RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	ENGASE	Q8NFI3	743 aa		4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	CADM4	Q8NFZ8	388 aa		4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	GABPB2	Q8TAK5	448 aa	Predicted RBP	4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	KCNG4	Q8TDN1	519 aa		4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	CREB3L4	Q8TEY5	395 aa		4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	FAM149B1	Q96BN6	582 aa		4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	YME1L1	Q96TA2	773 aa		4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	CHCHD6	Q9BRQ6	235 aa		4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	MUC13	Q9H3R2	512 aa		4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	PLEKHA5	Q9HAU0	1116 aa		4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	ANKRD10	Q9NXR5	420 aa		4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	NDRG3	Q9UGV2	375 aa		4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	LAS1L	Q9Y4W2	734 aa	Known RBP	4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044	PIAS3	Q9Y6X2	628 aa		4.02	□□□□□ -1.77
PTCD3-209	ENST00000472044		A0A0U1RQF3	1178 aa		4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	TMEM272	A0A1B0GTI8	110 aa		4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	DNAJC9-AS1	A6NH13	148 aa		4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	LRRC53	A6NM62	1247 aa		4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	KLRF2	D3W0D1	207 aa		4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	USP17L23	D6RBM5	183 aa		4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	PAGE4	O60829	102 aa		4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	ZBED4	O75132	1171 aa		4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	MT-CYB	P00156	380 aa	Predicted RBP	4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	TF	P02787	698 aa		4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	ACADM	P11310	421 aa		4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	CDH2	P19022	906 aa	Predicted RBP	4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	TNFRSF1B	P20333	461 aa		4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	GNLY	P22749	145 aa		4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	ABCG1	P45844	678 aa		4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	CXCR3	P49682	368 aa		4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	RARS	P54136	660 aa	Known RBP	4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	NAP1L1	P55209	391 aa	Known RBP	4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	CDH12	P55289	794 aa		4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	OLR1	P78380	273 aa		4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	FAM27E3	Q08E93	113 aa		4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	TMEM115	Q12893	351 aa	Predicted RBP	4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	KLF9	Q13886	244 aa	Predicted RBP	4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	LPIN1	Q14693	890 aa		4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	VEPH1	Q14D04	833 aa		4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	TRIL	Q7L0X0	811 aa		4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	ZNF575	Q86XF7	245 aa		4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	KIAA2013	Q8IYS2	634 aa		4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	CEP76	Q8TAP6	659 aa		4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	SLC35F5	Q8WV83	523 aa		4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	INPP5D	Q92835	1189 aa		4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	PERP	Q96FX8	193 aa		4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	PIP5K1A	Q99755	562 aa		4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	C1QTNF7	Q9BXJ2	289 aa		4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	ASAH2	Q9NR71	780 aa		4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	DIAPH3	Q9NSV4	1193 aa		4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	ZBTB40	Q9NUA8	1239 aa		4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	ZNF70	Q9UC06	446 aa	Predicted RBP	4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	SLCO3A1	Q9UIG8	710 aa		4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	INTS6	Q9UL03	887 aa	Known RBP	4.01	□□□□□ -1.77
PTCD3-209	ENST00000472044	TTC3	P53804	2025 aa		4	□□□□□ -1.77
PTCD3-209	ENST00000472044	UTY	O14607	1347 aa		4	□□□□□ -1.77
PTCD3-209	ENST00000472044	IGLV5-39	A0A0G2JS06	123 aa		4	□□□□□ -1.77
PTCD3-209	ENST00000472044		A0A1W2PRG0	241 aa		4	□□□□□ -1.77
PTCD3-209	ENST00000472044	ANKRD18B	A2A2Z9	1011 aa		4	□□□□□ -1.77
PTCD3-209	ENST00000472044	HSPB2	A8KAH6	182 aa		4	□□□□□ -1.77
PTCD3-209	ENST00000472044	NPIPB11	E5RHQ5	1161 aa		4	□□□□□ -1.77
PTCD3-209	ENST00000472044	PPEF2	O14830	753 aa		4	□□□□□ -1.77
PTCD3-209	ENST00000472044	KLK8	O60259	260 aa		4	□□□□□ -1.77
PTCD3-209	ENST00000472044	RNASEH2A	O75792	299 aa	Known RBP	4	□□□□□ -1.77
PTCD3-209	ENST00000472044	SPARC	P09486	303 aa		4	□□□□□ -1.77
PTCD3-209	ENST00000472044	ARSB	P15848	533 aa		4	□□□□□ -1.77
PTCD3-209	ENST00000472044	EDN2	P20800	178 aa		4	□□□□□ -1.77
PTCD3-209	ENST00000472044	CDA	P32320	146 aa		4	□□□□□ -1.77
PTCD3-209	ENST00000472044	ARL3	P36405	182 aa		4	□□□□□ -1.77
PTCD3-209	ENST00000472044	PPP3CC	P48454	512 aa		4	□□□□□ -1.77
PTCD3-209	ENST00000472044	GNAQ	P50148	359 aa		4	□□□□□ -1.77
PTCD3-209	ENST00000472044	CLNS1A	P54105	237 aa	Known RBP	4	□□□□□ -1.77
PTCD3-209	ENST00000472044	HDAC4	P56524	1084 aa		4	□□□□□ -1.77
PTCD3-209	ENST00000472044	SELENOV	P59797	346 aa		4	□□□□□ -1.77
PTCD3-209	ENST00000472044	MRPS21	P82921	87 aa	Known RBP	4	□□□□□ -1.77
PTCD3-209	ENST00000472044	MAMLD1	Q13495	774 aa		4	□□□□□ -1.77
PTCD3-209	ENST00000472044	SHB	Q15464	509 aa		4	□□□□□ -1.77
PTCD3-209	ENST00000472044	HSPB2	Q16082	182 aa		4	□□□□□ -1.77
PTCD3-209	ENST00000472044	DCAF6	Q58WW2	860 aa		4	□□□□□ -1.77
PTCD3-209	ENST00000472044	WDR78	Q5VTH9	848 aa		4	□□□□□ -1.77
PTCD3-209	ENST00000472044	SPATA1	Q5VX52	437 aa		4	□□□□□ -1.77
PTCD3-209	ENST00000472044	BRINP3	Q76B58	766 aa		4	□□□□□ -1.77
PTCD3-209	ENST00000472044	PATL1	Q86TB9	770 aa	Known RBP	4	□□□□□ -1.77
PTCD3-209	ENST00000472044	CNTROB	Q8N137	903 aa		4	□□□□□ -1.77
PTCD3-209	ENST00000472044	ZNF548	Q8NEK5	533 aa	Predicted RBP	4	□□□□□ -1.77
PTCD3-209	ENST00000472044	LPAR1	Q92633	364 aa		4	□□□□□ -1.77
PTCD3-209	ENST00000472044	ARHGEF2	Q92974	986 aa	Known RBP	4	□□□□□ -1.77
PTCD3-209	ENST00000472044	TMEM18	Q96B42	140 aa		4	□□□□□ -1.77
PTCD3-209	ENST00000472044	INTS12	Q96CB8	462 aa	Known RBP	4	□□□□□ -1.77
PTCD3-209	ENST00000472044	ITPA	Q9BY32	194 aa		4	□□□□□ -1.77
PTCD3-209	ENST00000472044	NPFFR1	Q9GZQ6	430 aa		4	□□□□□ -1.77
PTCD3-209	ENST00000472044	SPRTN	Q9H040	489 aa	Predicted RBP	4	□□□□□ -1.77
PTCD3-209	ENST00000472044	ISCU	Q9H1K1	167 aa		4	□□□□□ -1.77
PTCD3-209	ENST00000472044	SCPEP1	Q9HB40	452 aa		4	□□□□□ -1.77
PTCD3-209	ENST00000472044	SMYD2	Q9NRG4	433 aa		4	□□□□□ -1.77
PTCD3-209	ENST00000472044	KRT84	Q9NSB2	600 aa		4	□□□□□ -1.77
PTCD3-209	ENST00000472044	SIRT3	Q9NTG7	399 aa	Predicted RBP	4	□□□□□ -1.77
PTCD3-209	ENST00000472044	HAO1	Q9UJM8	370 aa		4	□□□□□ -1.77
PTCD3-209	ENST00000472044	FAM96B	Q9Y3D0	163 aa		4	□□□□□ -1.77
PTCD3-209	ENST00000472044	CAPN7	Q9Y6W3	813 aa		4	□□□□□ -1.77

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