RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 KCNE2Q9Y6J6 123 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 WASHC1A8K0Z3 465 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 RHPN2P1A8MT19 583 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 WASH3PC4AMC7 463 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 GRM6O15303 877 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 MATN4O95460 622 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 ALOX12P18054 663 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 ACAT1P24752 427 aaKnown RBP6.91□□□□□ -1.3
SCN1A-204ENST00000423058 IL12BP29460 328 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 BUD31P41223 144 aaPredicted RBP6.91□□□□□ -1.3
SCN1A-204ENST00000423058 ALDH5A1P51649 535 aaPredicted RBP6.91□□□□□ -1.3
SCN1A-204ENST00000423058 RASGEF1BQ0VAM2 473 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 PPIGQ13427 754 aaKnown RBP eCLIP6.91□□□□□ -1.38e-7■■■□□ 15.7
SCN1A-204ENST00000423058 SF1Q15637 639 aaKnown RBP6.91□□□□□ -1.3
SCN1A-204ENST00000423058 OTUD3Q5T2D3 398 aaPredicted RBP6.91□□□□□ -1.3
SCN1A-204ENST00000423058 WASH2PQ6VEQ5 465 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 TCAIMQ8N3R3 496 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 TRNT1Q96Q11 434 aaKnown RBP6.91□□□□□ -1.3
SCN1A-204ENST00000423058 POMKQ9H5K3 350 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 PHPT1Q9NRX4 125 aaPredicted RBP6.91□□□□□ -1.3
SCN1A-204ENST00000423058 TRPS1Q9UHF7 1281 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 ASTN2O75129 1339 aaPredicted RBP6.91□□□□□ -1.3
SCN1A-204ENST00000423058 A0A1W2PRG6 482 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 GLUD1P00367 558 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 CAPGP40121 348 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 FXR1P51114 621 aaKnown RBP eCLIP6.91□□□□□ -1.3
SCN1A-204ENST00000423058 BLKP51451 505 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 STK4Q13043 487 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 PGM5Q15124 567 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 FAM98AQ8NCA5 519 aaKnown RBP6.91□□□□□ -1.3
SCN1A-204ENST00000423058 PSMA8Q8TAA3 256 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 KCTD5Q9NXV2 234 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.91□□□□□ -1.3
SCN1A-204ENST00000423058 UBAP1Q9NZ09 502 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 PTGFRNQ9P2B2 879 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 A0A096LPK6 155 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 LOC110117498-PIK3R3F6TDL0 507 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 TCEA3O75764 348 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 APOC1P02654 83 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 RARGP13631 454 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 S100A1P23297 94 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 CBX3Q13185 183 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 MTM1Q13496 603 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 OASLQ15646 514 aaKnown RBP6.91□□□□□ -1.3
SCN1A-204ENST00000423058 EPC2Q52LR7 807 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 DENND1CQ8IV53 801 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 ANKFN1Q8N957 763 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 DCAKDQ8WVC6 231 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 KBTBD7Q8WVZ9 684 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 PIK3R3Q92569 461 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 GULP1Q9UBP9 304 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 GPC6Q9Y625 555 aaPredicted RBP6.91□□□□□ -1.3
SCN1A-204ENST00000423058 CROCCQ5TZA2 2017 aa6.91□□□□□ -1.3
SCN1A-204ENST00000423058 NFATC1O95644 943 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 VIPP01282 170 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 MTTPP55157 894 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 SLC6A3Q01959 620 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 CCDC36Q8IYA8 594 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 ZNF276Q8N554 614 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 SLC28A3Q9HAS3 691 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 MOXD2PA6NHM9 499 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 LRRC72A6NJI9 287 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 FOXN3O00409 490 aaPredicted RBP6.9□□□□□ -1.3
SCN1A-204ENST00000423058 SLC25A14O95258 325 aaPredicted RBP6.9□□□□□ -1.3
SCN1A-204ENST00000423058 TAS2R50P59544 299 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 HSPA14Q0VDF9 509 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 TRAP1Q12931 704 aaKnown RBP6.9□□□□□ -1.3
SCN1A-204ENST00000423058 USP4Q13107 963 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 SEZ6Q53EL9 994 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 FAM92BQ6ZTR7 304 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 STOX1Q6ZVD7 989 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 ADAMTSL2Q86TH1 951 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 DENND1AQ8TEH3 1009 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 SHDQ96IW2 340 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 AIF1LQ9BQI0 150 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 POLMQ9NP87 494 aaPredicted RBP6.9□□□□□ -1.3
SCN1A-204ENST00000423058 CHKBQ9Y259 395 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 HBS1LQ9Y450 684 aaKnown RBP6.9□□□□□ -1.3
SCN1A-204ENST00000423058 SPATA31A5Q5VU36 1347 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 SPATA31A7Q8IWB4 1347 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 MYO3AQ8NEV4 1616 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 USP32Q8NFA0 1604 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 A8MX80 341 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 AGRPO00253 132 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 PLGP00747 810 aaPredicted RBP6.9□□□□□ -1.3
SCN1A-204ENST00000423058 MANFP55145 182 aaKnown RBP6.9□□□□□ -1.3
SCN1A-204ENST00000423058 ELP6Q0PNE2 266 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 GRSF1Q12849 480 aaKnown RBP eCLIP6.9□□□□□ -1.3
SCN1A-204ENST00000423058 LARS2Q15031 903 aaKnown RBP6.9□□□□□ -1.3
SCN1A-204ENST00000423058 HEATR4Q86WZ0 1026 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 DEFB107AQ8IZN7 70 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 ZCCHC7Q8N3Z6 543 aaKnown RBP6.9□□□□□ -1.3
SCN1A-204ENST00000423058 SRFBP1Q8NEF9 429 aaKnown RBP6.9□□□□□ -1.3
SCN1A-204ENST00000423058 DLG3Q92796 817 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 CELF6Q96J87 481 aaKnown RBP6.9□□□□□ -1.3
SCN1A-204ENST00000423058 VPS35Q96QK1 796 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 ARHGAP9Q9BRR9 750 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 ANKZF1Q9H8Y5 726 aa6.9□□□□□ -1.3
SCN1A-204ENST00000423058 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP6.9□□□□□ -1.3
SCN1A-204ENST00000423058 KLQ9UEF7 1012 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms