RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 TPI1P60174 286 aa12.13□□□□□ -0.47
SQSTM1-206ENST00000466342 SERINC3Q13530 473 aa12.13□□□□□ -0.47
SQSTM1-206ENST00000466342 DPYSL2Q16555 572 aa12.13□□□□□ -0.47
SQSTM1-206ENST00000466342 CA9Q16790 459 aa12.13□□□□□ -0.47
SQSTM1-206ENST00000466342 SMTNL2Q2TAL5 461 aa12.13□□□□□ -0.47
SQSTM1-206ENST00000466342 RNF219Q5W0B1 726 aaPredicted RBP12.13□□□□□ -0.47
SQSTM1-206ENST00000466342 TXNRD3NBQ6F5E7 133 aa12.13□□□□□ -0.47
SQSTM1-206ENST00000466342 RWDD4Q6NW29 188 aaKnown RBP12.13□□□□□ -0.47
SQSTM1-206ENST00000466342 CCDC81Q6ZN84 652 aa12.13□□□□□ -0.47
SQSTM1-206ENST00000466342 USP30Q70CQ3 517 aa12.13□□□□□ -0.47
SQSTM1-206ENST00000466342 TFAP2DQ7Z6R9 452 aa12.13□□□□□ -0.47
SQSTM1-206ENST00000466342 NLRP14Q86W24 1093 aa12.13□□□□□ -0.47
SQSTM1-206ENST00000466342 CPNE8Q86YQ8 564 aa12.13□□□□□ -0.47
SQSTM1-206ENST00000466342 APCDD1Q8J025 514 aa12.13□□□□□ -0.47
SQSTM1-206ENST00000466342 TXLNBQ8N3L3 684 aa12.13□□□□□ -0.47
SQSTM1-206ENST00000466342 OR52K2Q8NGK3 314 aa12.13□□□□□ -0.47
SQSTM1-206ENST00000466342 PDLIM2Q96JY6 352 aa12.13□□□□□ -0.47
SQSTM1-206ENST00000466342 CALR3Q96L12 384 aaKnown RBP12.13□□□□□ -0.47
SQSTM1-206ENST00000466342 SLC6A18Q96N87 628 aa12.13□□□□□ -0.47
SQSTM1-206ENST00000466342 KCTD15Q96SI1 283 aaPredicted RBP12.13□□□□□ -0.47
SQSTM1-206ENST00000466342 ZWILCHQ9H900 591 aa12.13□□□□□ -0.47
SQSTM1-206ENST00000466342 ASCL3Q9NQ33 180 aa12.13□□□□□ -0.47
SQSTM1-206ENST00000466342 GDF3Q9NR23 364 aa12.13□□□□□ -0.47
SQSTM1-206ENST00000466342 THSD1Q9NS62 852 aa12.13□□□□□ -0.47
SQSTM1-206ENST00000466342 STARD5Q9NSY2 213 aa12.13□□□□□ -0.47
SQSTM1-206ENST00000466342 SLCO3A1Q9UIG8 710 aa12.13□□□□□ -0.47
SQSTM1-206ENST00000466342 DOCK9Q9BZ29 2069 aa12.12□□□□□ -0.47
SQSTM1-206ENST00000466342 TTC34A8MYJ7 566 aa12.12□□□□□ -0.47
SQSTM1-206ENST00000466342 BUB1BO60566 1050 aaPredicted RBP12.12□□□□□ -0.47
SQSTM1-206ENST00000466342 RHOCP08134 193 aa12.12□□□□□ -0.47
SQSTM1-206ENST00000466342 RARAP10276 462 aa12.12□□□□□ -0.47
SQSTM1-206ENST00000466342 MYF5P13349 255 aa12.12□□□□□ -0.47
SQSTM1-206ENST00000466342 MZF1P28698 734 aaPredicted RBP12.12□□□□□ -0.47
SQSTM1-206ENST00000466342 EPHB2P29323 1055 aa12.12□□□□□ -0.47
SQSTM1-206ENST00000466342 OR1E1P30953 314 aa12.12□□□□□ -0.47
SQSTM1-206ENST00000466342 SLC1A1P43005 524 aa12.12□□□□□ -0.47
SQSTM1-206ENST00000466342 CTSOP43234 321 aaPredicted RBP12.12□□□□□ -0.47
SQSTM1-206ENST00000466342 MAPKAPK2P49137 400 aa12.12□□□□□ -0.47
SQSTM1-206ENST00000466342 ZNF135P52742 658 aaPredicted RBP12.12□□□□□ -0.47
SQSTM1-206ENST00000466342 TAS2R40P59535 323 aa12.12□□□□□ -0.47
SQSTM1-206ENST00000466342 NFKB2Q00653 900 aa12.12□□□□□ -0.47
SQSTM1-206ENST00000466342 PROX2Q3B8N5 592 aa12.12□□□□□ -0.47
SQSTM1-206ENST00000466342 C4orf17Q53FE4 359 aa12.12□□□□□ -0.47
SQSTM1-206ENST00000466342 C9orf64Q5T6V5 341 aa12.12□□□□□ -0.47
SQSTM1-206ENST00000466342 ZNF783Q6ZMS7 281 aa12.12□□□□□ -0.47
SQSTM1-206ENST00000466342 KANSL1Q7Z3B3 1105 aa12.12□□□□□ -0.47
SQSTM1-206ENST00000466342 HSPH1Q92598 858 aa12.12□□□□□ -0.47
SQSTM1-206ENST00000466342 ALG14Q96F25 216 aa12.12□□□□□ -0.47
SQSTM1-206ENST00000466342 CCDC97Q96F63 343 aaPredicted RBP12.12□□□□□ -0.47
SQSTM1-206ENST00000466342 RPL10LQ96L21 214 aaKnown RBP12.12□□□□□ -0.47
SQSTM1-206ENST00000466342 FAM129BQ96TA1 746 aa12.12□□□□□ -0.47
SQSTM1-206ENST00000466342 LACRTQ9GZZ8 138 aa12.12□□□□□ -0.47
SQSTM1-206ENST00000466342 PABPC3Q9H361 631 aaKnown RBP12.12□□□□□ -0.47
SQSTM1-206ENST00000466342 MTG2Q9H4K7 406 aa12.12□□□□□ -0.47
SQSTM1-206ENST00000466342 CATSPERBQ9H7T0 1116 aa12.12□□□□□ -0.47
SQSTM1-206ENST00000466342 ERVMER34-1Q9H9K5 563 aa12.12□□□□□ -0.47
SQSTM1-206ENST00000466342 EBF2Q9HAK2 575 aa12.12□□□□□ -0.47
SQSTM1-206ENST00000466342 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.12□□□□□ -0.47
SQSTM1-206ENST00000466342 TMEM248Q9NWD8 314 aa12.12□□□□□ -0.47
SQSTM1-206ENST00000466342 SEPT3Q9UH03 358 aa12.12□□□□□ -0.47
SQSTM1-206ENST00000466342 SALL4Q9UJQ4 1053 aa12.12□□□□□ -0.47
SQSTM1-206ENST00000466342 ADGRG1Q9Y653 693 aa12.12□□□□□ -0.47
SQSTM1-206ENST00000466342 UTP20O75691 2785 aaKnown RBP12.11□□□□□ -0.47
SQSTM1-206ENST00000466342 A0A1W2PR77 199 aa12.11□□□□□ -0.47
SQSTM1-206ENST00000466342 ILVBLA1L0T0 632 aa12.11□□□□□ -0.47
SQSTM1-206ENST00000466342 WASH4PA8MWX3 477 aa12.11□□□□□ -0.47
SQSTM1-206ENST00000466342 EEF2KO00418 725 aaKnown RBP12.11□□□□□ -0.47
SQSTM1-206ENST00000466342 FGF10O15520 208 aaPredicted RBP12.11□□□□□ -0.47
SQSTM1-206ENST00000466342 KRT7P08729 469 aa12.11□□□□□ -0.47
SQSTM1-206ENST00000466342 SLC8A1P32418 973 aa12.11□□□□□ -0.47
SQSTM1-206ENST00000466342 GJC1P36383 396 aa12.11□□□□□ -0.47
SQSTM1-206ENST00000466342 HCAR3P49019 387 aa12.11□□□□□ -0.47
SQSTM1-206ENST00000466342 KIF5AQ12840 1032 aa12.11□□□□□ -0.47
SQSTM1-206ENST00000466342 CST6Q15828 149 aa12.11□□□□□ -0.47
SQSTM1-206ENST00000466342 LINC00303Q3SY05 128 aa12.11□□□□□ -0.47
SQSTM1-206ENST00000466342 PPP6R3Q5H9R7 873 aaPredicted RBP12.11□□□□□ -0.47
SQSTM1-206ENST00000466342 CDCP2Q5VXM1 449 aa12.11□□□□□ -0.47
SQSTM1-206ENST00000466342 C11orf63Q6NUN7 778 aa12.11□□□□□ -0.47
SQSTM1-206ENST00000466342 IGF2-ASQ6U949 168 aa12.11□□□□□ -0.47
SQSTM1-206ENST00000466342 POLNQ7Z5Q5 900 aa12.11□□□□□ -0.47
SQSTM1-206ENST00000466342 OXR1Q8N573 874 aa12.11□□□□□ -0.47
SQSTM1-206ENST00000466342 RTL3Q8N8U3 475 aaKnown RBP12.11□□□□□ -0.47
SQSTM1-206ENST00000466342 TPCN2Q8NHX9 752 aa12.11□□□□□ -0.47
SQSTM1-206ENST00000466342 FAM71BQ8TC56 605 aa12.11□□□□□ -0.47
SQSTM1-206ENST00000466342 PTPRN2Q92932 1015 aa12.11□□□□□ -0.47
SQSTM1-206ENST00000466342 DEPDC7Q96QD5 511 aa12.11□□□□□ -0.47
SQSTM1-206ENST00000466342 FEM1AQ9BSK4 669 aa12.11□□□□□ -0.47
SQSTM1-206ENST00000466342 MUC3BQ9H195 1237 aa12.11□□□□□ -0.47
SQSTM1-206ENST00000466342 AASDHPPTQ9NRN7 309 aa12.11□□□□□ -0.47
SQSTM1-206ENST00000466342 FBXL12Q9NXK8 326 aa12.11□□□□□ -0.47
SQSTM1-206ENST00000466342 FZD4Q9ULV1 537 aa12.11□□□□□ -0.47
SQSTM1-206ENST00000466342 OR51B4Q9Y5P0 310 aa12.11□□□□□ -0.47
SQSTM1-206ENST00000466342 DUSP10Q9Y6W6 482 aa12.11□□□□□ -0.47
SQSTM1-206ENST00000466342 SPTAN1Q13813 2472 aaKnown RBP12.11□□□□□ -0.47
SQSTM1-206ENST00000466342 KIF26BQ2KJY2 2108 aa12.1□□□□□ -0.47
SQSTM1-206ENST00000466342 A0A0U1RQJ8 604 aa12.1□□□□□ -0.47
SQSTM1-206ENST00000466342 FAM47DPA6NHR8 397 aa12.1□□□□□ -0.47
SQSTM1-206ENST00000466342 ENO4A6NNW6 628 aa12.1□□□□□ -0.47
SQSTM1-206ENST00000466342 H3BRJ5 948 aa12.1□□□□□ -0.47
SQSTM1-206ENST00000466342 TLR4O00206 839 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms