RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 MT-CO3P00414 261 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 UGT2B4P06133 528 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 ALPIP09923 528 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 JUNDP17535 347 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 CHRNB2P17787 502 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 TNFAIP3P21580 790 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 ACVRL1P37023 503 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 NDST2P52849 883 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 COPB1P53618 953 aaKnown RBP7.17□□□□□ -1.26
VPS41-208ENST00000448833 HDAC4P56524 1084 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 CLDN2P57739 230 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 ERVPABLB-1P60509 514 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 RHOAP61586 193 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 SERINC3Q13530 473 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 PDE1CQ14123 709 aaPredicted RBP7.17□□□□□ -1.26
VPS41-208ENST00000448833 ELOCQ15369 112 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 TMCO4Q5TGY1 634 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 SEL1L3Q68CR1 1132 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 ACAD10Q6JQN1 1059 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 TRNP1Q6NT89 227 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 ESRP1Q6NXG1 681 aaKnown RBP7.17□□□□□ -1.26
VPS41-208ENST00000448833 ERAP2Q6P179 960 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 BRAT1Q6PJG6 821 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 LVRNQ6Q4G3 990 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 GCNT7Q6ZNI0 430 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 PARS2Q7L3T8 475 aaKnown RBP7.17□□□□□ -1.26
VPS41-208ENST00000448833 DNAAF5Q86Y56 855 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 PSTKQ8IV42 348 aaKnown RBP7.17□□□□□ -1.26
VPS41-208ENST00000448833 UMODL1-AS1Q8N2C9 162 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 FSTL5Q8N475 847 aaPredicted RBP7.17□□□□□ -1.26
VPS41-208ENST00000448833 ZNF248Q8NDW4 579 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 OR6C4Q8NGE1 309 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 JOSD2Q8TAC2 188 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 SNIP1Q8TAD8 396 aaKnown RBP7.17□□□□□ -1.26
VPS41-208ENST00000448833 CXorf40AQ8TE69 158 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 NAT6Q93015 286 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 CCDC97Q96F63 343 aaPredicted RBP7.17□□□□□ -1.26
VPS41-208ENST00000448833 APOLD1Q96LR9 279 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 KLHL32Q96NJ5 620 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 TUBGCP5Q96RT8 1024 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 MYOCQ99972 504 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 TM6SF2Q9BZW4 377 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 FZD3Q9NPG1 666 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 TMPRSS4Q9NRS4 437 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 GPR27Q9NS67 375 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 KCTD5Q9NXV2 234 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 RALYQ9UKM9 306 aaKnown RBP7.17□□□□□ -1.26
VPS41-208ENST00000448833 SIK3Q9Y2K2 1263 aa7.17□□□□□ -1.26
VPS41-208ENST00000448833 ARHGAP42A6NI28 874 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 LMO7DNF2Z398 122 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 FAM72CH0Y354 149 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 AREL1O15033 823 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 DAPK3O43293 454 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 CREB3O43889 395 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 LZTS3O60299 673 aaPredicted RBP7.16□□□□□ -1.26
VPS41-208ENST00000448833 DXOO77932 396 aaKnown RBP7.16□□□□□ -1.26
VPS41-208ENST00000448833 TMCC1O94876 653 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 CD160O95971 181 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 ANXA6P08133 673 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 CTSEP14091 401 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 LSSP48449 732 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 CSNK1DP48730 415 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 RENBPP51606 427 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 PCBP4P57723 403 aaKnown RBP7.16□□□□□ -1.26
VPS41-208ENST00000448833 PFN3P60673 137 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 PPARDQ03181 441 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 NSUN2Q08J23 767 aaKnown RBP eCLIP7.16□□□□□ -1.26
VPS41-208ENST00000448833 PTP4A2Q12974 167 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 COL9A2Q14055 689 aaPredicted RBP7.16□□□□□ -1.26
VPS41-208ENST00000448833 FZD2Q14332 565 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 RFTN1Q14699 578 aaPredicted RBP7.16□□□□□ -1.26
VPS41-208ENST00000448833 LRRC14Q15048 493 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 NR0B2Q15466 257 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 TBC1D25Q3MII6 688 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 ARTNQ5T4W7 220 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 FAXCQ5TGI0 409 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 FAM72AQ5TYM5 149 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 CDCP2Q5VXM1 449 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 FAM72DQ6L9T8 149 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 IGF2-ASQ6U949 168 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 KDM7AQ6ZMT4 941 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 TMC6Q7Z403 805 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 FAM72BQ86X60 149 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 SLC22A18ASQ8N1D0 253 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 LZTR1Q8N653 840 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 CCDC185Q8N715 623 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 PAF1Q8N7H5 531 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 ZNF548Q8NEK5 533 aaPredicted RBP7.16□□□□□ -1.26
VPS41-208ENST00000448833 MAPK15Q8TD08 544 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 CENPTQ96BT3 561 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 TRIM11Q96F44 468 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 KLF6Q99612 283 aaPredicted RBP7.16□□□□□ -1.26
VPS41-208ENST00000448833 DPH1Q9BZG8 443 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 SUV39H2Q9H5I1 410 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 ATP13A3Q9H7F0 1226 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 POLR1BQ9H9Y6 1135 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 MRPL47Q9HD33 250 aaKnown RBP7.16□□□□□ -1.26
VPS41-208ENST00000448833 THSD1Q9NS62 852 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 UCKL1Q9NWZ5 548 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 UBA2Q9UBT2 640 aaPredicted RBP7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms