RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 NR1I3Q14994 352 aa14.12□□□□□ -0.15
USP4-206ENST00000461553 CA9Q16790 459 aa14.12□□□□□ -0.15
USP4-206ENST00000461553 PROX2Q3B8N5 592 aa14.12□□□□□ -0.15
USP4-206ENST00000461553 HES3Q5TGS1 186 aa14.12□□□□□ -0.15
USP4-206ENST00000461553 RFX8Q6ZV50 586 aa14.12□□□□□ -0.15
USP4-206ENST00000461553 TTC7BQ86TV6 843 aa14.12□□□□□ -0.15
USP4-206ENST00000461553 LUZP1Q86V48 1076 aa14.12□□□□□ -0.15
USP4-206ENST00000461553 MARCH9Q86YJ5 346 aa14.12□□□□□ -0.15
USP4-206ENST00000461553 PSTKQ8IV42 348 aaKnown RBP14.12□□□□□ -0.15
USP4-206ENST00000461553 PDCD7Q8N8D1 485 aaKnown RBP14.12□□□□□ -0.15
USP4-206ENST00000461553 NETO2Q8NC67 525 aa14.12□□□□□ -0.15
USP4-206ENST00000461553 ASB12Q8WXK4 309 aa14.12□□□□□ -0.15
USP4-206ENST00000461553 TSC1Q92574 1164 aa14.12□□□□□ -0.15
USP4-206ENST00000461553 NXPE2Q96DL1 559 aa14.12□□□□□ -0.15
USP4-206ENST00000461553 BMFQ96LC9 184 aa14.12□□□□□ -0.15
USP4-206ENST00000461553 LENG8Q96PV6 779 aaPredicted RBP14.12□□□□□ -0.15
USP4-206ENST00000461553 KCTD15Q96SI1 283 aaPredicted RBP14.12□□□□□ -0.15
USP4-206ENST00000461553 C1QTNF2Q9BXJ5 285 aa14.12□□□□□ -0.15
USP4-206ENST00000461553 ZWILCHQ9H900 591 aa14.12□□□□□ -0.15
USP4-206ENST00000461553 PDFQ9HBH1 243 aa14.12□□□□□ -0.15
USP4-206ENST00000461553 CBX8Q9HC52 389 aa14.12□□□□□ -0.15
USP4-206ENST00000461553 EVA1BQ9NVM1 165 aa14.12□□□□□ -0.15
USP4-206ENST00000461553 UCKL1Q9NWZ5 548 aa14.12□□□□□ -0.15
USP4-206ENST00000461553 MYO1AQ9UBC5 1043 aa14.12□□□□□ -0.15
USP4-206ENST00000461553 DKK3Q9UBP4 350 aa14.12□□□□□ -0.15
USP4-206ENST00000461553 IPO11Q9UI26 975 aaKnown RBP14.12□□□□□ -0.15
USP4-206ENST00000461553 MFHAS1Q9Y4C4 1052 aa14.12□□□□□ -0.15
USP4-206ENST00000461553 SPTY2D1-AS1A0A0U1RR47 76 aa14.11□□□□□ -0.15
USP4-206ENST00000461553 A0A1W2PQJ5 194 aa14.11□□□□□ -0.15
USP4-206ENST00000461553 NEMP2A6NFY4 417 aa14.11□□□□□ -0.15
USP4-206ENST00000461553 TRIM38O00635 465 aa14.11□□□□□ -0.15
USP4-206ENST00000461553 AREL1O15033 823 aa14.11□□□□□ -0.15
USP4-206ENST00000461553 PRAMEF11O60813 436 aa14.11□□□□□ -0.15
USP4-206ENST00000461553 LRCH4O75427 683 aa14.11□□□□□ -0.15
USP4-206ENST00000461553 TM7SF2O76062 418 aa14.11□□□□□ -0.15
USP4-206ENST00000461553 CAPNS1P04632 268 aa14.11□□□□□ -0.15
USP4-206ENST00000461553 SKILP12757 684 aa14.11□□□□□ -0.15
USP4-206ENST00000461553 JUPP14923 745 aa14.11□□□□□ -0.15
USP4-206ENST00000461553 NME1P15531 152 aaKnown RBP14.11□□□□□ -0.15
USP4-206ENST00000461553 ACP1P24666 158 aa14.11□□□□□ -0.15
USP4-206ENST00000461553 SUOXP51687 545 aa14.11□□□□□ -0.15
USP4-206ENST00000461553 THOP1P52888 689 aa14.11□□□□□ -0.15
USP4-206ENST00000461553 RP1P56715 2156 aa14.11□□□□□ -0.15
USP4-206ENST00000461553 FZD2Q14332 565 aa14.11□□□□□ -0.15
USP4-206ENST00000461553 ZNF548Q8NEK5 533 aaPredicted RBP14.11□□□□□ -0.15
USP4-206ENST00000461553 IQCDQ96DY2 449 aa14.11□□□□□ -0.15
USP4-206ENST00000461553 KLF6Q99612 283 aaPredicted RBP14.11□□□□□ -0.15
USP4-206ENST00000461553 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.11□□□□□ -0.15
USP4-206ENST00000461553 DUSP23Q9BVJ7 150 aa14.11□□□□□ -0.15
USP4-206ENST00000461553 CINPQ9BW66 212 aaPredicted RBP14.11□□□□□ -0.15
USP4-206ENST00000461553 CPEB1Q9BZB8 566 aaKnown RBP14.11□□□□□ -0.15
USP4-206ENST00000461553 TRIM7Q9C029 511 aa14.11□□□□□ -0.15
USP4-206ENST00000461553 NLGN3Q9NZ94 848 aa14.11□□□□□ -0.15
USP4-206ENST00000461553 DKK4Q9UBT3 224 aa14.11□□□□□ -0.15
USP4-206ENST00000461553 BZW2Q9Y6E2 419 aaKnown RBP14.11□□□□□ -0.15
USP4-206ENST00000461553 CACNA1GO43497 2377 aa14.1□□□□□ -0.15
USP4-206ENST00000461553 ASXL3Q9C0F0 2248 aa14.1□□□□□ -0.15
USP4-206ENST00000461553 TRABD2BA6NFA1 517 aa14.1□□□□□ -0.15
USP4-206ENST00000461553 H3BRJ5 948 aa14.1□□□□□ -0.15
USP4-206ENST00000461553 J3KR12 359 aa14.1□□□□□ -0.15
USP4-206ENST00000461553 TAF4O00268 1085 aa14.1□□□□□ -0.15
USP4-206ENST00000461553 DFFAO00273 331 aa14.1□□□□□ -0.15
USP4-206ENST00000461553 INSIG1O15503 277 aa14.1□□□□□ -0.15
USP4-206ENST00000461553 ERCC2P18074 760 aa14.1□□□□□ -0.15
USP4-206ENST00000461553 PTMSP20962 102 aa14.1□□□□□ -0.15
USP4-206ENST00000461553 IGFALSP35858 605 aa14.1□□□□□ -0.15
USP4-206ENST00000461553 ARL4AP40617 200 aa14.1□□□□□ -0.15
USP4-206ENST00000461553 PAPOLAP51003 745 aaKnown RBP14.1□□□□□ -0.15
USP4-206ENST00000461553 CLDN6P56747 220 aa14.1□□□□□ -0.15
USP4-206ENST00000461553 UBASH3AP57075 661 aa14.1□□□□□ -0.15
USP4-206ENST00000461553 CAMK2BQ13554 666 aa14.1□□□□□ -0.15
USP4-206ENST00000461553 PTK2BQ14289 1009 aa14.1□□□□□ -0.15
USP4-206ENST00000461553 CYTH1Q15438 398 aa14.1□□□□□ -0.15
USP4-206ENST00000461553 ZNF542PQ5EBM4 170 aa14.1□□□□□ -0.15
USP4-206ENST00000461553 ERAP2Q6P179 960 aa14.1□□□□□ -0.15
USP4-206ENST00000461553 CYP4V2Q6ZWL3 525 aaPredicted RBP14.1□□□□□ -0.15
USP4-206ENST00000461553 SLC25A45Q8N413 288 aa14.1□□□□□ -0.15
USP4-206ENST00000461553 ARFGAP1Q8N6T3 406 aa14.1□□□□□ -0.15
USP4-206ENST00000461553 PAF1Q8N7H5 531 aa14.1□□□□□ -0.15
USP4-206ENST00000461553 VOPP1Q96AW1 172 aa14.1□□□□□ -0.15
USP4-206ENST00000461553 TUBGCP5Q96RT8 1024 aa14.1□□□□□ -0.15
USP4-206ENST00000461553 WRAP53Q9BUR4 548 aaKnown RBP14.1□□□□□ -0.15
USP4-206ENST00000461553 SLC39A8Q9C0K1 460 aa14.1□□□□□ -0.15
USP4-206ENST00000461553 ISCUQ9H1K1 167 aa14.1□□□□□ -0.15
USP4-206ENST00000461553 ITPR1Q14643 2758 aa14.1□□□□□ -0.15
USP4-206ENST00000461553 TSPAN11A1L157 253 aa14.09□□□□□ -0.15
USP4-206ENST00000461553 MMP20O60882 483 aa14.09□□□□□ -0.15
USP4-206ENST00000461553 PALMO75781 387 aa14.09□□□□□ -0.15
USP4-206ENST00000461553 CSF2P04141 144 aa14.09□□□□□ -0.15
USP4-206ENST00000461553 JUNDP17535 347 aa14.09□□□□□ -0.15
USP4-206ENST00000461553 SERPINA4P29622 427 aa14.09□□□□□ -0.15
USP4-206ENST00000461553 PCK1P35558 622 aa14.09□□□□□ -0.15
USP4-206ENST00000461553 PFN3P60673 137 aa14.09□□□□□ -0.15
USP4-206ENST00000461553 CYP4F3Q08477 520 aa14.09□□□□□ -0.15
USP4-206ENST00000461553 DPYSQ14117 519 aa14.09□□□□□ -0.15
USP4-206ENST00000461553 ACAP1Q15027 740 aa14.09□□□□□ -0.15
USP4-206ENST00000461553 SMTNL2Q2TAL5 461 aa14.09□□□□□ -0.15
USP4-206ENST00000461553 BRAT1Q6PJG6 821 aa14.09□□□□□ -0.15
USP4-206ENST00000461553 ARHGAP12Q8IWW6 846 aa14.09□□□□□ -0.15
USP4-206ENST00000461553 NPWQ8N729 165 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms