RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 IHHQ14623 411 aa11.79□□□□□ -0.52
CUX1-207ENST00000465461 CSRP2Q16527 193 aa11.79□□□□□ -0.52
CUX1-207ENST00000465461 TRIM61Q5EBN2 209 aa11.79□□□□□ -0.52
CUX1-207ENST00000465461 WDR45BQ5MNZ6 344 aa11.79□□□□□ -0.52
CUX1-207ENST00000465461 SEL1L3Q68CR1 1132 aa11.79□□□□□ -0.52
CUX1-207ENST00000465461 TIGD7Q6NT04 549 aaPredicted RBP11.79□□□□□ -0.52
CUX1-207ENST00000465461 PRR23CQ6ZRP0 262 aa11.79□□□□□ -0.52
CUX1-207ENST00000465461 TTC7BQ86TV6 843 aa11.79□□□□□ -0.52
CUX1-207ENST00000465461 ZC3H18Q86VM9 953 aaKnown RBP11.79□□□□□ -0.52
CUX1-207ENST00000465461 TEX26Q8N6G2 289 aa11.79□□□□□ -0.52
CUX1-207ENST00000465461 OR2I1PQ8NGU4 316 aa11.79□□□□□ -0.52
CUX1-207ENST00000465461 DNASE2BQ8WZ79 361 aa11.79□□□□□ -0.52
CUX1-207ENST00000465461 MAML1Q92585 1016 aa11.79□□□□□ -0.52
CUX1-207ENST00000465461 LRIG1Q96JA1 1093 aa11.79□□□□□ -0.52
CUX1-207ENST00000465461 SLC6A18Q96N87 628 aa11.79□□□□□ -0.52
CUX1-207ENST00000465461 OLFM3Q96PB7 478 aa11.79□□□□□ -0.52
CUX1-207ENST00000465461 MYOCQ99972 504 aa11.79□□□□□ -0.52
CUX1-207ENST00000465461 MGME1Q9BQP7 344 aa11.79□□□□□ -0.52
CUX1-207ENST00000465461 OSBPL1AQ9BXW6 950 aa11.79□□□□□ -0.52
CUX1-207ENST00000465461 CPEB1Q9BZB8 566 aaKnown RBP11.79□□□□□ -0.52
CUX1-207ENST00000465461 OSBPL8Q9BZF1 889 aa11.79□□□□□ -0.52
CUX1-207ENST00000465461 SCUBE2Q9NQ36 999 aa11.79□□□□□ -0.52
CUX1-207ENST00000465461 VPS45Q9NRW7 570 aa11.79□□□□□ -0.52
CUX1-207ENST00000465461 ZFR2Q9UPR6 939 aaKnown RBP11.79□□□□□ -0.52
CUX1-207ENST00000465461 CA5BQ9Y2D0 317 aa11.79□□□□□ -0.52
CUX1-207ENST00000465461 PCDHGC4Q9Y5F7 938 aa11.79□□□□□ -0.52
CUX1-207ENST00000465461 FADS3Q9Y5Q0 445 aa11.79□□□□□ -0.52
CUX1-207ENST00000465461 OTOGLQ3ZCN5 2332 aa11.78□□□□□ -0.52
CUX1-207ENST00000465461 PLXNA2O75051 1894 aa11.78□□□□□ -0.52
CUX1-207ENST00000465461 ADAMTS9Q9P2N4 1935 aa11.78□□□□□ -0.52
CUX1-207ENST00000465461 A8MX80 341 aa11.78□□□□□ -0.52
CUX1-207ENST00000465461 C10orf142B7Z368 130 aa11.78□□□□□ -0.52
CUX1-207ENST00000465461 KHNYNO15037 678 aaKnown RBP11.78□□□□□ -0.52
CUX1-207ENST00000465461 SLC31A1O15431 190 aa11.78□□□□□ -0.52
CUX1-207ENST00000465461 PRLRP16471 622 aa11.78□□□□□ -0.52
CUX1-207ENST00000465461 CR2P20023 1033 aa11.78□□□□□ -0.52
CUX1-207ENST00000465461 CSNK1DP48730 415 aa11.78□□□□□ -0.52
CUX1-207ENST00000465461 RENBPP51606 427 aa11.78□□□□□ -0.52
CUX1-207ENST00000465461 BCL2L1Q07817 233 aa11.78□□□□□ -0.52
CUX1-207ENST00000465461 NSUN2Q08J23 767 aaKnown RBP eCLIP11.78□□□□□ -0.52
CUX1-207ENST00000465461 NIPAL4Q0D2K0 466 aa11.78□□□□□ -0.52
CUX1-207ENST00000465461 TRAF2Q12933 501 aa11.78□□□□□ -0.52
CUX1-207ENST00000465461 HNRNPDQ14103 355 aaKnown RBP11.78□□□□□ -0.52
CUX1-207ENST00000465461 PDK1Q15118 436 aa11.78□□□□□ -0.52
CUX1-207ENST00000465461 PTPRRQ15256 657 aa11.78□□□□□ -0.52
CUX1-207ENST00000465461 PPP2R5EQ16537 467 aa11.78□□□□□ -0.52
CUX1-207ENST00000465461 PEAR1Q5VY43 1037 aaPredicted RBP11.78□□□□□ -0.52
CUX1-207ENST00000465461 BBS12Q6ZW61 710 aa11.78□□□□□ -0.52
CUX1-207ENST00000465461 LRRC49Q8IUZ0 686 aa11.78□□□□□ -0.52
CUX1-207ENST00000465461 BBS5Q8N3I7 341 aa11.78□□□□□ -0.52
CUX1-207ENST00000465461 UBL4BQ8N7F7 174 aa11.78□□□□□ -0.52
CUX1-207ENST00000465461 CNTD1Q8N815 330 aa11.78□□□□□ -0.52
CUX1-207ENST00000465461 C12orf50Q8NA57 414 aaPredicted RBP11.78□□□□□ -0.52
CUX1-207ENST00000465461 C1orf216Q8TAB5 229 aa11.78□□□□□ -0.52
CUX1-207ENST00000465461 PDCD6IPQ8WUM4 868 aaKnown RBP11.78□□□□□ -0.52
CUX1-207ENST00000465461 P3H4Q92791 437 aa11.78□□□□□ -0.52
CUX1-207ENST00000465461 HES6Q96HZ4 224 aa11.78□□□□□ -0.52
CUX1-207ENST00000465461 NUDCD1Q96RS6 583 aa11.78□□□□□ -0.52
CUX1-207ENST00000465461 SEMA3CQ99985 751 aa11.78□□□□□ -0.52
CUX1-207ENST00000465461 FZD3Q9NPG1 666 aa11.78□□□□□ -0.52
CUX1-207ENST00000465461 TRMT1Q9NXH9 659 aaKnown RBP11.78□□□□□ -0.52
CUX1-207ENST00000465461 ANKRD36A6QL64 1941 aa11.78□□□□□ -0.52
CUX1-207ENST00000465461 A0A0U1RQS6 177 aa11.77□□□□□ -0.53
CUX1-207ENST00000465461 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.77□□□□□ -0.53
CUX1-207ENST00000465461 A0A1W2PPC4 97 aa11.77□□□□□ -0.53
CUX1-207ENST00000465461 TCRBV7S2A1N4TA0A589 114 aa11.77□□□□□ -0.53
CUX1-207ENST00000465461 GOLGA8CPA6NN73 597 aa11.77□□□□□ -0.53
CUX1-207ENST00000465461 F5H423 210 aaPredicted RBP11.77□□□□□ -0.53
CUX1-207ENST00000465461 NEMP1O14524 444 aa11.77□□□□□ -0.53
CUX1-207ENST00000465461 TRAFD1O14545 582 aaPredicted RBP11.77□□□□□ -0.53
CUX1-207ENST00000465461 KCNK3O14649 394 aa11.77□□□□□ -0.53
CUX1-207ENST00000465461 PPP1R12AO14974 1030 aaPredicted RBP11.77□□□□□ -0.53
CUX1-207ENST00000465461 BCAT2O15382 392 aaPredicted RBP11.77□□□□□ -0.53
CUX1-207ENST00000465461 MMP20O60882 483 aa11.77□□□□□ -0.53
CUX1-207ENST00000465461 NEBLO76041 1014 aa11.77□□□□□ -0.53
CUX1-207ENST00000465461 WNT1P04628 370 aa11.77□□□□□ -0.53
CUX1-207ENST00000465461 TGM2P21980 687 aa11.77□□□□□ -0.53
CUX1-207ENST00000465461 CD27P26842 260 aa11.77□□□□□ -0.53
CUX1-207ENST00000465461 SERPINA4P29622 427 aa11.77□□□□□ -0.53
CUX1-207ENST00000465461 CSNK1EP49674 416 aaKnown RBP11.77□□□□□ -0.53
CUX1-207ENST00000465461 CCR5P51681 352 aa11.77□□□□□ -0.53
CUX1-207ENST00000465461 COPS2P61201 443 aa11.77□□□□□ -0.53
CUX1-207ENST00000465461 FGL2Q14314 439 aa11.77□□□□□ -0.53
CUX1-207ENST00000465461 DUOXA1Q1HG43 343 aa11.77□□□□□ -0.53
CUX1-207ENST00000465461 ZNF284Q2VY69 593 aa11.77□□□□□ -0.53
CUX1-207ENST00000465461 AASDHQ4L235 1098 aaPredicted RBP11.77□□□□□ -0.53
CUX1-207ENST00000465461 CFAP58Q5T655 872 aa11.77□□□□□ -0.53
CUX1-207ENST00000465461 MEI1Q5TIA1 1274 aa11.77□□□□□ -0.53
CUX1-207ENST00000465461 CCDC181Q5TID7 509 aa11.77□□□□□ -0.53
CUX1-207ENST00000465461 KDM7AQ6ZMT4 941 aa11.77□□□□□ -0.53
CUX1-207ENST00000465461 ZNF662Q6ZS27 426 aa11.77□□□□□ -0.53
CUX1-207ENST00000465461 REXO1L1PQ8IX06 675 aa11.77□□□□□ -0.53
CUX1-207ENST00000465461 PAF1Q8N7H5 531 aa11.77□□□□□ -0.53
CUX1-207ENST00000465461 ARRDC2Q8TBH0 407 aa11.77□□□□□ -0.53
CUX1-207ENST00000465461 AGAP3Q96P47 875 aa11.77□□□□□ -0.53
CUX1-207ENST00000465461 SMIM14Q96QK8 99 aa11.77□□□□□ -0.53
CUX1-207ENST00000465461 TUBGCP5Q96RT8 1024 aa11.77□□□□□ -0.53
CUX1-207ENST00000465461 WRAP53Q9BUR4 548 aaKnown RBP11.77□□□□□ -0.53
CUX1-207ENST00000465461 GTPBP2Q9BX10 602 aaKnown RBP11.77□□□□□ -0.53
CUX1-207ENST00000465461 PCED1AQ9H1Q7 454 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms