RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 ATP13A3Q9H7F0 1226 aa18.9■□□□□ 0.62
USP39-209ENST00000458268 RCOR3Q9P2K3 495 aaPredicted RBP18.9■□□□□ 0.62
USP39-209ENST00000458268 TTLL3Q9Y4R7 772 aa18.9■□□□□ 0.62
USP39-209ENST00000458268 A0A1W2PR77 199 aa18.89■□□□□ 0.61
USP39-209ENST00000458268 TLR4O00206 839 aa18.89■□□□□ 0.61
USP39-209ENST00000458268 MUSKO15146 869 aa18.89■□□□□ 0.61
USP39-209ENST00000458268 MMP20O60882 483 aa18.89■□□□□ 0.61
USP39-209ENST00000458268 PAK4O96013 591 aaPredicted RBP18.89■□□□□ 0.61
USP39-209ENST00000458268 CSRP1P21291 193 aaKnown RBP18.89■□□□□ 0.61
USP39-209ENST00000458268 HNRNPA2B1P22626 353 aaKnown RBP18.89■□□□□ 0.61
USP39-209ENST00000458268 KDELR1P24390 212 aa18.89■□□□□ 0.61
USP39-209ENST00000458268 IL4RP24394 825 aa18.89■□□□□ 0.61
USP39-209ENST00000458268 SERPINA4P29622 427 aa18.89■□□□□ 0.61
USP39-209ENST00000458268 ARHGAP25P42331 645 aa18.89■□□□□ 0.61
USP39-209ENST00000458268 CCT8P50990 548 aa18.89■□□□□ 0.61
USP39-209ENST00000458268 ARSEP51690 589 aa18.89■□□□□ 0.61
USP39-209ENST00000458268 MAXP61244 160 aa18.89■□□□□ 0.61
USP39-209ENST00000458268 RPS21P63220 83 aaKnown RBP18.89■□□□□ 0.61
USP39-209ENST00000458268 SIM1P81133 766 aaPredicted RBP18.89■□□□□ 0.61
USP39-209ENST00000458268 BCL2L1Q07817 233 aa18.89■□□□□ 0.61
USP39-209ENST00000458268 KIAA1161Q6NSJ0 714 aa18.89■□□□□ 0.61
USP39-209ENST00000458268 NEK5Q6P3R8 708 aa18.89■□□□□ 0.61
USP39-209ENST00000458268 GATAD2AQ86YP4 633 aa18.89■□□□□ 0.61
USP39-209ENST00000458268 RFX6Q8HWS3 928 aa18.89■□□□□ 0.61
USP39-209ENST00000458268 CCDC170Q8IYT3 715 aa18.89■□□□□ 0.61
USP39-209ENST00000458268 BBS5Q8N3I7 341 aa18.89■□□□□ 0.61
USP39-209ENST00000458268 RAB7BQ96AH8 199 aa18.89■□□□□ 0.61
USP39-209ENST00000458268 RNF25Q96BH1 459 aaPredicted RBP18.89■□□□□ 0.61
USP39-209ENST00000458268 KLHDC7BQ96G42 594 aa18.89■□□□□ 0.61
USP39-209ENST00000458268 SLC17A9Q9BYT1 436 aa18.89■□□□□ 0.61
USP39-209ENST00000458268 SUV39H2Q9H5I1 410 aa18.89■□□□□ 0.61
USP39-209ENST00000458268 NT5MQ9NPB1 228 aa18.89■□□□□ 0.61
USP39-209ENST00000458268 SCUBE2Q9NQ36 999 aa18.89■□□□□ 0.61
USP39-209ENST00000458268 INTUQ9ULD6 942 aa18.89■□□□□ 0.61
USP39-209ENST00000458268 TDRD6O60522 2096 aaKnown RBP18.89■□□□□ 0.61
USP39-209ENST00000458268 GOLGA8CPA6NN73 597 aa18.88■□□□□ 0.61
USP39-209ENST00000458268 TSPAN6O43657 245 aa18.88■□□□□ 0.61
USP39-209ENST00000458268 BUB1BO60566 1050 aaPredicted RBP18.88■□□□□ 0.61
USP39-209ENST00000458268 THEGLP0DJG4 465 aa18.88■□□□□ 0.61
USP39-209ENST00000458268 TIMP2P16035 220 aa18.88■□□□□ 0.61
USP39-209ENST00000458268 COMTP21964 271 aa18.88■□□□□ 0.61
USP39-209ENST00000458268 NUDT1P36639 197 aa18.88■□□□□ 0.61
USP39-209ENST00000458268 MMP13P45452 471 aa18.88■□□□□ 0.61
USP39-209ENST00000458268 RENBPP51606 427 aa18.88■□□□□ 0.61
USP39-209ENST00000458268 DYNLT1P63172 113 aa18.88■□□□□ 0.61
USP39-209ENST00000458268 FOXC1Q12948 553 aa18.88■□□□□ 0.61
USP39-209ENST00000458268 RFTN1Q14699 578 aaPredicted RBP18.88■□□□□ 0.61
USP39-209ENST00000458268 LLGL1Q15334 1064 aa18.88■□□□□ 0.61
USP39-209ENST00000458268 CCDC157Q569K6 752 aa18.88■□□□□ 0.61
USP39-209ENST00000458268 TMTC1Q8IUR5 882 aa18.88■□□□□ 0.61
USP39-209ENST00000458268 CCNYQ8ND76 341 aa18.88■□□□□ 0.61
USP39-209ENST00000458268 MAK16Q9BXY0 300 aaKnown RBP18.88■□□□□ 0.61
USP39-209ENST00000458268 CPEB1Q9BZB8 566 aaKnown RBP18.88■□□□□ 0.61
USP39-209ENST00000458268 COQ6Q9Y2Z9 468 aa18.88■□□□□ 0.61
USP39-209ENST00000458268 HEY1Q9Y5J3 304 aa18.88■□□□□ 0.61
USP39-209ENST00000458268 EPN1Q9Y6I3 576 aaPredicted RBP18.88■□□□□ 0.61
USP39-209ENST00000458268 DNAH14Q0VDD8 3507 aa18.88■□□□□ 0.61
USP39-209ENST00000458268 UPK3BL1B0FP48 263 aa18.87■□□□□ 0.61
USP39-209ENST00000458268 UPK3BL2E5RIL1 263 aa18.87■□□□□ 0.61
USP39-209ENST00000458268 AP1G1O43747 822 aa18.87■□□□□ 0.61
USP39-209ENST00000458268 MAFKO60675 156 aa18.87■□□□□ 0.61
USP39-209ENST00000458268 MTA2O94776 668 aa18.87■□□□□ 0.61
USP39-209ENST00000458268 NDUFA10O95299 355 aa18.87■□□□□ 0.61
USP39-209ENST00000458268 CEACAM1P13688 526 aa18.87■□□□□ 0.61
USP39-209ENST00000458268 NXPH1P58417 271 aa18.87■□□□□ 0.61
USP39-209ENST00000458268 FAM193AP78312 1265 aa18.87■□□□□ 0.61
USP39-209ENST00000458268 FOXK2Q01167 660 aa18.87■□□□□ 0.61
USP39-209ENST00000458268 GBE1Q04446 702 aa18.87■□□□□ 0.61
USP39-209ENST00000458268 SLC14A1Q13336 389 aa18.87■□□□□ 0.61
USP39-209ENST00000458268 GRM3Q14832 879 aa18.87■□□□□ 0.61
USP39-209ENST00000458268 LRRK1Q38SD2 2015 aa18.87■□□□□ 0.61
USP39-209ENST00000458268 TMEM259Q4ZIN3 620 aa18.87■□□□□ 0.61
USP39-209ENST00000458268 MARC1Q5VT66 337 aa18.87■□□□□ 0.61
USP39-209ENST00000458268 KDM7AQ6ZMT4 941 aa18.87■□□□□ 0.61
USP39-209ENST00000458268 PIP4P1Q86T03 277 aa18.87■□□□□ 0.61
USP39-209ENST00000458268 RHOT1Q8IXI2 618 aa18.87■□□□□ 0.61
USP39-209ENST00000458268 MFSD2AQ8NA29 543 aa18.87■□□□□ 0.61
USP39-209ENST00000458268 ACRBPQ8NEB7 543 aa18.87■□□□□ 0.61
USP39-209ENST00000458268 OR13H1Q8NG92 308 aa18.87■□□□□ 0.61
USP39-209ENST00000458268 FAM71BQ8TC56 605 aa18.87■□□□□ 0.61
USP39-209ENST00000458268 RHBDD1Q8TEB9 315 aa18.87■□□□□ 0.61
USP39-209ENST00000458268 ZNF830Q96NB3 372 aaPredicted RBP18.87■□□□□ 0.61
USP39-209ENST00000458268 ZNF599Q96NL3 588 aa18.87■□□□□ 0.61
USP39-209ENST00000458268 ELF4Q99607 663 aaPredicted RBP18.87■□□□□ 0.61
USP39-209ENST00000458268 A8MX80 341 aa18.86■□□□□ 0.61
USP39-209ENST00000458268 GOLGA6L6A8MZA4 724 aa18.86■□□□□ 0.61
USP39-209ENST00000458268 RAD51BO15315 384 aa18.86■□□□□ 0.61
USP39-209ENST00000458268 SPINT1O43278 529 aa18.86■□□□□ 0.61
USP39-209ENST00000458268 MAGEC1O60732 1142 aa18.86■□□□□ 0.61
USP39-209ENST00000458268 SDC3O75056 442 aa18.86■□□□□ 0.61
USP39-209ENST00000458268 ITGAVP06756 1048 aa18.86■□□□□ 0.61
USP39-209ENST00000458268 FGL2Q14314 439 aa18.86■□□□□ 0.61
USP39-209ENST00000458268 SUZ12Q15022 739 aaKnown RBP18.86■□□□□ 0.61
USP39-209ENST00000458268 PAFAH1B3Q15102 231 aaKnown RBP18.86■□□□□ 0.61
USP39-209ENST00000458268 ZNF423Q2M1K9 1284 aa18.86■□□□□ 0.61
USP39-209ENST00000458268 ERAP2Q6P179 960 aa18.86■□□□□ 0.61
USP39-209ENST00000458268 RAD9BQ6WBX8 426 aa18.86■□□□□ 0.61
USP39-209ENST00000458268 GCNT7Q6ZNI0 430 aa18.86■□□□□ 0.61
USP39-209ENST00000458268 KIAA1328Q86T90 577 aa18.86■□□□□ 0.61
USP39-209ENST00000458268 SPATS2Q86XZ4 545 aaKnown RBP18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms