RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 UGP2Q16851 508 aa12.05□□□□□ -0.48
HMGB1-206ENST00000405805 NADK2Q4G0N4 442 aa12.05□□□□□ -0.48
HMGB1-206ENST00000405805 NOTUMQ6P988 496 aa12.05□□□□□ -0.48
HMGB1-206ENST00000405805 RAVER1Q8IY67 606 aaKnown RBP12.05□□□□□ -0.48
HMGB1-206ENST00000405805 EFHBQ8N7U6 833 aa12.05□□□□□ -0.48
HMGB1-206ENST00000405805 GALNT6Q8NCL4 622 aa12.05□□□□□ -0.48
HMGB1-206ENST00000405805 DNAJB14Q8TBM8 379 aa12.05□□□□□ -0.48
HMGB1-206ENST00000405805 LRTOMTQ8WZ04 291 aa12.05□□□□□ -0.48
HMGB1-206ENST00000405805 NIFKQ9BYG3 293 aaKnown RBP12.05□□□□□ -0.48
HMGB1-206ENST00000405805 TIMMDC1Q9NPL8 285 aa12.05□□□□□ -0.48
HMGB1-206ENST00000405805 GIN1Q9NXP7 522 aa12.05□□□□□ -0.48
HMGB1-206ENST00000405805 UBQLN1Q9UMX0 589 aaKnown RBP12.05□□□□□ -0.48
HMGB1-206ENST00000405805 FADS3Q9Y5Q0 445 aa12.05□□□□□ -0.48
HMGB1-206ENST00000405805 TNFRSF21O75509 655 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 CYP2B6P20813 491 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 PTGS2P35354 604 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 ZNF132P52740 706 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 NR1H2P55055 460 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 LSM3P62310 102 aaKnown RBP12.04□□□□□ -0.48
HMGB1-206ENST00000405805 GRIK4Q16099 956 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 ADRM1Q16186 407 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 C4orf22Q6V702 233 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 DNAJC14Q6Y2X3 702 aaPredicted RBP12.04□□□□□ -0.48
HMGB1-206ENST00000405805 NAT16Q8N8M0 369 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 IFT43Q96FT9 208 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 ZNF778Q96MU6 729 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 FTHL17Q9BXU8 183 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 REXO4Q9GZR2 422 aaKnown RBP12.04□□□□□ -0.48
HMGB1-206ENST00000405805 CPA4Q9UI42 421 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 BTRCQ9Y297 605 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 SUPT3HB4E1H0 165 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 E7ESA3 106 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 FZD9O00144 591 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 PSMD12O00232 456 aaPredicted RBP12.04□□□□□ -0.48
HMGB1-206ENST00000405805 ZBTB14O43829 449 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 GAS2O43903 313 aaKnown RBP12.04□□□□□ -0.48
HMGB1-206ENST00000405805 FGF3P11487 239 aaPredicted RBP12.04□□□□□ -0.48
HMGB1-206ENST00000405805 PCNAP12004 261 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 LRPAP1P30533 357 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 ENTPD1P49961 510 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 SLC7A2P52569 658 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 BLVRAP53004 296 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 LAMC2Q13753 1193 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 PCLAFQ15004 111 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 OR52E8Q6IFG1 317 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 ELMO1Q92556 727 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 GLMNQ92990 594 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 BBS2Q9BXC9 721 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 PDZD7Q9H5P4 517 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 PMF1-BGLAPU3KQ54 211 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 UNCXA6NJT0 531 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 H3BSA7 217 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 CHRNA4P43681 627 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 MBTD1Q05BQ5 628 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 CAPRIN1Q14444 709 aaKnown RBP12.04□□□□□ -0.48
HMGB1-206ENST00000405805 SPANXN3Q5MJ09 141 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 MBLAC2Q68D91 279 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 METTL23Q86XA0 190 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 MAPK15Q8TD08 544 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 NSMCE3Q96MG7 304 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 CRTAMO95727 393 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 TSHRP16473 764 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 HOXD11P31277 338 aaPredicted RBP12.04□□□□□ -0.48
HMGB1-206ENST00000405805 EPHX2P34913 555 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 CCT3P49368 545 aaKnown RBP12.04□□□□□ -0.48
HMGB1-206ENST00000405805 CLK1P49759 484 aaKnown RBP12.04□□□□□ -0.48
HMGB1-206ENST00000405805 CDH17Q12864 832 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 GK3PQ14409 553 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 PLCL1Q15111 1095 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 AAGABQ6PD74 315 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 HFE2Q6ZVN8 426 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 NT5DC4Q86YG4 428 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 MIER2Q8N344 545 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 OR9I1Q8NGQ6 314 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 TRIM63Q969Q1 353 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 HBEGFQ99075 208 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 CCDC106Q9BWC9 280 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 AP5M1Q9H0R1 490 aa12.04□□□□□ -0.48
HMGB1-206ENST00000405805 C6orf203Q9P0P8 240 aaPredicted RBP12.04□□□□□ -0.48
HMGB1-206ENST00000405805 PABPN1LA6NDY0 278 aaKnown RBP12.03□□□□□ -0.48
HMGB1-206ENST00000405805 SCAMP3O14828 347 aaKnown RBP12.03□□□□□ -0.48
HMGB1-206ENST00000405805 CLIC3O95833 236 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 BDNFP23560 247 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 RBBP7Q16576 425 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 NOMO2Q5JPE7 1267 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 TRNP1Q6NT89 227 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 ESRP1Q6NXG1 681 aaKnown RBP12.03□□□□□ -0.48
HMGB1-206ENST00000405805 FSTL5Q8N475 847 aaPredicted RBP12.03□□□□□ -0.48
HMGB1-206ENST00000405805 ANKRD52Q8NB46 1076 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 LPGAT1Q92604 370 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 EHD1Q9H4M9 534 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 RPRD1BQ9NQG5 326 aaKnown RBP12.03□□□□□ -0.48
HMGB1-206ENST00000405805 DMTF1Q9Y222 760 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 FAM159BA6NKW6 160 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 PDLIM1O00151 329 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 MYCP01106 439 aaPredicted RBP12.03□□□□□ -0.48
HMGB1-206ENST00000405805 IQCF3P0C7M6 154 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 HADHAP40939 763 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 CCNIQ14094 377 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 NDUFA5Q16718 116 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms