RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 KRT86O43790 486 aa13.51□□□□□ -0.25
VPS28-202ENST00000377348 RNGTTO60942 597 aaKnown RBP13.51□□□□□ -0.25
VPS28-202ENST00000377348 PCDH8O95206 1070 aa13.51□□□□□ -0.25
VPS28-202ENST00000377348 PYGMP11217 842 aa13.51□□□□□ -0.25
VPS28-202ENST00000377348 GNSP15586 552 aa13.51□□□□□ -0.25
VPS28-202ENST00000377348 TIMP2P16035 220 aa13.51□□□□□ -0.25
VPS28-202ENST00000377348 CR2P20023 1033 aa13.51□□□□□ -0.25
VPS28-202ENST00000377348 CCNCP24863 283 aa13.51□□□□□ -0.25
VPS28-202ENST00000377348 CD27P26842 260 aa13.51□□□□□ -0.25
VPS28-202ENST00000377348 HOXD12P35452 270 aa13.51□□□□□ -0.25
VPS28-202ENST00000377348 DPP6P42658 865 aa13.51□□□□□ -0.25
VPS28-202ENST00000377348 CSNK1DP48730 415 aa13.51□□□□□ -0.25
VPS28-202ENST00000377348 CCR5P51681 352 aa13.51□□□□□ -0.25
VPS28-202ENST00000377348 RWDD2BP57060 319 aa13.51□□□□□ -0.25
VPS28-202ENST00000377348 BCL2L1Q07817 233 aa13.51□□□□□ -0.25
VPS28-202ENST00000377348 CCDC15Q0P6D6 951 aa13.51□□□□□ -0.25
VPS28-202ENST00000377348 ZNF211Q13398 564 aaPredicted RBP13.51□□□□□ -0.25
VPS28-202ENST00000377348 HNRNPDQ14103 355 aaKnown RBP13.51□□□□□ -0.25
VPS28-202ENST00000377348 TFDP2Q14188 446 aa13.51□□□□□ -0.25
VPS28-202ENST00000377348 SEL1L3Q68CR1 1132 aa13.51□□□□□ -0.25
VPS28-202ENST00000377348 TIGD7Q6NT04 549 aaPredicted RBP13.51□□□□□ -0.25
VPS28-202ENST00000377348 SLC23A3Q6PIS1 610 aa13.51□□□□□ -0.25
VPS28-202ENST00000377348 SYCE1Q8N0S2 351 aa13.51□□□□□ -0.25
VPS28-202ENST00000377348 BBS5Q8N3I7 341 aa13.51□□□□□ -0.25
VPS28-202ENST00000377348 RNF10Q8N5U6 811 aaKnown RBP13.51□□□□□ -0.25
VPS28-202ENST00000377348 TEX26Q8N6G2 289 aa13.51□□□□□ -0.25
VPS28-202ENST00000377348 SLC6A18Q96N87 628 aa13.51□□□□□ -0.25
VPS28-202ENST00000377348 MGME1Q9BQP7 344 aa13.51□□□□□ -0.25
VPS28-202ENST00000377348 CEP41Q9BYV8 373 aa13.51□□□□□ -0.25
VPS28-202ENST00000377348 KCNF1Q9H3M0 494 aa13.51□□□□□ -0.25
VPS28-202ENST00000377348 KDM4CQ9H3R0 1056 aa13.51□□□□□ -0.25
VPS28-202ENST00000377348 SUV39H2Q9H5I1 410 aa13.51□□□□□ -0.25
VPS28-202ENST00000377348 CAPN10Q9HC96 672 aa13.51□□□□□ -0.25
VPS28-202ENST00000377348 PREBQ9HCU5 417 aa13.51□□□□□ -0.25
VPS28-202ENST00000377348 TM9SF3Q9HD45 589 aa13.51□□□□□ -0.25
VPS28-202ENST00000377348 SCUBE2Q9NQ36 999 aa13.51□□□□□ -0.25
VPS28-202ENST00000377348 RBM22Q9NW64 420 aaKnown RBP eCLIP13.51□□□□□ -0.25
VPS28-202ENST00000377348 SUSD2Q9UGT4 822 aa13.51□□□□□ -0.25
VPS28-202ENST00000377348 SLC6A14Q9UN76 642 aa13.51□□□□□ -0.25
VPS28-202ENST00000377348 ZFR2Q9UPR6 939 aaKnown RBP13.51□□□□□ -0.25
VPS28-202ENST00000377348 PPP2R2CQ9Y2T4 447 aa13.51□□□□□ -0.25
VPS28-202ENST00000377348 TTLL3Q9Y4R7 772 aa13.51□□□□□ -0.25
VPS28-202ENST00000377348 SPTBN4Q9H254 2564 aa13.5□□□□□ -0.25
VPS28-202ENST00000377348 A0A1B0GTW7 788 aa13.5□□□□□ -0.25
VPS28-202ENST00000377348 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.5□□□□□ -0.25
VPS28-202ENST00000377348 WNT9AO14904 365 aa13.5□□□□□ -0.25
VPS28-202ENST00000377348 BCAT2O15382 392 aaPredicted RBP13.5□□□□□ -0.25
VPS28-202ENST00000377348 LATO43561 262 aa13.5□□□□□ -0.25
VPS28-202ENST00000377348 NRDCO43847 1150 aa13.5□□□□□ -0.25
VPS28-202ENST00000377348 PRKCGP05129 697 aa13.5□□□□□ -0.25
VPS28-202ENST00000377348 HLA-DQB2P05538 268 aa13.5□□□□□ -0.25
VPS28-202ENST00000377348 PTMAP06454 111 aaKnown RBP13.5□□□□□ -0.25
VPS28-202ENST00000377348 SERPINF2P08697 491 aa13.5□□□□□ -0.25
VPS28-202ENST00000377348 CCNB1P14635 433 aa13.5□□□□□ -0.25
VPS28-202ENST00000377348 PRLRP16471 622 aa13.5□□□□□ -0.25
VPS28-202ENST00000377348 SERPINA4P29622 427 aa13.5□□□□□ -0.25
VPS28-202ENST00000377348 HSPA9P38646 679 aaKnown RBP13.5□□□□□ -0.25
VPS28-202ENST00000377348 AP1S1P61966 158 aa13.5□□□□□ -0.25
VPS28-202ENST00000377348 SEMG2Q02383 582 aa13.5□□□□□ -0.25
VPS28-202ENST00000377348 PPIDQ08752 370 aaKnown RBP13.5□□□□□ -0.25
VPS28-202ENST00000377348 ITKQ08881 620 aa13.5□□□□□ -0.25
VPS28-202ENST00000377348 AP1B1Q10567 949 aa13.5□□□□□ -0.25
VPS28-202ENST00000377348 ZBTB17Q13105 803 aa13.5□□□□□ -0.25
VPS28-202ENST00000377348 PDK1Q15118 436 aa13.5□□□□□ -0.25
VPS28-202ENST00000377348 PPP2R5EQ16537 467 aa13.5□□□□□ -0.25
VPS28-202ENST00000377348 TTC7BQ86TV6 843 aa13.5□□□□□ -0.25
VPS28-202ENST00000377348 TRIM69Q86WT6 500 aa13.5□□□□□ -0.25
VPS28-202ENST00000377348 CEP76Q8TAP6 659 aa13.5□□□□□ -0.25
VPS28-202ENST00000377348 ANP32BQ92688 251 aaKnown RBP13.5□□□□□ -0.25
VPS28-202ENST00000377348 PDLIM2Q96JY6 352 aa13.5□□□□□ -0.25
VPS28-202ENST00000377348 NUDCD1Q96RS6 583 aa13.5□□□□□ -0.25
VPS28-202ENST00000377348 TUBGCP5Q96RT8 1024 aa13.5□□□□□ -0.25
VPS28-202ENST00000377348 MYOCQ99972 504 aa13.5□□□□□ -0.25
VPS28-202ENST00000377348 EDEM2Q9BV94 578 aa13.5□□□□□ -0.25
VPS28-202ENST00000377348 NUSAP1Q9BXS6 441 aaKnown RBP13.5□□□□□ -0.25
VPS28-202ENST00000377348 ATP13A3Q9H7F0 1226 aa13.5□□□□□ -0.25
VPS28-202ENST00000377348 NOD2Q9HC29 1040 aa13.5□□□□□ -0.25
VPS28-202ENST00000377348 SEPT10Q9P0V9 454 aa13.5□□□□□ -0.25
VPS28-202ENST00000377348 DKK3Q9UBP4 350 aa13.5□□□□□ -0.25
VPS28-202ENST00000377348 CA5BQ9Y2D0 317 aa13.5□□□□□ -0.25
VPS28-202ENST00000377348 PCDHGC4Q9Y5F7 938 aa13.5□□□□□ -0.25
VPS28-202ENST00000377348 PI4KAP42356 2102 aa13.49□□□□□ -0.25
VPS28-202ENST00000377348 TSPAN11A1L157 253 aa13.49□□□□□ -0.25
VPS28-202ENST00000377348 NEMP1O14524 444 aa13.49□□□□□ -0.25
VPS28-202ENST00000377348 TRAFD1O14545 582 aaPredicted RBP13.49□□□□□ -0.25
VPS28-202ENST00000377348 PPP1R12AO14974 1030 aaPredicted RBP13.49□□□□□ -0.25
VPS28-202ENST00000377348 AREL1O15033 823 aa13.49□□□□□ -0.25
VPS28-202ENST00000377348 SLC31A1O15431 190 aa13.49□□□□□ -0.25
VPS28-202ENST00000377348 AP1G1O43747 822 aa13.49□□□□□ -0.25
VPS28-202ENST00000377348 NEBLO76041 1014 aa13.49□□□□□ -0.25
VPS28-202ENST00000377348 JCHAINP01591 159 aa13.49□□□□□ -0.25
VPS28-202ENST00000377348 ENGP17813 658 aa13.49□□□□□ -0.25
VPS28-202ENST00000377348 TGM2P21980 687 aa13.49□□□□□ -0.25
VPS28-202ENST00000377348 XPAP23025 273 aaPredicted RBP13.49□□□□□ -0.25
VPS28-202ENST00000377348 MAPK8P45983 427 aa13.49□□□□□ -0.25
VPS28-202ENST00000377348 CSNK1EP49674 416 aaKnown RBP13.49□□□□□ -0.25
VPS28-202ENST00000377348 COPS2P61201 443 aa13.49□□□□□ -0.25
VPS28-202ENST00000377348 BNC1Q01954 994 aa13.49□□□□□ -0.25
VPS28-202ENST00000377348 DSC2Q02487 901 aa13.49□□□□□ -0.25
VPS28-202ENST00000377348 LMNB2Q03252 620 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms