289 1009 aa3.35□□□□□ -1.87
CCDC88A-212ENST00000474059 SPARCL1Q14515 664 aa3.35□□□□□ -1.87
CCDC88A-212ENST00000474059 GATAD2AQ86YP4 633 aa3.35□□□□□ -1.87
CCDC88A-212ENST00000474059 SCAIQ8N9R8 606 aa3.35□□□□□ -1.87
CCDC88A-212ENST00000474059 ATG16L2Q8NAA4 619 aa3.35□□□□□ -1.87
CCDC88A-212ENST00000474059 TAS1R2Q8TE23 839 aa3.35□□□□□ -1.87
CCDC88A-212ENST00000474059 STYXQ8WUJ0 223 aa3.35□□□□□ -1.87
CCDC88A-212ENST00000474059 IFT27Q9BW83 186 aa3.35□□□□□ -1.87
CCDC88A-212ENST00000474059 RBM4Q9BWF3 364 aaKnown RBP3.35□□□□□ -1.87
CCDC88A-212ENST00000474059 TRIM31Q9BZY9 425 aa3.35□□□□□ -1.87
CCDC88A-212ENST00000474059 ACAD9Q9H845 621 aa3.35□□□□□ -1.87
CCDC88A-212ENST00000474059 FBRSL1Q9HCM7 1045 aaKnown RBP3.35□□□□□ -1.87
CCDC88A-212ENST00000474059 ZNF334Q9HCZ1 680 aaPredicted RBP3.35□□□□□ -1.87
CCDC88A-212ENST00000474059 WDR6Q9NNW5 1121 aaKnown RBP3.35□□□□□ -1.87
CCDC88A-212ENST00000474059 CCNT1O60563 726 aaKnown RBP3.34□□□□□ -1.87
CCDC88A-212ENST00000474059 KRT5P13647 590 aa3.34□□□□□ -1.87
CCDC88A-212ENST00000474059 SERPINF1P36955 418 aa3.34□□□□□ -1.87
CCDC88A-212ENST00000474059 GRK6P43250 576 aa3.34□□□□□ -1.87
CCDC88A-212ENST00000474059 PCP4P48539 62 aa3.34□□□□□ -1.87
CCDC88A-212ENST00000474059 CDK7P50613 346 aa3.34□□□□□ -1.87
CCDC88A-212ENST00000474059 ALKBH1Q13686 389 aaKnown RBP3.34□□□□□ -1.87
CCDC88A-212ENST00000474059 DCTN1Q14203 1278 aa3.34□□□□□ -1.87
CCDC88A-212ENST00000474059 CALCRLQ16602 461 aa3.34□□□□□ -1.87
CCDC88A-212ENST00000474059 CACNA2D3Q8IZS8 1091 aa3.34□□□□□ -1.87
CCDC88A-212ENST00000474059 MYRIPQ8NFW9 859 aa3.34□□□□□ -1.87
CCDC88A-212ENST00000474059 FAM71BQ8TC56 605 aa3.34□□□□□ -1.87
CCDC88A-212ENST00000474059 CCT6BQ92526 530 aa3.34□□□□□ -1.87
CCDC88A-212ENST00000474059 KCNJ9Q92806 393 aa3.34□□□□□ -1.87
CCDC88A-212ENST00000474059 FEM1CQ96JP0 617 aa3.34□□□□□ -1.87
CCDC88A-212ENST00000474059 TEFMQ96QE5 360 aaKnown RBP3.34□□□□□ -1.87
CCDC88A-212ENST00000474059 RMDN3Q96TC7 470 aa3.34□□□□□ -1.87
CCDC88A-212ENST00000474059 CSF3RQ99062 836 aa3.34□□□□□ -1.87
CCDC88A-212ENST00000474059 PRPF18Q99633 342 aaKnown RBP3.34□□□□□ -1.87
CCDC88A-212ENST00000474059 LIN7CQ9NUP9 197 aaKnown RBP3.34□□□□□ -1.87
CCDC88A-212ENST00000474059 DACT1Q9NYF0 836 aa3.34□□□□□ -1.87
CCDC88A-212ENST00000474059 SMARCAL1Q9NZC9 954 aa3.34□□□□□ -1.87
CCDC88A-212ENST00000474059 GRHPRQ9UBQ7 328 aa3.34□□□□□ -1.87
CCDC88A-212ENST00000474059 TCF19Q9Y242 345 aa3.34□□□□□ -1.87
CCDC88A-212ENST00000474059 PCDHGB3Q9Y5G1 929 aa3.34□□□□□ -1.87
CCDC88A-212ENST00000474059 SMAD5-AS1Q9Y6J3 95 aa3.34□□□□□ -1.87
CCDC88A-212ENST00000474059 SYT5O00445 386 aa3.33□□□□□ -1.88
CCDC88A-212ENST00000474059 TNFRSF6BO95407 300 aa3.33□□□□□ -1.88
CCDC88A-212ENST00000474059 ARSAP15289 507 aa3.33□□□□□ -1.88
CCDC88A-212ENST00000474059 KCNA5P22460 613 aa3.33□□□□□ -1.88
CCDC88A-212ENST00000474059 KRTAP10-8P60410 259 aa3.33□□□□□ -1.88
CCDC88A-212ENST00000474059 ZNF155Q12901 538 aaPredicted RBP3.33□□□□□ -1.88
CCDC88A-212ENST00000474059 TMEM95Q3KNT9 176 aa3.33□□□□□ -1.88
CCDC88A-212ENST00000474059 TMEM30BQ3MIR4 351 aa3.33□□□□□ -1.88
CCDC88A-212ENST00000474059 ARHGAP17Q68EM7 881 aa3.33□□□□□ -1.88
CCDC88A-212ENST00000474059 LDHAL6AQ6ZMR3 332 aa3.33□□□□□ -1.88
CCDC88A-212ENST00000474059 ZNF497Q6ZNH5 498 aa3.33□□□□□ -1.88
CCDC88A-212ENST00000474059 GALNT7Q86SF2 657 aa3.33□□□□□ -1.88
CCDC88A-212ENST00000474059 SPATA5Q8NB90 893 aa3.33□□□□□ -1.88
CCDC88A-212ENST00000474059 MCPH1Q8NEM0 835 aa3.33□□□□□ -1.88
CCDC88A-212ENST00000474059 ATOH1Q92858 354 aaPredicted RBP3.33□□□□□ -1.88
CCDC88A-212ENST00000474059 ARRDC3Q96B67 414 aa3.33□□□□□ -1.88
CCDC88A-212ENST00000474059 LITAFQ99732 161 aa3.33□□□□□ -1.88
CCDC88A-212ENST00000474059 CADM1Q9BY67 442 aaKnown RBP3.33□□□□□ -1.88
CCDC88A-212ENST00000474059 NOX4Q9NPH5 578 aa3.33□□□□□ -1.88
CCDC88A-212ENST00000474059 GRHL1Q9NZI5 618 aa3.33□□□□□ -1.88
CCDC88A-212ENST00000474059 LUZP4Q9P127 313 aa3.33□□□□□ -1.88
CCDC88A-212ENST00000474059 NLKQ9UBE8 527 aa3.33□□□□□ -1.88
CCDC88A-212ENST00000474059 KLQ9UEF7 1012 aa3.33□□□□□ -1.88
CCDC88A-212ENST00000474059 IGKV3D-15A0A087WSY6 115 aa3.32□□□□□ -1.88
CCDC88A-212ENST00000474059 EFCAB8A8MWE9 144 aa3.32□□□□□ -1.88
CCDC88A-212ENST00000474059 ACKR2O00590 384 aa3.32□□□□□ -1.88
CCDC88A-212ENST00000474059 FGF17O60258 216 aa3.32□□□□□ -1.88
CCDC88A-212ENST00000474059 VEGFAP15692 232 aaPredicted RBP3.32□□□□□ -1.88
CCDC88A-212ENST00000474059 NOVP48745 357 aa3.32□□□□□ -1.88
CCDC88A-212ENST00000474059 PPM1FP49593 454 aaPredicted RBP3.32□□□□□ -1.88
CCDC88A-212ENST00000474059 FOXO1Q12778 655 aa3.32□□□□□ -1.88
CCDC88A-212ENST00000474059 LPIN1Q14693 890 aa3.32□□□□□ -1.88
CCDC88A-212ENST00000474059 LPAL2Q16609 132 aa3.32□□□□□ -1.88
CCDC88A-212ENST00000474059 GALNTL6Q49A17 601 aa3.32□□□□□ -1.88
CCDC88A-212ENST00000474059 PLEKHO1Q53GL0 409 aaPredicted RBP3.32□□□□□ -1.88
CCDC88A-212ENST00000474059 TMEM268Q5VZI3 342 aa3.32□□□□□ -1.88
CCDC88A-212ENST00000474059 AADACL2Q6P093 401 aa3.32□□□□□ -1.88
CCDC88A-212ENST00000474059 RASGRP2Q7LDG7 609 aa3.32□□□□□ -1.88
CCDC88A-212ENST00000474059 TMC8Q8IU68 726 aa3.32□□□□□ -1.88
CCDC88A-212ENST00000474059 BRSK2Q8IWQ3 736 aa3.32□□□□□ -1.88
CCDC88A-212ENST00000474059 TRIB2Q92519 343 aa3.32□□□□□ -1.88
CCDC88A-212ENST00000474059 RSC1A1Q92681 617 aa3.32□□□□□ -1.88
CCDC88A-212ENST00000474059 TBC1D20Q96BZ9 403 aa3.32□□□□□ -1.88
CCDC88A-212ENST00000474059 EID2BQ96D98 161 aa3.32□□□□□ -1.88
CCDC88A-212ENST00000474059 LTV1Q96GA3 475 aaPredicted RBP3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms