RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 OR2T3Q8NH03 318 aa13.41□□□□□ -0.26
COL6A3-209ENST00000472056 SAMHD1Q9Y3Z3 626 aaKnown RBP13.41□□□□□ -0.26
COL6A3-209ENST00000472056 RAD17O75943 681 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 VPS26BQ4G0F5 336 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 UBE2Q1Q7Z7E8 422 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 DSG4Q86SJ6 1040 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 ART4Q93070 314 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 AIFM2Q9BRQ8 373 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 GPN3Q9UHW5 284 aaPredicted RBP13.4□□□□□ -0.26
COL6A3-209ENST00000472056 EPB42P16452 691 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 TRIM32Q13049 653 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 C11orf74Q86VG3 221 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 RASAL3Q86YV0 1011 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 LRRC20Q8TCA0 184 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 SLC9A6Q92581 669 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 CERS2Q96G23 380 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 PRR12Q9ULL5 1215 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 PNMA8BQ9ULN7 279 aaPredicted RBP13.4□□□□□ -0.26
COL6A3-209ENST00000472056 GIT1Q9Y2X7 761 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 DIP2AQ14689 1571 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 ZSCAN5CA6NGD5 496 aaPredicted RBP13.4□□□□□ -0.26
COL6A3-209ENST00000472056 NADKO95544 446 aaPredicted RBP13.4□□□□□ -0.26
COL6A3-209ENST00000472056 HUNKP57058 714 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 TROAPQ12815 778 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 CBX3Q13185 183 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 DDX39BQ13838 428 aaKnown RBP13.4□□□□□ -0.26
COL6A3-209ENST00000472056 RETSATQ6NUM9 610 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 USP43Q70EL4 1123 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 KBTBD2Q8IY47 623 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 PGAM4Q8N0Y7 254 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 CCDC107Q8WV48 283 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 VPS35Q96QK1 796 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 CRAMP1Q96RY5 1269 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 PPP1R16BQ96T49 567 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 ZNF304Q9HCX3 659 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 TRNAU1APQ9NX07 287 aaKnown RBP13.4□□□□□ -0.26
COL6A3-209ENST00000472056 AXLP30530 894 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 RBM34P42696 430 aaKnown RBP13.4□□□□□ -0.26
COL6A3-209ENST00000472056 GIT2Q14161 759 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 CYP2R1Q6VVX0 501 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 MSANTD1Q6ZTZ1 278 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 ARMC8Q8IUR7 673 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 ERI1Q8IV48 349 aaKnown RBP13.4□□□□□ -0.26
COL6A3-209ENST00000472056 REXO5Q96IC2 774 aaKnown RBP13.4□□□□□ -0.26
COL6A3-209ENST00000472056 PHF12Q96QT6 1004 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 TTYH1Q9H313 450 aaPredicted RBP13.4□□□□□ -0.26
COL6A3-209ENST00000472056 POMKQ9H5K3 350 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 ROBO3Q96MS0 1386 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 SIGLEC16A6NMB1 481 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 POLRMTO00411 1230 aaKnown RBP13.4□□□□□ -0.26
COL6A3-209ENST00000472056 STAG3L1P0CL83 205 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 GPR107Q5VW38 600 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 GMCL1Q96IK5 515 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 KANSL3Q9P2N6 904 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 NPHP4O75161 1426 aaPredicted RBP13.4□□□□□ -0.26
COL6A3-209ENST00000472056 KIF13AQ9H1H9 1805 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 TPP1O14773 563 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 KRT36O76013 467 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 OR6A2O95222 327 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 PPP4CP60510 307 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 CAMK1Q14012 370 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 VN1R5Q7Z5H4 357 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.4□□□□□ -0.26
COL6A3-209ENST00000472056 ALLCQ8N6M5 410 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 GMCL1P1Q8NEA9 526 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 MED8Q96G25 268 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 AP1S3Q96PC3 154 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 S100A14Q9HCY8 104 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 TMEM9Q9P0T7 183 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 PCDHB7Q9Y5E2 793 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 TLL2Q9Y6L7 1015 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 CTDNEP1O95476 244 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 NDUFB10O96000 172 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 PSEN1P49768 467 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 POU6F1Q14863 301 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 C4orf19Q8IY42 314 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 PHACTR4Q8IZ21 702 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 TTC29Q8NA56 475 aaPredicted RBP13.4□□□□□ -0.26
COL6A3-209ENST00000472056 FBXO32Q969P5 355 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 PTGFRNQ9P2B2 879 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 GULP1Q9UBP9 304 aa13.4□□□□□ -0.26
COL6A3-209ENST00000472056 SCAF8Q9UPN6 1271 aaKnown RBP13.4□□□□□ -0.26
COL6A3-209ENST00000472056 CAPN15O75808 1086 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 HNRNPH3P31942 346 aaKnown RBP13.39□□□□□ -0.27
COL6A3-209ENST00000472056 AGMOQ6ZNB7 445 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 THAP5Q7Z6K1 395 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 PIH1D2Q8WWB5 315 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 AGXT2Q9BYV1 514 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 ADAM33Q9BZ11 813 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 ZNF214Q9UL59 606 aaPredicted RBP13.39□□□□□ -0.27
COL6A3-209ENST00000472056 FAM237AA0A1B0GTK4 181 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 ULK1O75385 1050 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 STOMP27105 288 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 RAB10P61026 200 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 IFI35P80217 286 aaPredicted RBP13.39□□□□□ -0.27
COL6A3-209ENST00000472056 ZZZ3Q8IYH5 903 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 ZFAND2BQ8WV99 257 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 PHF21BQ96EK2 531 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 CEP170BQ9Y4F5 1589 aaPredicted RBP13.39□□□□□ -0.27
COL6A3-209ENST00000472056 CBWD3Q5JTY5 395 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms