RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 PARGQ86W56 976 aa17.3■□□□□ 0.36
PTPRF-209ENST00000438120 EPB41L4BQ9H329 900 aa17.3■□□□□ 0.36
PTPRF-209ENST00000438120 FAM105AQ9NUU6 356 aa17.3■□□□□ 0.36
PTPRF-209ENST00000438120 PCYOX1Q9UHG3 505 aa17.3■□□□□ 0.36
PTPRF-209ENST00000438120 PCDHB9Q9Y5E1 797 aa17.3■□□□□ 0.36
PTPRF-209ENST00000438120 LRRIQ1Q96JM4 1722 aa17.3■□□□□ 0.36
PTPRF-209ENST00000438120 LOC100506127A0A0U1RQW1 187 aa17.3■□□□□ 0.36
PTPRF-209ENST00000438120 ULK1O75385 1050 aa17.3■□□□□ 0.36
PTPRF-209ENST00000438120 PSMG1O95456 288 aa17.3■□□□□ 0.36
PTPRF-209ENST00000438120 ELNP15502 786 aa17.3■□□□□ 0.36
PTPRF-209ENST00000438120 OR1D2P34982 312 aa17.3■□□□□ 0.36
PTPRF-209ENST00000438120 CLCN5P51795 746 aa17.3■□□□□ 0.36
PTPRF-209ENST00000438120 KRR1Q13601 381 aaKnown RBP17.3■□□□□ 0.36
PTPRF-209ENST00000438120 FCRL2Q96LA5 508 aaPredicted RBP17.3■□□□□ 0.36
PTPRF-209ENST00000438120 RAD21L1Q9H4I0 556 aa17.3■□□□□ 0.36
PTPRF-209ENST00000438120 TNFAIP8O95379 198 aa17.3■□□□□ 0.36
PTPRF-209ENST00000438120 COPZ1P61923 177 aa17.3■□□□□ 0.36
PTPRF-209ENST00000438120 BST1Q10588 318 aa17.3■□□□□ 0.36
PTPRF-209ENST00000438120 ACAT2Q9BWD1 397 aa17.3■□□□□ 0.36
PTPRF-209ENST00000438120 MKL2Q9ULH7 1088 aa17.3■□□□□ 0.36
PTPRF-209ENST00000438120 C2CD2Q9Y426 696 aa17.3■□□□□ 0.36
PTPRF-209ENST00000438120 ITGAVP06756 1048 aa17.3■□□□□ 0.36
PTPRF-209ENST00000438120 ITGA2BP08514 1039 aa17.3■□□□□ 0.36
PTPRF-209ENST00000438120 DEFB115Q30KQ5 88 aa17.3■□□□□ 0.36
PTPRF-209ENST00000438120 ZACNQ401N2 412 aa17.3■□□□□ 0.36
PTPRF-209ENST00000438120 DCLRE1AQ6PJP8 1040 aa17.3■□□□□ 0.36
PTPRF-209ENST00000438120 HSD17B14Q9BPX1 270 aa17.3■□□□□ 0.36
PTPRF-209ENST00000438120 GSAPA4D1B5 854 aa17.3■□□□□ 0.36
PTPRF-209ENST00000438120 HOXC6P09630 235 aa17.3■□□□□ 0.36
PTPRF-209ENST00000438120 HGFP14210 728 aa17.3■□□□□ 0.36
PTPRF-209ENST00000438120 MATKP42679 507 aa17.3■□□□□ 0.36
PTPRF-209ENST00000438120 SEMA5AQ13591 1074 aa17.3■□□□□ 0.36
PTPRF-209ENST00000438120 LRRC38Q5VT99 294 aa17.3■□□□□ 0.36
PTPRF-209ENST00000438120 ZFP1Q6P2D0 407 aa17.3■□□□□ 0.36
PTPRF-209ENST00000438120 KRT73Q86Y46 540 aa17.3■□□□□ 0.36
PTPRF-209ENST00000438120 HOMEZQ8IX15 550 aa17.3■□□□□ 0.36
PTPRF-209ENST00000438120 CHPFQ8IZ52 775 aa17.3■□□□□ 0.36
PTPRF-209ENST00000438120 STK32AQ8WU08 396 aa17.3■□□□□ 0.36
PTPRF-209ENST00000438120 STARD8Q92502 1023 aa17.3■□□□□ 0.36
PTPRF-209ENST00000438120 CENPIQ92674 756 aaPredicted RBP17.3■□□□□ 0.36
PTPRF-209ENST00000438120 NCANO14594 1321 aa17.3■□□□□ 0.36
PTPRF-209ENST00000438120 ISM1B1AKI9 464 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 MDM4O15151 490 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 HOXB8P17481 243 aaPredicted RBP17.29■□□□□ 0.36
PTPRF-209ENST00000438120 GABRR2P28476 465 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 EPHA3P29320 983 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 TKTP29401 623 aaKnown RBP17.29■□□□□ 0.36
PTPRF-209ENST00000438120 TLX1P31314 330 aaPredicted RBP17.29■□□□□ 0.36
PTPRF-209ENST00000438120 IFNGR2P38484 337 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 DUSP4Q13115 394 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 PLA2G4EQ3MJ16 856 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 PLPP4Q5VZY2 271 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 RGMBQ6NW40 437 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 BPIFB6Q8NFQ5 453 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 QRFPRQ96P65 431 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 FERD3LQ96RJ6 166 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 ZNF670Q9BS34 389 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 ACSS2Q9NR19 701 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 C1QTNF3-AMACRE9PGA6 284 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 NEDD8-MDP1E9PL57 170 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 TGFB1I1O43294 461 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 MSCO60682 206 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 GUCY1B2O75343 617 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 ERAL1O75616 437 aaKnown RBP17.29■□□□□ 0.36
PTPRF-209ENST00000438120 MAPKAPK3Q16644 382 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 DEFB118Q96PH6 123 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 BRD9Q9H8M2 597 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 XPR1Q9UBH6 696 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 SYNPO2Q9UMS6 1093 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 CNTNAP1P78357 1384 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 SGTAO43765 313 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 CXCL14O95715 111 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 SNRPB2P08579 225 aaKnown RBP17.29■□□□□ 0.36
PTPRF-209ENST00000438120 COX4I1P13073 169 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 MC4RP32245 332 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 HSDL1Q3SXM5 330 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 HJURPQ8NCD3 748 aaPredicted RBP17.29■□□□□ 0.36
PTPRF-209ENST00000438120 UBASH3BQ8TF42 649 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 ART4Q93070 314 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 DUSP16Q9BY84 665 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 SAR1AQ9NR31 198 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 ZNF655Q8N720 491 aaPredicted RBP17.29■□□□□ 0.36
PTPRF-209ENST00000438120 C15orf38-AP3S2A0A0A6YYH1 394 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 A0A1W2PQH9 124 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 FARP2O94887 1054 aaPredicted RBP17.29■□□□□ 0.36
PTPRF-209ENST00000438120 ADH1AP07327 375 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 HYIQ5T013 277 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 C9orf57Q5W0N0 161 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 ARPINQ7Z6K5 226 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 LINGO1Q96FE5 620 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 DNAJC1Q96KC8 554 aaKnown RBP17.29■□□□□ 0.36
PTPRF-209ENST00000438120 FGFBP2Q9BYJ0 223 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 ATAD3AQ9NVI7 634 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 TOR4AQ9NXH8 423 aa17.29■□□□□ 0.36
PTPRF-209ENST00000438120 ZNF624Q9P2J8 865 aaPredicted RBP17.29■□□□□ 0.36
PTPRF-209ENST00000438120 OR10H2O60403 315 aa17.28■□□□□ 0.36
PTPRF-209ENST00000438120 PSEN1P49768 467 aa17.28■□□□□ 0.36
PTPRF-209ENST00000438120 CMC1Q7Z7K0 106 aa17.28■□□□□ 0.36
PTPRF-209ENST00000438120 C10orf107Q8IVU9 208 aa17.28■□□□□ 0.36
PTPRF-209ENST00000438120 EBNA1BP2Q99848 306 aaKnown RBP17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms