RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 HTRA2O43464 458 aaPredicted RBP11.7□□□□□ -0.54
SCN9A-204ENST00000452182 GJB3O75712 270 aa11.7□□□□□ -0.54
SCN9A-204ENST00000452182 APBB3O95704 486 aa11.7□□□□□ -0.54
SCN9A-204ENST00000452182 IL1BP01584 269 aa11.7□□□□□ -0.54
SCN9A-204ENST00000452182 CTAGE8P0CG41 777 aa11.7□□□□□ -0.54
SCN9A-204ENST00000452182 GABRG2P18507 467 aa11.7□□□□□ -0.54
SCN9A-204ENST00000452182 NDUFV2P19404 249 aa11.7□□□□□ -0.54
SCN9A-204ENST00000452182 C5AR1P21730 350 aa11.7□□□□□ -0.54
SCN9A-204ENST00000452182 CA4P22748 312 aa11.7□□□□□ -0.54
SCN9A-204ENST00000452182 AVPR2P30518 371 aa11.7□□□□□ -0.54
SCN9A-204ENST00000452182 RPL22P35268 128 aaKnown RBP11.7□□□□□ -0.54
SCN9A-204ENST00000452182 FDFT1P37268 417 aa11.7□□□□□ -0.54
SCN9A-204ENST00000452182 CD86P42081 329 aa11.7□□□□□ -0.54
SCN9A-204ENST00000452182 SKOR1P84550 965 aa11.7□□□□□ -0.54
SCN9A-204ENST00000452182 DR1Q01658 176 aa11.7□□□□□ -0.54
SCN9A-204ENST00000452182 C2orf54Q08AI8 447 aa11.7□□□□□ -0.54
SCN9A-204ENST00000452182 MPP3Q13368 585 aa11.7□□□□□ -0.54
SCN9A-204ENST00000452182 PRPSAP1Q14558 356 aa11.7□□□□□ -0.54
SCN9A-204ENST00000452182 IHHQ14623 411 aa11.7□□□□□ -0.54
SCN9A-204ENST00000452182 CST6Q15828 149 aa11.7□□□□□ -0.54
SCN9A-204ENST00000452182 GDPD4Q6W3E5 623 aa11.7□□□□□ -0.54
SCN9A-204ENST00000452182 MAATS1Q7Z4T9 603 aa11.7□□□□□ -0.54
SCN9A-204ENST00000452182 CTAGE6Q86UF2 777 aa11.7□□□□□ -0.54
SCN9A-204ENST00000452182 MMAAQ8IVH4 418 aaKnown RBP11.7□□□□□ -0.54
SCN9A-204ENST00000452182 C1orf210Q8IVY1 113 aa11.7□□□□□ -0.54
SCN9A-204ENST00000452182 CTAGE4Q8IX94 777 aa11.7□□□□□ -0.54
SCN9A-204ENST00000452182 GRIN3AQ8TCU5 1115 aa11.7□□□□□ -0.54
SCN9A-204ENST00000452182 PRCCQ92733 491 aaPredicted RBP11.7□□□□□ -0.54
SCN9A-204ENST00000452182 ECHDC3Q96DC8 303 aa11.7□□□□□ -0.54
SCN9A-204ENST00000452182 PPP1R16AQ96I34 528 aa11.7□□□□□ -0.54
SCN9A-204ENST00000452182 NSMCE3Q96MG7 304 aa11.7□□□□□ -0.54
SCN9A-204ENST00000452182 KRT12Q99456 494 aa11.7□□□□□ -0.54
SCN9A-204ENST00000452182 GORASP1Q9BQQ3 440 aa11.7□□□□□ -0.54
SCN9A-204ENST00000452182 C1QTNF1Q9BXJ1 281 aa11.7□□□□□ -0.54
SCN9A-204ENST00000452182 SUV39H2Q9H5I1 410 aa11.7□□□□□ -0.54
SCN9A-204ENST00000452182 POLR3BQ9NW08 1133 aaPredicted RBP11.7□□□□□ -0.54
SCN9A-204ENST00000452182 SPATA6Q9NWH7 488 aaPredicted RBP11.7□□□□□ -0.54
SCN9A-204ENST00000452182 FAM153AQ9UHL3 310 aa11.7□□□□□ -0.54
SCN9A-204ENST00000452182 SARDHQ9UL12 918 aa11.7□□□□□ -0.54
SCN9A-204ENST00000452182 PCDHGA4Q9Y5G9 962 aa11.7□□□□□ -0.54
SCN9A-204ENST00000452182 CCDC163A0A0D9SF12 145 aa11.69□□□□□ -0.54
SCN9A-204ENST00000452182 TTC24A2A3L6 582 aaPredicted RBP11.69□□□□□ -0.54
SCN9A-204ENST00000452182 GOLGA6CA6NDK9 693 aa11.69□□□□□ -0.54
SCN9A-204ENST00000452182 GOLGA6BA6NDN3 693 aa11.69□□□□□ -0.54
SCN9A-204ENST00000452182 ERI2A8K979 691 aaKnown RBP11.69□□□□□ -0.54
SCN9A-204ENST00000452182 K7ESF4 209 aa11.69□□□□□ -0.54
SCN9A-204ENST00000452182 FZD6O60353 706 aa11.69□□□□□ -0.54
SCN9A-204ENST00000452182 PIGNO95427 931 aa11.69□□□□□ -0.54
SCN9A-204ENST00000452182 METTL18O95568 372 aa11.69□□□□□ -0.54
SCN9A-204ENST00000452182 MT-CYBP00156 380 aaPredicted RBP11.69□□□□□ -0.54
SCN9A-204ENST00000452182 EPOP01588 193 aa11.69□□□□□ -0.54
SCN9A-204ENST00000452182 KRT14P02533 472 aa11.69□□□□□ -0.54
SCN9A-204ENST00000452182 ZSCAN5DPP0CG00 497 aa11.69□□□□□ -0.54
SCN9A-204ENST00000452182 GOLGA6DP0CG33 693 aa11.69□□□□□ -0.54
SCN9A-204ENST00000452182 ETS1P14921 441 aa11.69□□□□□ -0.54
SCN9A-204ENST00000452182 ITGB7P26010 798 aa11.69□□□□□ -0.54
SCN9A-204ENST00000452182 PSMB4P28070 264 aa11.69□□□□□ -0.54
SCN9A-204ENST00000452182 GKP32189 559 aa11.69□□□□□ -0.54
SCN9A-204ENST00000452182 SLC8A1P32418 973 aa11.69□□□□□ -0.54
SCN9A-204ENST00000452182 GEMP55040 296 aa11.69□□□□□ -0.54
SCN9A-204ENST00000452182 SFSWAPQ12872 951 aaKnown RBP11.69□□□□□ -0.54
SCN9A-204ENST00000452182 PTK6Q13882 451 aa11.69□□□□□ -0.54
SCN9A-204ENST00000452182 ZNF805Q5CZA5 627 aa11.69□□□□□ -0.54
SCN9A-204ENST00000452182 FAM182AQ5T1J6 154 aa11.69□□□□□ -0.54
SCN9A-204ENST00000452182 BRAT1Q6PJG6 821 aa11.69□□□□□ -0.54
SCN9A-204ENST00000452182 CAMK1DQ8IU85 385 aa11.69□□□□□ -0.54
SCN9A-204ENST00000452182 MMGT1Q8N4V1 131 aa11.69□□□□□ -0.54
SCN9A-204ENST00000452182 DTWD2Q8NBA8 298 aa11.69□□□□□ -0.54
SCN9A-204ENST00000452182 MDGA1Q8NFP4 955 aa11.69□□□□□ -0.54
SCN9A-204ENST00000452182 SPATA22Q8NHS9 363 aa11.69□□□□□ -0.54
SCN9A-204ENST00000452182 FAM131CQ96AQ9 280 aa11.69□□□□□ -0.54
SCN9A-204ENST00000452182 SIPA1Q96FS4 1042 aa11.69□□□□□ -0.54
SCN9A-204ENST00000452182 OXNAD1Q96HP4 312 aaPredicted RBP11.69□□□□□ -0.54
SCN9A-204ENST00000452182 RBM15Q96T37 977 aaKnown RBP eCLIP11.69□□□□□ -0.54
SCN9A-204ENST00000452182 TDRD1Q9BXT4 1180 aaKnown RBP11.69□□□□□ -0.54
SCN9A-204ENST00000452182 GOLGA6AQ9NYA3 693 aa11.69□□□□□ -0.54
SCN9A-204ENST00000452182 PCDHGC4Q9Y5F7 938 aa11.69□□□□□ -0.54
SCN9A-204ENST00000452182 FAM187AA6NFU0 413 aa11.68□□□□□ -0.54
SCN9A-204ENST00000452182 KPNA3O00505 521 aaPredicted RBP11.68□□□□□ -0.54
SCN9A-204ENST00000452182 PSMD3O43242 534 aa11.68□□□□□ -0.54
SCN9A-204ENST00000452182 LAMTOR5O43504 91 aa11.68□□□□□ -0.54
SCN9A-204ENST00000452182 IGLV3-19P01714 112 aa11.68□□□□□ -0.54
SCN9A-204ENST00000452182 DNTTP04053 509 aa11.68□□□□□ -0.54
SCN9A-204ENST00000452182 UGT2B4P06133 528 aa11.68□□□□□ -0.54
SCN9A-204ENST00000452182 RPL26P61254 145 aaKnown RBP11.68□□□□□ -0.54
SCN9A-204ENST00000452182 POLR2LP62875 67 aaKnown RBP11.68□□□□□ -0.54
SCN9A-204ENST00000452182 CCDC15Q0P6D6 951 aa11.68□□□□□ -0.54
SCN9A-204ENST00000452182 TRAF2Q12933 501 aa11.68□□□□□ -0.54
SCN9A-204ENST00000452182 SEMA5AQ13591 1074 aa11.68□□□□□ -0.54
SCN9A-204ENST00000452182 PPP1R7Q15435 360 aa11.68□□□□□ -0.54
SCN9A-204ENST00000452182 TTC31Q49AM3 519 aaPredicted RBP11.68□□□□□ -0.54
SCN9A-204ENST00000452182 KCTD11Q693B1 232 aa11.68□□□□□ -0.54
SCN9A-204ENST00000452182 KDELC1Q6UW63 502 aa11.68□□□□□ -0.54
SCN9A-204ENST00000452182 USP30Q70CQ3 517 aa11.68□□□□□ -0.54
SCN9A-204ENST00000452182 PRUNE1Q86TP1 453 aa11.68□□□□□ -0.54
SCN9A-204ENST00000452182 KBTBD6Q86V97 674 aa11.68□□□□□ -0.54
SCN9A-204ENST00000452182 JAMLQ86YT9 394 aa11.68□□□□□ -0.54
SCN9A-204ENST00000452182 HMGB4Q8WW32 186 aa11.68□□□□□ -0.54
SCN9A-204ENST00000452182 KLHL32Q96NJ5 620 aa11.68□□□□□ -0.54
SCN9A-204ENST00000452182 HHIPQ96QV1 700 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms