RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 DUSP12Q9UNI6 340 aa15□□□□□ -0.01
USP4-203ENST00000415188 TMEM114B3SHH9 223 aa14.99□□□□□ -0.01
USP4-203ENST00000415188 SPECC1L-ADORA2AF8WAN1 911 aa14.99□□□□□ -0.01
USP4-203ENST00000415188 KLHL2O95198 593 aa14.99□□□□□ -0.01
USP4-203ENST00000415188 C8AP07357 584 aa14.99□□□□□ -0.01
USP4-203ENST00000415188 OR1D2P34982 312 aa14.99□□□□□ -0.01
USP4-203ENST00000415188 HARS2P49590 506 aaKnown RBP14.99□□□□□ -0.01
USP4-203ENST00000415188 RAP1GDS1P52306 607 aa14.99□□□□□ -0.01
USP4-203ENST00000415188 RPL10AP62906 217 aaKnown RBP14.99□□□□□ -0.01
USP4-203ENST00000415188 NTHL1P78549 312 aa14.99□□□□□ -0.01
USP4-203ENST00000415188 MPP3Q13368 585 aa14.99□□□□□ -0.01
USP4-203ENST00000415188 HSF5Q4G112 596 aaPredicted RBP14.99□□□□□ -0.01
USP4-203ENST00000415188 MANEALQ5VSG8 457 aa14.99□□□□□ -0.01
USP4-203ENST00000415188 TIGD7Q6NT04 549 aaPredicted RBP14.99□□□□□ -0.01
USP4-203ENST00000415188 CLEC14AQ86T13 490 aa14.99□□□□□ -0.01
USP4-203ENST00000415188 KCNMB4Q86W47 210 aa14.99□□□□□ -0.01
USP4-203ENST00000415188 TMPRSS6Q8IU80 811 aa14.99□□□□□ -0.01
USP4-203ENST00000415188 ATPAF2Q8N5M1 289 aa14.99□□□□□ -0.01
USP4-203ENST00000415188 NETO2Q8NC67 525 aa14.99□□□□□ -0.01
USP4-203ENST00000415188 ZSCAN18Q8TBC5 510 aaPredicted RBP14.99□□□□□ -0.01
USP4-203ENST00000415188 RDH11Q8TC12 318 aa14.99□□□□□ -0.01
USP4-203ENST00000415188 AGAP3Q96P47 875 aa14.99□□□□□ -0.01
USP4-203ENST00000415188 NUDCD1Q96RS6 583 aa14.99□□□□□ -0.01
USP4-203ENST00000415188 MCMBPQ9BTE3 642 aa14.99□□□□□ -0.01
USP4-203ENST00000415188 DENND2DQ9H6A0 471 aaPredicted RBP14.99□□□□□ -0.01
USP4-203ENST00000415188 MRM3Q9HC36 420 aaKnown RBP14.99□□□□□ -0.01
USP4-203ENST00000415188 SLC17A6Q9P2U8 582 aa14.99□□□□□ -0.01
USP4-203ENST00000415188 EPS15L1Q9UBC2 864 aa14.99□□□□□ -0.01
USP4-203ENST00000415188 NEU3Q9UQ49 428 aa14.99□□□□□ -0.01
USP4-203ENST00000415188 MYO16Q9Y6X6 1858 aa14.99□□□□□ -0.01
USP4-203ENST00000415188 NUP205Q92621 2012 aa14.98□□□□□ -0.01
USP4-203ENST00000415188 CCL16O15467 120 aa14.98□□□□□ -0.01
USP4-203ENST00000415188 JCHAINP01591 159 aa14.98□□□□□ -0.01
USP4-203ENST00000415188 PRKCGP05129 697 aa14.98□□□□□ -0.01
USP4-203ENST00000415188 CPA3P15088 417 aa14.98□□□□□ -0.01
USP4-203ENST00000415188 GNAZP19086 355 aa14.98□□□□□ -0.01
USP4-203ENST00000415188 AOC1P19801 751 aa14.98□□□□□ -0.01
USP4-203ENST00000415188 CCR1P32246 355 aa14.98□□□□□ -0.01
USP4-203ENST00000415188 GEMP55040 296 aa14.98□□□□□ -0.01
USP4-203ENST00000415188 ABCE1P61221 599 aaKnown RBP14.98□□□□□ -0.01
USP4-203ENST00000415188 RAB33AQ14088 237 aa14.98□□□□□ -0.01
USP4-203ENST00000415188 UGP2Q16851 508 aa14.98□□□□□ -0.01
USP4-203ENST00000415188 PPM1LQ5SGD2 360 aa14.98□□□□□ -0.01
USP4-203ENST00000415188 BTBD8Q5XKL5 378 aa14.98□□□□□ -0.01
USP4-203ENST00000415188 C16orf46Q6P387 395 aa14.98□□□□□ -0.01
USP4-203ENST00000415188 GRASPQ7Z6J2 395 aaPredicted RBP14.98□□□□□ -0.01
USP4-203ENST00000415188 SPATA2LQ8IUW3 424 aaPredicted RBP14.98□□□□□ -0.01
USP4-203ENST00000415188 OR10T2Q8NGX3 314 aa14.98□□□□□ -0.01
USP4-203ENST00000415188 OR6Y1Q8NGX8 325 aa14.98□□□□□ -0.01
USP4-203ENST00000415188 NSMCE1Q8WV22 266 aa14.98□□□□□ -0.01
USP4-203ENST00000415188 STON2Q8WXE9 905 aa14.98□□□□□ -0.01
USP4-203ENST00000415188 IL12RB2Q99665 862 aa14.98□□□□□ -0.01
USP4-203ENST00000415188 PRRX2Q99811 253 aa14.98□□□□□ -0.01
USP4-203ENST00000415188 CCDC106Q9BWC9 280 aa14.98□□□□□ -0.01
USP4-203ENST00000415188 C1orf21Q9H246 121 aa14.98□□□□□ -0.01
USP4-203ENST00000415188 MFSD1Q9H3U5 465 aa14.98□□□□□ -0.01
USP4-203ENST00000415188 TMLHEQ9NVH6 421 aa14.98□□□□□ -0.01
USP4-203ENST00000415188 FAM86C1Q9NVL1 165 aa14.98□□□□□ -0.01
USP4-203ENST00000415188 PIH1D1Q9NWS0 290 aaKnown RBP14.98□□□□□ -0.01
USP4-203ENST00000415188 DONSONQ9NYP3 566 aa14.98□□□□□ -0.01
USP4-203ENST00000415188 TAS2R1Q9NYW7 299 aa14.98□□□□□ -0.01
USP4-203ENST00000415188 APOBEC2Q9Y235 224 aaKnown RBP14.98□□□□□ -0.01
USP4-203ENST00000415188 DNAJC16Q9Y2G8 782 aa14.98□□□□□ -0.01
USP4-203ENST00000415188 CDY1Q9Y6F8 540 aa14.98□□□□□ -0.01
USP4-203ENST00000415188 DOCK8Q8NF50 2099 aa14.98□□□□□ -0.01
USP4-203ENST00000415188 DOCK6Q96HP0 2047 aa14.98□□□□□ -0.01
USP4-203ENST00000415188 VGLL3A8MV65 326 aa14.97□□□□□ -0.01
USP4-203ENST00000415188 WASH4PA8MWX3 477 aa14.97□□□□□ -0.01
USP4-203ENST00000415188 TPBGLP0DKB5 382 aa14.97□□□□□ -0.01
USP4-203ENST00000415188 RALBP11234 206 aa14.97□□□□□ -0.01
USP4-203ENST00000415188 LAMP2P13473 410 aa14.97□□□□□ -0.01
USP4-203ENST00000415188 FSHRP23945 695 aa14.97□□□□□ -0.01
USP4-203ENST00000415188 GCKP35557 465 aa14.97□□□□□ -0.01
USP4-203ENST00000415188 HK2P52789 917 aa14.97□□□□□ -0.01
USP4-203ENST00000415188 ANO4Q32M45 955 aa14.97□□□□□ -0.01
USP4-203ENST00000415188 ACCSLQ4AC99 568 aa14.97□□□□□ -0.01
USP4-203ENST00000415188 PCID2Q5JVF3 399 aa14.97□□□□□ -0.01
USP4-203ENST00000415188 AFMIDQ63HM1 303 aa14.97□□□□□ -0.01
USP4-203ENST00000415188 CWF19L1Q69YN2 538 aaKnown RBP14.97□□□□□ -0.01
USP4-203ENST00000415188 RINLQ6ZS11 566 aa14.97□□□□□ -0.01
USP4-203ENST00000415188 TTC7BQ86TV6 843 aa14.97□□□□□ -0.01
USP4-203ENST00000415188 ARHGAP18Q8N392 663 aa14.97□□□□□ -0.01
USP4-203ENST00000415188 FLCNQ8NFG4 579 aa14.97□□□□□ -0.01
USP4-203ENST00000415188 FATE1Q969F0 183 aa14.97□□□□□ -0.01
USP4-203ENST00000415188 PRR11Q96HE9 360 aaPredicted RBP14.97□□□□□ -0.01
USP4-203ENST00000415188 RILPQ96NA2 401 aa14.97□□□□□ -0.01
USP4-203ENST00000415188 TSNARE1Q96NA8 513 aa14.97□□□□□ -0.01
USP4-203ENST00000415188 RHOJQ9H4E5 214 aa14.97□□□□□ -0.01
USP4-203ENST00000415188 GLOD4Q9HC38 313 aa14.97□□□□□ -0.01
USP4-203ENST00000415188 C20orf96Q9NUD7 363 aaPredicted RBP14.97□□□□□ -0.01
USP4-203ENST00000415188 TMEM216Q9P0N5 145 aa14.97□□□□□ -0.01
USP4-203ENST00000415188 FBXL21Q9UKT6 434 aa14.97□□□□□ -0.01
USP4-203ENST00000415188 A0A096LPK6 155 aa14.96□□□□□ -0.01
USP4-203ENST00000415188 F8W8V4 182 aa14.96□□□□□ -0.01
USP4-203ENST00000415188 TNFRSF10BO14763 440 aa14.96□□□□□ -0.01
USP4-203ENST00000415188 MATN3O15232 486 aa14.96□□□□□ -0.01
USP4-203ENST00000415188 DIAPH2O60879 1101 aa14.96□□□□□ -0.01
USP4-203ENST00000415188 USP12O75317 370 aa14.96□□□□□ -0.01
USP4-203ENST00000415188 HNRNPA1P09651 372 aaKnown RBP eCLIP14.96□□□□□ -0.01
USP4-203ENST00000415188 SLC2A3P11169 496 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms