RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 WHAMMP3Q1A5X7 153 aa17.17■□□□□ 0.34
COL7A1-202ENST00000422991 P3H1Q32P28 736 aa17.17■□□□□ 0.34
COL7A1-202ENST00000422991 TTC31Q49AM3 519 aaPredicted RBP17.17■□□□□ 0.34
COL7A1-202ENST00000422991 ZNF805Q5CZA5 627 aa17.17■□□□□ 0.34
COL7A1-202ENST00000422991 CCDC137Q6PK04 289 aaKnown RBP17.17■□□□□ 0.34
COL7A1-202ENST00000422991 ARHGEF18Q6ZSZ5 1173 aa17.17■□□□□ 0.34
COL7A1-202ENST00000422991 ZNF572Q7Z3I7 529 aaPredicted RBP17.17■□□□□ 0.34
COL7A1-202ENST00000422991 PRPF39Q86UA1 669 aaKnown RBP17.17■□□□□ 0.34
COL7A1-202ENST00000422991 CAMK1DQ8IU85 385 aa17.17■□□□□ 0.34
COL7A1-202ENST00000422991 ATL2Q8NHH9 583 aa17.17■□□□□ 0.34
COL7A1-202ENST00000422991 PPP1R16AQ96I34 528 aa17.17■□□□□ 0.34
COL7A1-202ENST00000422991 ZNF641Q96N77 438 aaPredicted RBP17.17■□□□□ 0.34
COL7A1-202ENST00000422991 KLHL32Q96NJ5 620 aa17.17■□□□□ 0.34
COL7A1-202ENST00000422991 FCRL5Q96RD9 977 aa17.17■□□□□ 0.34
COL7A1-202ENST00000422991 RBM15Q96T37 977 aaKnown RBP eCLIP17.17■□□□□ 0.34
COL7A1-202ENST00000422991 GORASP1Q9BQQ3 440 aa17.17■□□□□ 0.34
COL7A1-202ENST00000422991 TPSD1Q9BZJ3 242 aa17.17■□□□□ 0.34
COL7A1-202ENST00000422991 DDX47Q9H0S4 455 aaKnown RBP17.17■□□□□ 0.34
COL7A1-202ENST00000422991 CD93Q9NPY3 652 aa17.17■□□□□ 0.34
COL7A1-202ENST00000422991 RSPH14Q9UHP6 348 aa17.17■□□□□ 0.34
COL7A1-202ENST00000422991 MRFAP1Q9Y605 127 aa17.17■□□□□ 0.34
COL7A1-202ENST00000422991 CCDC163A0A0D9SF12 145 aa17.16■□□□□ 0.34
COL7A1-202ENST00000422991 TSPAN11A1L157 253 aa17.16■□□□□ 0.34
COL7A1-202ENST00000422991 F5H423 210 aaPredicted RBP17.16■□□□□ 0.34
COL7A1-202ENST00000422991 CCDC188H7C350 402 aa17.16■□□□□ 0.34
COL7A1-202ENST00000422991 TRAFD1O14545 582 aaPredicted RBP17.16■□□□□ 0.34
COL7A1-202ENST00000422991 HTRA2O43464 458 aaPredicted RBP17.16■□□□□ 0.34
COL7A1-202ENST00000422991 IFNB1P01574 187 aa17.16■□□□□ 0.34
COL7A1-202ENST00000422991 IGLV3-19P01714 112 aa17.16■□□□□ 0.34
COL7A1-202ENST00000422991 ACADMP11310 421 aa17.16■□□□□ 0.34
COL7A1-202ENST00000422991 PSMB4P28070 264 aa17.16■□□□□ 0.34
COL7A1-202ENST00000422991 TPMTP51580 245 aa17.16■□□□□ 0.34
COL7A1-202ENST00000422991 LMNB2Q03252 620 aa17.16■□□□□ 0.34
COL7A1-202ENST00000422991 TRAF2Q12933 501 aa17.16■□□□□ 0.34
COL7A1-202ENST00000422991 TUBB2AQ13885 445 aa17.16■□□□□ 0.34
COL7A1-202ENST00000422991 ZNF528Q3MIS6 628 aa17.16■□□□□ 0.34
COL7A1-202ENST00000422991 PARS2Q7L3T8 475 aaKnown RBP17.16■□□□□ 0.34
COL7A1-202ENST00000422991 WDR5BQ86VZ2 330 aa17.16■□□□□ 0.34
COL7A1-202ENST00000422991 CCDC89Q8N998 374 aa17.16■□□□□ 0.34
COL7A1-202ENST00000422991 GLIS1Q8NBF1 620 aa17.16■□□□□ 0.34
COL7A1-202ENST00000422991 SPATA22Q8NHS9 363 aa17.16■□□□□ 0.34
COL7A1-202ENST00000422991 NELL1Q92832 810 aa17.16■□□□□ 0.34
COL7A1-202ENST00000422991 FAM131CQ96AQ9 280 aa17.16■□□□□ 0.34
COL7A1-202ENST00000422991 ECHDC3Q96DC8 303 aa17.16■□□□□ 0.34
COL7A1-202ENST00000422991 PHOX2BQ99453 314 aa17.16■□□□□ 0.34
COL7A1-202ENST00000422991 TUBB2BQ9BVA1 445 aa17.16■□□□□ 0.34
COL7A1-202ENST00000422991 HDAC8Q9BY41 377 aa17.16■□□□□ 0.34
COL7A1-202ENST00000422991 SUV39H2Q9H5I1 410 aa17.16■□□□□ 0.34
COL7A1-202ENST00000422991 FAM86C1Q9NVL1 165 aa17.16■□□□□ 0.34
COL7A1-202ENST00000422991 DKK3Q9UBP4 350 aa17.16■□□□□ 0.34
COL7A1-202ENST00000422991 SERGEFQ9UGK8 458 aa17.16■□□□□ 0.34
COL7A1-202ENST00000422991 PCDHGC4Q9Y5F7 938 aa17.16■□□□□ 0.34
COL7A1-202ENST00000422991 VPS13AQ96RL7 3174 aa17.15■□□□□ 0.34
COL7A1-202ENST00000422991 A0A1W2PP55 124 aa17.15■□□□□ 0.34
COL7A1-202ENST00000422991 PLK4O00444 970 aa17.15■□□□□ 0.34
COL7A1-202ENST00000422991 ETS1P14921 441 aa17.15■□□□□ 0.34
COL7A1-202ENST00000422991 P2RY2P41231 377 aa17.15■□□□□ 0.34
COL7A1-202ENST00000422991 FNTBP49356 437 aa17.15■□□□□ 0.34
COL7A1-202ENST00000422991 CKAP4Q07065 602 aaKnown RBP17.15■□□□□ 0.34
COL7A1-202ENST00000422991 CNTN1Q12860 1018 aa17.15■□□□□ 0.34
COL7A1-202ENST00000422991 USP30Q70CQ3 517 aa17.15■□□□□ 0.34
COL7A1-202ENST00000422991 GSTA5Q7RTV2 222 aa17.15■□□□□ 0.34
COL7A1-202ENST00000422991 PRUNE1Q86TP1 453 aa17.15■□□□□ 0.34
COL7A1-202ENST00000422991 ALYREFQ86V81 257 aaKnown RBP17.15■□□□□ 0.34
COL7A1-202ENST00000422991 SPATA4Q8NEY3 305 aa17.15■□□□□ 0.34
COL7A1-202ENST00000422991 HCAR2Q8TDS4 363 aa17.15■□□□□ 0.34
COL7A1-202ENST00000422991 GRK7Q8WTQ7 553 aa17.15■□□□□ 0.34
COL7A1-202ENST00000422991 SPOCK2Q92563 424 aa17.15■□□□□ 0.34
COL7A1-202ENST00000422991 OXNAD1Q96HP4 312 aaPredicted RBP17.15■□□□□ 0.34
COL7A1-202ENST00000422991 TDRD1Q9BXT4 1180 aaKnown RBP17.15■□□□□ 0.34
COL7A1-202ENST00000422991 FAM126AQ9BYI3 521 aaPredicted RBP17.15■□□□□ 0.34
COL7A1-202ENST00000422991 ITM2CQ9NQX7 267 aa17.15■□□□□ 0.34
COL7A1-202ENST00000422991 DYRK4Q9NR20 520 aa17.15■□□□□ 0.34
COL7A1-202ENST00000422991 FBXL12Q9NXK8 326 aa17.15■□□□□ 0.34
COL7A1-202ENST00000422991 FZD4Q9ULV1 537 aa17.15■□□□□ 0.34
COL7A1-202ENST00000422991 RAI2Q9Y5P3 530 aa17.15■□□□□ 0.34
COL7A1-202ENST00000422991 C16orf96A6NNT2 1141 aa17.14■□□□□ 0.33
COL7A1-202ENST00000422991 ZNF217O75362 1048 aa17.14■□□□□ 0.33
COL7A1-202ENST00000422991 RNASEH2AO75792 299 aaKnown RBP17.14■□□□□ 0.33
COL7A1-202ENST00000422991 METTL18O95568 372 aa17.14■□□□□ 0.33
COL7A1-202ENST00000422991 MT-CYBP00156 380 aaPredicted RBP17.14■□□□□ 0.33
COL7A1-202ENST00000422991 SP9P0CG40 484 aa17.14■□□□□ 0.33
COL7A1-202ENST00000422991 CA4P22748 312 aa17.14■□□□□ 0.33
COL7A1-202ENST00000422991 NBL1P41271 181 aa17.14■□□□□ 0.33
COL7A1-202ENST00000422991 SFSWAPQ12872 951 aaKnown RBP17.14■□□□□ 0.33
COL7A1-202ENST00000422991 PARP6Q2NL67 630 aa17.14■□□□□ 0.33
COL7A1-202ENST00000422991 MAP7D1Q3KQU3 841 aa17.14■□□□□ 0.33
COL7A1-202ENST00000422991 PIP5KL1Q5T9C9 394 aa17.14■□□□□ 0.33
COL7A1-202ENST00000422991 AGBL4Q5VU57 503 aa17.14■□□□□ 0.33
COL7A1-202ENST00000422991 BRAT1Q6PJG6 821 aa17.14■□□□□ 0.33
COL7A1-202ENST00000422991 KDELC1Q6UW63 502 aa17.14■□□□□ 0.33
COL7A1-202ENST00000422991 ERN2Q76MJ5 926 aaKnown RBP17.14■□□□□ 0.33
COL7A1-202ENST00000422991 KBTBD6Q86V97 674 aa17.14■□□□□ 0.33
COL7A1-202ENST00000422991 LONP2Q86WA8 852 aa17.14■□□□□ 0.33
COL7A1-202ENST00000422991 ZSWIM9Q86XI8 627 aa17.14■□□□□ 0.33
COL7A1-202ENST00000422991 KLHL7Q8IXQ5 586 aa17.14■□□□□ 0.33
COL7A1-202ENST00000422991 KLHDC8BQ8IXV7 354 aa17.14■□□□□ 0.33
COL7A1-202ENST00000422991 HDDC3Q8N4P3 179 aa17.14■□□□□ 0.33
COL7A1-202ENST00000422991 SLCO2A1Q92959 643 aa17.14■□□□□ 0.33
COL7A1-202ENST00000422991 OMDQ99983 421 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms