RNA–Protein interactions for RNA: ENST00000374490.7

HMGCL-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA lyase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCL, Length 1,600 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCL-203ENST00000374490 SIK2Q9H0K1 926 aa14.08□□□□□ -0.15
HMGCL-203ENST00000374490 TRPV6Q9H1D0 765 aa14.08□□□□□ -0.15
HMGCL-203ENST00000374490 ZNF385DQ9H6B1 395 aa14.08□□□□□ -0.15
HMGCL-203ENST00000374490 TREX1Q9NSU2 369 aa14.08□□□□□ -0.15
HMGCL-203ENST00000374490 RBM22Q9NW64 420 aaKnown RBP eCLIP14.08□□□□□ -0.15
HMGCL-203ENST00000374490 MAGED2Q9UNF1 606 aaPredicted RBP14.08□□□□□ -0.15
HMGCL-203ENST00000374490 A0A0U1RQF3 1178 aa14.08□□□□□ -0.16
HMGCL-203ENST00000374490 CASQ2O14958 399 aaPredicted RBP14.08□□□□□ -0.16
HMGCL-203ENST00000374490 INPPL1O15357 1258 aa14.08□□□□□ -0.16
HMGCL-203ENST00000374490 GRID2O43424 1007 aa14.08□□□□□ -0.16
HMGCL-203ENST00000374490 PDE5AO76074 875 aa14.08□□□□□ -0.16
HMGCL-203ENST00000374490 VAPBO95292 243 aa14.08□□□□□ -0.16
HMGCL-203ENST00000374490 SBK3P0C264 359 aa14.08□□□□□ -0.16
HMGCL-203ENST00000374490 TFEBP19484 476 aa14.08□□□□□ -0.16
HMGCL-203ENST00000374490 ATP5F1P24539 256 aaPredicted RBP14.08□□□□□ -0.16
HMGCL-203ENST00000374490 BRCC3P46736 316 aa14.08□□□□□ -0.16
HMGCL-203ENST00000374490 CLCN5P51795 746 aa14.08□□□□□ -0.16
HMGCL-203ENST00000374490 AFF1P51825 1210 aaKnown RBP14.08□□□□□ -0.16
HMGCL-203ENST00000374490 SLC5A3P53794 718 aa14.08□□□□□ -0.16
HMGCL-203ENST00000374490 CYLC2Q14093 348 aaPredicted RBP14.08□□□□□ -0.16
HMGCL-203ENST00000374490 POU6F1Q14863 301 aa14.08□□□□□ -0.16
HMGCL-203ENST00000374490 SHHQ15465 462 aa14.08□□□□□ -0.16
HMGCL-203ENST00000374490 ZFP1Q6P2D0 407 aa14.08□□□□□ -0.16
HMGCL-203ENST00000374490 CD300LGQ6UXG3 332 aa14.08□□□□□ -0.16
HMGCL-203ENST00000374490 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.08□□□□□ -0.16
HMGCL-203ENST00000374490 CENPLQ8N0S6 344 aaPredicted RBP14.08□□□□□ -0.16
HMGCL-203ENST00000374490 SLC25A41Q8N5S1 370 aa14.08□□□□□ -0.16
HMGCL-203ENST00000374490 ACVR1CQ8NER5 493 aa14.08□□□□□ -0.16
HMGCL-203ENST00000374490 OR10T2Q8NGX3 314 aa14.08□□□□□ -0.16
HMGCL-203ENST00000374490 SPATA22Q8NHS9 363 aa14.08□□□□□ -0.16
HMGCL-203ENST00000374490 PIP4K2CQ8TBX8 421 aa14.08□□□□□ -0.16
HMGCL-203ENST00000374490 UCMAQ8WVF2 138 aa14.08□□□□□ -0.16
HMGCL-203ENST00000374490 ELMO2Q96JJ3 720 aa14.08□□□□□ -0.16
HMGCL-203ENST00000374490 C1orf74Q96LT6 269 aa14.08□□□□□ -0.16
HMGCL-203ENST00000374490 ADAM2Q99965 735 aa14.08□□□□□ -0.16
HMGCL-203ENST00000374490 KLHL4Q9C0H6 718 aa14.08□□□□□ -0.16
HMGCL-203ENST00000374490 SLC25A51Q9H1U9 297 aa14.08□□□□□ -0.16
HMGCL-203ENST00000374490 CYP4F11Q9HBI6 524 aa14.08□□□□□ -0.16
HMGCL-203ENST00000374490 ARNT2Q9HBZ2 717 aa14.08□□□□□ -0.16
HMGCL-203ENST00000374490 VPS45Q9NRW7 570 aa14.08□□□□□ -0.16
HMGCL-203ENST00000374490 TMLHEQ9NVH6 421 aa14.08□□□□□ -0.16
HMGCL-203ENST00000374490 CLIC5Q9NZA1 410 aa14.08□□□□□ -0.16
HMGCL-203ENST00000374490 NCKIPSDQ9NZQ3 722 aa14.08□□□□□ -0.16
HMGCL-203ENST00000374490 HACD3Q9P035 362 aa14.08□□□□□ -0.16
HMGCL-203ENST00000374490 XPR1Q9UBH6 696 aa14.08□□□□□ -0.16
HMGCL-203ENST00000374490 STK39Q9UEW8 545 aa14.08□□□□□ -0.16
HMGCL-203ENST00000374490 FBXO5Q9UKT4 447 aa14.08□□□□□ -0.16
HMGCL-203ENST00000374490 FNDC1Q4ZHG4 1894 aaPredicted RBP14.07□□□□□ -0.16
HMGCL-203ENST00000374490 LOC100653049A0A140TA62 436 aa14.07□□□□□ -0.16
HMGCL-203ENST00000374490 KCNU1A8MYU2 1149 aa14.07□□□□□ -0.16
HMGCL-203ENST00000374490 E9PAM4 449 aa14.07□□□□□ -0.16
HMGCL-203ENST00000374490 DLX3O60479 287 aa14.07□□□□□ -0.16
HMGCL-203ENST00000374490 TADA2AO75478 443 aa14.07□□□□□ -0.16
HMGCL-203ENST00000374490 KRT34O76011 436 aa14.07□□□□□ -0.16
HMGCL-203ENST00000374490 PAPSS2O95340 614 aaPredicted RBP14.07□□□□□ -0.16
HMGCL-203ENST00000374490 HLA-DQB2P05538 268 aa14.07□□□□□ -0.16
HMGCL-203ENST00000374490 CHRNGP07510 517 aa14.07□□□□□ -0.16
HMGCL-203ENST00000374490 GABRB3P28472 473 aa14.07□□□□□ -0.16
HMGCL-203ENST00000374490 SLC1A2P43004 574 aa14.07□□□□□ -0.16
HMGCL-203ENST00000374490 TUBP50607 506 aa14.07□□□□□ -0.16
HMGCL-203ENST00000374490 NDST2P52849 883 aa14.07□□□□□ -0.16
HMGCL-203ENST00000374490 NAGLUP54802 743 aa14.07□□□□□ -0.16
HMGCL-203ENST00000374490 MPP1Q00013 466 aa14.07□□□□□ -0.16
HMGCL-203ENST00000374490 NSUN2Q08J23 767 aaKnown RBP eCLIP14.07□□□□□ -0.16
HMGCL-203ENST00000374490 RFTN1Q14699 578 aaPredicted RBP14.07□□□□□ -0.16
HMGCL-203ENST00000374490 LSM12Q3MHD2 195 aaKnown RBP14.07□□□□□ -0.16
HMGCL-203ENST00000374490 ESRP1Q6NXG1 681 aaKnown RBP14.07□□□□□ -0.16
HMGCL-203ENST00000374490 MSANTD2Q6P1R3 559 aa14.07□□□□□ -0.16
HMGCL-203ENST00000374490 KLC3Q6P597 504 aa14.07□□□□□ -0.16
HMGCL-203ENST00000374490 RANBP10Q6VN20 620 aa14.07□□□□□ -0.16
HMGCL-203ENST00000374490 BNC2Q6ZN30 1099 aaPredicted RBP14.07□□□□□ -0.16
HMGCL-203ENST00000374490 ARHGAP36Q6ZRI8 547 aa14.07□□□□□ -0.16
HMGCL-203ENST00000374490 SNX32Q86XE0 403 aa14.07□□□□□ -0.16
HMGCL-203ENST00000374490 PDSS2Q86YH6 399 aa14.07□□□□□ -0.16
HMGCL-203ENST00000374490 TMEM126BQ8IUX1 230 aa14.07□□□□□ -0.16
HMGCL-203ENST00000374490 DCP1BQ8IZD4 617 aaKnown RBP14.07□□□□□ -0.16
HMGCL-203ENST00000374490 GPR78Q96P69 363 aa14.07□□□□□ -0.16
HMGCL-203ENST00000374490 LENG8Q96PV6 779 aaPredicted RBP14.07□□□□□ -0.16
HMGCL-203ENST00000374490 PAAF1Q9BRP4 392 aa14.07□□□□□ -0.16
HMGCL-203ENST00000374490 MRPL40Q9NQ50 206 aaKnown RBP14.07□□□□□ -0.16
HMGCL-203ENST00000374490 OSER1Q9NX31 292 aa14.07□□□□□ -0.16
HMGCL-203ENST00000374490 C6orf203Q9P0P8 240 aaPredicted RBP14.07□□□□□ -0.16
HMGCL-203ENST00000374490 IPO11Q9UI26 975 aaKnown RBP14.07□□□□□ -0.16
HMGCL-203ENST00000374490 GOLGA8TH3BQL2 631 aa14.06□□□□□ -0.16
HMGCL-203ENST00000374490 TNFRSF10BO14763 440 aa14.06□□□□□ -0.16
HMGCL-203ENST00000374490 MGEA5O60502 916 aa14.06□□□□□ -0.16
HMGCL-203ENST00000374490 MT-CYBP00156 380 aaPredicted RBP14.06□□□□□ -0.16
HMGCL-203ENST00000374490 POMCP01189 267 aa14.06□□□□□ -0.16
HMGCL-203ENST00000374490 SAT1P21673 171 aa14.06□□□□□ -0.16
HMGCL-203ENST00000374490 GRIK1P39086 918 aa14.06□□□□□ -0.16
HMGCL-203ENST00000374490 RENBPP51606 427 aa14.06□□□□□ -0.16
HMGCL-203ENST00000374490 IRX1P78414 480 aaPredicted RBP14.06□□□□□ -0.16
HMGCL-203ENST00000374490 TLE2Q04725 743 aa14.06□□□□□ -0.16
HMGCL-203ENST00000374490 MSLNQ13421 630 aaPredicted RBP14.06□□□□□ -0.16
HMGCL-203ENST00000374490 MAPRE2Q15555 327 aa14.06□□□□□ -0.16
HMGCL-203ENST00000374490 PSMD5Q16401 504 aa14.06□□□□□ -0.16
HMGCL-203ENST00000374490 C9orf50Q5SZB4 431 aa14.06□□□□□ -0.16
HMGCL-203ENST00000374490 ACBD5Q5T8D3 534 aaPredicted RBP14.06□□□□□ -0.16
HMGCL-203ENST00000374490 AGAP9Q5VTM2 703 aa14.06□□□□□ -0.16
HMGCL-203ENST00000374490 ZNF470Q6ECI4 717 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms