RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 ETFBKMTQ8IXQ9 262 aa27.09■■□□□ 1.93
MSX1-201ENST00000382723 UNC5BQ8IZJ1 945 aa27.09■■□□□ 1.93
MSX1-201ENST00000382723 CPA6Q8N4T0 437 aa27.09■■□□□ 1.93
MSX1-201ENST00000382723 SH2D3CQ8N5H7 860 aa27.09■■□□□ 1.93
MSX1-201ENST00000382723 CYB5D2Q8WUJ1 264 aa27.09■■□□□ 1.93
MSX1-201ENST00000382723 ZNF669Q96BR6 464 aaPredicted RBP27.09■■□□□ 1.93
MSX1-201ENST00000382723 FCRL3Q96P31 734 aaPredicted RBP27.09■■□□□ 1.93
MSX1-201ENST00000382723 TBK1Q9UHD2 729 aa27.09■■□□□ 1.93
MSX1-201ENST00000382723 RAI2Q9Y5P3 530 aa27.09■■□□□ 1.93
MSX1-201ENST00000382723 MAGEB16A2A368 324 aa27.08■■□□□ 1.93
MSX1-201ENST00000382723 RGS16O15492 202 aaPredicted RBP27.08■■□□□ 1.93
MSX1-201ENST00000382723 BNIP3LO60238 219 aa27.08■■□□□ 1.93
MSX1-201ENST00000382723 ZNF821O75541 412 aaPredicted RBP27.08■■□□□ 1.93
MSX1-201ENST00000382723 MESP2Q0VG99 397 aa27.08■■□□□ 1.93
MSX1-201ENST00000382723 NR1H3Q13133 447 aa27.08■■□□□ 1.93
MSX1-201ENST00000382723 RUNX3Q13761 415 aa27.08■■□□□ 1.93
MSX1-201ENST00000382723 SEPT6Q14141 434 aa27.08■■□□□ 1.93
MSX1-201ENST00000382723 SLC14A2Q15849 920 aa27.08■■□□□ 1.93
MSX1-201ENST00000382723 PCID2Q5JVF3 399 aa27.08■■□□□ 1.93
MSX1-201ENST00000382723 CROCCP2Q86T23 111 aa27.08■■□□□ 1.93
MSX1-201ENST00000382723 RYBPQ8N488 228 aaPredicted RBP27.08■■□□□ 1.93
MSX1-201ENST00000382723 PDCD6IPQ8WUM4 868 aaKnown RBP27.08■■□□□ 1.93
MSX1-201ENST00000382723 SUSD6Q92537 303 aa27.08■■□□□ 1.93
MSX1-201ENST00000382723 ATP6V1G3Q96LB4 118 aa27.08■■□□□ 1.93
MSX1-201ENST00000382723 PPANQ9NQ55 473 aaKnown RBP27.08■■□□□ 1.93
MSX1-201ENST00000382723 EVLQ9UI08 416 aaPredicted RBP27.08■■□□□ 1.93
MSX1-201ENST00000382723 SOX13Q9UN79 622 aa27.08■■□□□ 1.93
MSX1-201ENST00000382723 GCAP28676 217 aa27.08■■□□□ 1.93
MSX1-201ENST00000382723 KDSRQ06136 332 aa27.08■■□□□ 1.93
MSX1-201ENST00000382723 PPHLN1Q8NEY8 458 aaKnown RBP27.08■■□□□ 1.93
MSX1-201ENST00000382723 TTC17Q96AE7 1141 aa27.08■■□□□ 1.93
MSX1-201ENST00000382723 MFSD3Q96ES6 412 aa27.08■■□□□ 1.93
MSX1-201ENST00000382723 TRIB3Q96RU7 358 aa27.08■■□□□ 1.93
MSX1-201ENST00000382723 TDRD1Q9BXT4 1180 aaKnown RBP27.08■■□□□ 1.93
MSX1-201ENST00000382723 DEC1Q9P2X7 70 aa27.08■■□□□ 1.93
MSX1-201ENST00000382723 ERVW-1Q9UQF0 538 aa27.08■■□□□ 1.93
MSX1-201ENST00000382723 NUMBLQ9Y6R0 609 aa27.08■■□□□ 1.93
MSX1-201ENST00000382723 DOCK8Q8NF50 2099 aa27.08■■□□□ 1.93
MSX1-201ENST00000382723 CXorf51AA0A1B0GTR3 108 aa27.07■■□□□ 1.92
MSX1-201ENST00000382723 ECI2O75521 394 aa27.07■■□□□ 1.92
MSX1-201ENST00000382723 EPOP01588 193 aa27.07■■□□□ 1.92
MSX1-201ENST00000382723 HLA-DPA1P20036 260 aa27.07■■□□□ 1.92
MSX1-201ENST00000382723 KCNA5P22460 613 aa27.07■■□□□ 1.92
MSX1-201ENST00000382723 SPANXN3Q5MJ09 141 aa27.07■■□□□ 1.92
MSX1-201ENST00000382723 C22orf39Q6P5X5 142 aa27.07■■□□□ 1.92
MSX1-201ENST00000382723 ZNF778Q96MU6 729 aa27.07■■□□□ 1.92
MSX1-201ENST00000382723 TRMT61BQ9BVS5 477 aaKnown RBP27.07■■□□□ 1.92
MSX1-201ENST00000382723 IL1RAPL1Q9NZN1 696 aa27.07■■□□□ 1.92
MSX1-201ENST00000382723 FAM237BA0A1B0GVD1 139 aa27.06■■□□□ 1.92
MSX1-201ENST00000382723 NDST3O95803 873 aa27.06■■□□□ 1.92
MSX1-201ENST00000382723 IGSF6O95976 241 aa27.06■■□□□ 1.92
MSX1-201ENST00000382723 NMBRP28336 390 aa27.06■■□□□ 1.92
MSX1-201ENST00000382723 GKP32189 559 aa27.06■■□□□ 1.92
MSX1-201ENST00000382723 TRAF2Q12933 501 aa27.06■■□□□ 1.92
MSX1-201ENST00000382723 SKIV2LQ15477 1246 aaKnown RBP27.06■■□□□ 1.92
MSX1-201ENST00000382723 DLG2Q15700 870 aa27.06■■□□□ 1.92
MSX1-201ENST00000382723 ANKRD20A4Q4UJ75 823 aa27.06■■□□□ 1.92
MSX1-201ENST00000382723 NAIF1Q69YI7 327 aaPredicted RBP27.06■■□□□ 1.92
MSX1-201ENST00000382723 GRAMD4Q6IC98 578 aa27.06■■□□□ 1.92
MSX1-201ENST00000382723 TMEM135Q86UB9 458 aa27.06■■□□□ 1.92
MSX1-201ENST00000382723 CTAGE3PQ8IX95 158 aa27.06■■□□□ 1.92
MSX1-201ENST00000382723 RMDN1Q96DB5 314 aa27.06■■□□□ 1.92
MSX1-201ENST00000382723 KIFC1Q9BW19 673 aa27.06■■□□□ 1.92
MSX1-201ENST00000382723 NOVA2Q9UNW9 492 aaKnown RBP27.06■■□□□ 1.92
MSX1-201ENST00000382723 SLC27A6Q9Y2P4 619 aa27.06■■□□□ 1.92
MSX1-201ENST00000382723 GRXCR2A6NFK2 248 aa27.06■■□□□ 1.92
MSX1-201ENST00000382723 FGF1P05230 155 aa27.06■■□□□ 1.92
MSX1-201ENST00000382723 PDHA1P08559 390 aa27.06■■□□□ 1.92
MSX1-201ENST00000382723 AP1S1P61966 158 aa27.06■■□□□ 1.92
MSX1-201ENST00000382723 PKN3Q6P5Z2 889 aa27.06■■□□□ 1.92
MSX1-201ENST00000382723 MTSS1LQ765P7 747 aa27.06■■□□□ 1.92
MSX1-201ENST00000382723 OR2AP1Q8NGE2 309 aa27.06■■□□□ 1.92
MSX1-201ENST00000382723 WFIKKN2Q8TEU8 576 aa27.06■■□□□ 1.92
MSX1-201ENST00000382723 PGM2Q96G03 612 aa27.06■■□□□ 1.92
MSX1-201ENST00000382723 PAFAH2Q99487 392 aa27.06■■□□□ 1.92
MSX1-201ENST00000382723 MOCS1Q9NZB8 636 aa27.06■■□□□ 1.92
MSX1-201ENST00000382723 EPS15L1Q9UBC2 864 aa27.06■■□□□ 1.92
MSX1-201ENST00000382723 TCAF1Q9Y4C2 921 aa27.06■■□□□ 1.92
MSX1-201ENST00000382723 EYSQ5T1H1 3165 aa27.06■■□□□ 1.92
MSX1-201ENST00000382723 CXorf49A8MYA2 514 aaPredicted RBP27.05■■□□□ 1.92
MSX1-201ENST00000382723 POLR3GO15318 223 aaPredicted RBP27.05■■□□□ 1.92
MSX1-201ENST00000382723 CDH16O75309 829 aa27.05■■□□□ 1.92
MSX1-201ENST00000382723 USP1O94782 785 aa27.05■■□□□ 1.92
MSX1-201ENST00000382723 C1QAP02745 245 aa27.05■■□□□ 1.92
MSX1-201ENST00000382723 PRKCGP05129 697 aa27.05■■□□□ 1.92
MSX1-201ENST00000382723 PIRTP0C851 137 aa27.05■■□□□ 1.92
MSX1-201ENST00000382723 PRKCHP24723 683 aa27.05■■□□□ 1.92
MSX1-201ENST00000382723 RALGPS1Q5JS13 557 aa27.05■■□□□ 1.92
MSX1-201ENST00000382723 PPM1NQ8N819 430 aa27.05■■□□□ 1.92
MSX1-201ENST00000382723 SERBP1Q8NC51 408 aaKnown RBP eCLIP27.05■■□□□ 1.92
MSX1-201ENST00000382723 LPCAT1Q8NF37 534 aa27.05■■□□□ 1.92
MSX1-201ENST00000382723 PPM1EQ8WY54 764 aa27.05■■□□□ 1.92
MSX1-201ENST00000382723 ISG20Q96AZ6 181 aaKnown RBP27.05■■□□□ 1.92
MSX1-201ENST00000382723 SMYD2Q9NRG4 433 aa27.05■■□□□ 1.92
MSX1-201ENST00000382723 VPS18Q9P253 973 aa27.05■■□□□ 1.92
MSX1-201ENST00000382723 ARIH1Q9Y4X5 557 aaPredicted RBP27.05■■□□□ 1.92
MSX1-201ENST00000382723 PRLP01236 227 aa27.04■■□□□ 1.92
MSX1-201ENST00000382723 ADRA1DP25100 572 aa27.04■■□□□ 1.92
MSX1-201ENST00000382723 GJA4P35212 333 aa27.04■■□□□ 1.92
MSX1-201ENST00000382723 MSH2P43246 934 aa27.04■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms