RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 NTAN1Q96AB6 310 aa16.54■□□□□ 0.24
SDC4-201ENST00000372733 PPWD1Q96BP3 646 aaKnown RBP16.54■□□□□ 0.24
SDC4-201ENST00000372733 HSPBAP1Q96EW2 488 aa16.54■□□□□ 0.24
SDC4-201ENST00000372733 FAM210AQ96ND0 272 aa16.54■□□□□ 0.24
SDC4-201ENST00000372733 OSMRQ99650 979 aa16.54■□□□□ 0.24
SDC4-201ENST00000372733 TUT1Q9H6E5 874 aaKnown RBP16.54■□□□□ 0.24
SDC4-201ENST00000372733 SPAG4Q9NPE6 437 aa16.54■□□□□ 0.24
SDC4-201ENST00000372733 GDAP2Q9NXN4 497 aa16.54■□□□□ 0.24
SDC4-201ENST00000372733 CSADQ9Y600 493 aa16.54■□□□□ 0.24
SDC4-201ENST00000372733 RAD54BQ9Y620 910 aa16.54■□□□□ 0.24
SDC4-201ENST00000372733 COL1A2P08123 1366 aa16.53■□□□□ 0.24
SDC4-201ENST00000372733 H0YJX3 145 aa16.53■□□□□ 0.24
SDC4-201ENST00000372733 MRASO14807 208 aa16.53■□□□□ 0.24
SDC4-201ENST00000372733 UBDO15205 165 aa16.53■□□□□ 0.24
SDC4-201ENST00000372733 HUS1O60921 280 aa16.53■□□□□ 0.24
SDC4-201ENST00000372733 YBX3P16989 372 aaKnown RBP eCLIP16.53■□□□□ 0.24
SDC4-201ENST00000372733 SLC7A1P30825 629 aa16.53■□□□□ 0.24
SDC4-201ENST00000372733 TAF6P49848 677 aa16.53■□□□□ 0.24
SDC4-201ENST00000372733 PRAMEP78395 509 aa16.53■□□□□ 0.24
SDC4-201ENST00000372733 SCAPQ12770 1279 aa16.53■□□□□ 0.24
SDC4-201ENST00000372733 CSHL1Q14406 222 aa16.53■□□□□ 0.24
SDC4-201ENST00000372733 PRPSAP1Q14558 356 aa16.53■□□□□ 0.24
SDC4-201ENST00000372733 UGP2Q16851 508 aa16.53■□□□□ 0.24
SDC4-201ENST00000372733 DUS1LQ6P1R4 473 aaKnown RBP16.53■□□□□ 0.24
SDC4-201ENST00000372733 FAM47BQ8NA70 645 aa16.53■□□□□ 0.24
SDC4-201ENST00000372733 ZNF419Q96HQ0 510 aaPredicted RBP16.53■□□□□ 0.24
SDC4-201ENST00000372733 RNF39Q9H2S5 420 aa16.53■□□□□ 0.24
SDC4-201ENST00000372733 CHST12Q9NRB3 414 aa16.53■□□□□ 0.24
SDC4-201ENST00000372733 CHCHD3Q9NX63 227 aaKnown RBP16.53■□□□□ 0.24
SDC4-201ENST00000372733 DUS2Q9NX74 493 aaKnown RBP16.53■□□□□ 0.24
SDC4-201ENST00000372733 FBXW11Q9UKB1 542 aa16.53■□□□□ 0.24
SDC4-201ENST00000372733 MRPL42Q9Y6G3 142 aaKnown RBP16.53■□□□□ 0.24
SDC4-201ENST00000372733 SOCS2O14508 198 aa16.53■□□□□ 0.24
SDC4-201ENST00000372733 NCAM1P13591 858 aa16.53■□□□□ 0.24
SDC4-201ENST00000372733 ATP5F1P24539 256 aaPredicted RBP16.53■□□□□ 0.24
SDC4-201ENST00000372733 IGFBP6P24592 240 aaPredicted RBP16.53■□□□□ 0.24
SDC4-201ENST00000372733 BAG6P46379 1132 aa16.53■□□□□ 0.24
SDC4-201ENST00000372733 ZNF470Q6ECI4 717 aa16.53■□□□□ 0.24
SDC4-201ENST00000372733 POTEHQ6S545 545 aa16.53■□□□□ 0.24
SDC4-201ENST00000372733 DEFB132Q7Z7B7 95 aa16.53■□□□□ 0.24
SDC4-201ENST00000372733 CNTN4Q8IWV2 1026 aa16.53■□□□□ 0.24
SDC4-201ENST00000372733 TOP1MTQ969P6 601 aa16.53■□□□□ 0.24
SDC4-201ENST00000372733 MRPL57Q9BQC6 102 aaKnown RBP16.53■□□□□ 0.24
SDC4-201ENST00000372733 A0A0G2JLL6 359 aaPredicted RBP16.52■□□□□ 0.24
SDC4-201ENST00000372733 SAC3D1A6NKF1 404 aa16.52■□□□□ 0.24
SDC4-201ENST00000372733 STT3AP46977 705 aa16.52■□□□□ 0.24
SDC4-201ENST00000372733 ARCN1P48444 511 aaKnown RBP16.52■□□□□ 0.24
SDC4-201ENST00000372733 SLC7A2P52569 658 aa16.52■□□□□ 0.24
SDC4-201ENST00000372733 PCID2Q5JVF3 399 aa16.52■□□□□ 0.24
SDC4-201ENST00000372733 RBM20Q5T481 1227 aaKnown RBP16.52■□□□□ 0.24
SDC4-201ENST00000372733 NOTUMQ6P988 496 aa16.52■□□□□ 0.24
SDC4-201ENST00000372733 KLHL35Q6PF15 583 aa16.52■□□□□ 0.24
SDC4-201ENST00000372733 PRRT2Q7Z6L0 340 aaPredicted RBP16.52■□□□□ 0.24
SDC4-201ENST00000372733 SNRNP27Q8WVK2 155 aaKnown RBP16.52■□□□□ 0.24
SDC4-201ENST00000372733 EDEM1Q92611 657 aa16.52■□□□□ 0.24
SDC4-201ENST00000372733 SLC9A7Q96T83 725 aa16.52■□□□□ 0.24
SDC4-201ENST00000372733 TBL1YQ9BQ87 522 aa16.52■□□□□ 0.24
SDC4-201ENST00000372733 FICDQ9BVA6 458 aa16.52■□□□□ 0.24
SDC4-201ENST00000372733 ADAMTS10Q9H324 1103 aa16.52■□□□□ 0.24
SDC4-201ENST00000372733 CD300AQ9UGN4 299 aa16.52■□□□□ 0.24
SDC4-201ENST00000372733 IPO11Q9UI26 975 aaKnown RBP16.52■□□□□ 0.24
SDC4-201ENST00000372733 SARDHQ9UL12 918 aa16.52■□□□□ 0.24
SDC4-201ENST00000372733 NRCAMQ92823 1304 aa16.52■□□□□ 0.24
SDC4-201ENST00000372733 SRP72O76094 671 aaKnown RBP16.52■□□□□ 0.23
SDC4-201ENST00000372733 LRIG2O94898 1065 aa16.52■□□□□ 0.23
SDC4-201ENST00000372733 CD4P01730 458 aa16.52■□□□□ 0.23
SDC4-201ENST00000372733 ATP6V1B2P21281 511 aa16.52■□□□□ 0.23
SDC4-201ENST00000372733 YWHAQP27348 245 aa16.52■□□□□ 0.23
SDC4-201ENST00000372733 LRPAP1P30533 357 aa16.52■□□□□ 0.23
SDC4-201ENST00000372733 ADCYAP1R1P41586 468 aa16.52■□□□□ 0.23
SDC4-201ENST00000372733 DAOAP59103 153 aa16.52■□□□□ 0.23
SDC4-201ENST00000372733 MAPRE2Q15555 327 aa16.52■□□□□ 0.23
SDC4-201ENST00000372733 KIAA0319Q5VV43 1072 aa16.52■□□□□ 0.23
SDC4-201ENST00000372733 TAPT1Q6NXT6 567 aa16.52■□□□□ 0.23
SDC4-201ENST00000372733 ZBTB49Q6ZSB9 765 aa16.52■□□□□ 0.23
SDC4-201ENST00000372733 PNPLA1Q8N8W4 532 aa16.52■□□□□ 0.23
SDC4-201ENST00000372733 PPTC7Q8NI37 304 aa16.52■□□□□ 0.23
SDC4-201ENST00000372733 DPF3Q92784 378 aa16.52■□□□□ 0.23
SDC4-201ENST00000372733 UHRF1Q96T88 793 aaPredicted RBP16.52■□□□□ 0.23
SDC4-201ENST00000372733 ANKRD60Q9BZ19 345 aa16.52■□□□□ 0.23
SDC4-201ENST00000372733 MRPL40Q9NQ50 206 aaKnown RBP16.52■□□□□ 0.23
SDC4-201ENST00000372733 IGSF5Q9NSI5 407 aa16.52■□□□□ 0.23
SDC4-201ENST00000372733 A8MT66 165 aa16.51■□□□□ 0.23
SDC4-201ENST00000372733 SNRPB2P08579 225 aaKnown RBP16.51■□□□□ 0.23
SDC4-201ENST00000372733 GNAO1P09471 354 aa16.51■□□□□ 0.23
SDC4-201ENST00000372733 KDELC2Q7Z4H8 507 aa16.51■□□□□ 0.23
SDC4-201ENST00000372733 LINC00523Q86TU6 105 aa16.51■□□□□ 0.23
SDC4-201ENST00000372733 CUZD1Q86UP6 607 aa16.51■□□□□ 0.23
SDC4-201ENST00000372733 RIN3Q8TB24 985 aa16.51■□□□□ 0.23
SDC4-201ENST00000372733 KCTD13Q8WZ19 329 aa16.51■□□□□ 0.23
SDC4-201ENST00000372733 PBXIP1Q96AQ6 731 aa16.51■□□□□ 0.23
SDC4-201ENST00000372733 VAT1Q99536 393 aa16.51■□□□□ 0.23
SDC4-201ENST00000372733 BRD8Q9H0E9 1235 aa16.51■□□□□ 0.23
SDC4-201ENST00000372733 MEAF6Q9HAF1 191 aa16.51■□□□□ 0.23
SDC4-201ENST00000372733 OR12D3Q9UGF7 316 aa16.51■□□□□ 0.23
SDC4-201ENST00000372733 SFMBT1Q9UHJ3 866 aa16.51■□□□□ 0.23
SDC4-201ENST00000372733 MYLKQ15746 1914 aa16.51■□□□□ 0.23
SDC4-201ENST00000372733 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.51■□□□□ 0.23
SDC4-201ENST00000372733 ATP6AP2A0A1C7CYW4 349 aa16.51■□□□□ 0.23
SDC4-201ENST00000372733 DFFAO00273 331 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms