RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 OR13J1Q8NGT2 312 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 LMLNQ96KR4 655 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 SAMD11Q96NU1 681 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 SRPK1Q96SB4 655 aaKnown RBP13.92□□□□□ -0.18
PTPRF-202ENST00000372405 TDP1Q9NUW8 608 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 PCMTD2Q9NV79 361 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 MKS1Q9NXB0 559 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 LHX3Q9UBR4 397 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 GGT7Q9UJ14 662 aa13.92□□□□□ -0.18
PTPRF-202ENST00000372405 HEATR9A2RTY3 570 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 MROH6A6NGR9 719 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 K7ERQ8 282 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 TPP1O14773 563 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 INSIG1O15503 277 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 LDB2O43679 373 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 XYLBO75191 536 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 PRLP01236 227 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 DHRS4L1P0CG22 281 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 GABRB3P28472 473 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 CD70P32970 193 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 LMAN2Q12907 356 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 SLC14A2Q15849 920 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 TSTD2Q5T7W7 516 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 GRTP1Q5TC63 336 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 PDE12Q6L8Q7 609 aaKnown RBP13.91□□□□□ -0.18
PTPRF-202ENST00000372405 ING5Q8WYH8 240 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 ATXN7L3BQ96GX2 97 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 FAM111AQ96PZ2 611 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 PBX4Q9BYU1 374 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 FGFR1OP2Q9NVK5 253 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 ZDHHC7Q9NXF8 308 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 INTS6Q9UL03 887 aaKnown RBP13.91□□□□□ -0.18
PTPRF-202ENST00000372405 KCTD3Q9Y597 815 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 COPEO14579 308 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 VIMP08670 466 aaKnown RBP13.91□□□□□ -0.18
PTPRF-202ENST00000372405 CEBPBP17676 345 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 HLA-DPA1P20036 260 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 GMPRP36959 345 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 LIMK2P53671 638 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 DNAJC3Q13217 504 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 PDE1CQ14123 709 aaPredicted RBP13.91□□□□□ -0.18
PTPRF-202ENST00000372405 CBX2Q14781 532 aaPredicted RBP13.91□□□□□ -0.18
PTPRF-202ENST00000372405 ZNF77Q15935 545 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 PDK4Q16654 411 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 ARHGAP15Q53QZ3 475 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 INO80DQ53TQ3 878 aaPredicted RBP13.91□□□□□ -0.18
PTPRF-202ENST00000372405 KIAA0930Q6ICG6 404 aaPredicted RBP13.91□□□□□ -0.18
PTPRF-202ENST00000372405 FSTL4Q6MZW2 842 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 TMEM25Q86YD3 366 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 DENND6AQ8IWF6 608 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 NDUFAF2Q8N183 169 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 DCLK2Q8N568 766 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 C12orf76Q8N812 135 aaPredicted RBP13.91□□□□□ -0.18
PTPRF-202ENST00000372405 LEMD2Q8NC56 503 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 VN1R2Q8NFZ6 395 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 FIBINQ8TAL6 211 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 ISL2Q96A47 359 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 IFT43Q96FT9 208 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 NUDCD1Q96RS6 583 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 SLC13A1Q9BZW2 595 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 TXNDC16Q9P2K2 825 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 CHKBQ9Y259 395 aa13.91□□□□□ -0.18
PTPRF-202ENST00000372405 MTO1Q9Y2Z2 717 aaKnown RBP13.91□□□□□ -0.18
PTPRF-202ENST00000372405 FCF1Q9Y324 198 aaKnown RBP13.91□□□□□ -0.18
PTPRF-202ENST00000372405 NUP210Q8TEM1 1887 aaPredicted RBP13.9□□□□□ -0.18
PTPRF-202ENST00000372405 EPOPA6NHQ4 379 aa13.9□□□□□ -0.18
PTPRF-202ENST00000372405 CCL22O00626 93 aa13.9□□□□□ -0.18
PTPRF-202ENST00000372405 SMAD6O43541 496 aaKnown RBP13.9□□□□□ -0.18
PTPRF-202ENST00000372405 SIN3BO75182 1162 aa13.9□□□□□ -0.18
PTPRF-202ENST00000372405 FGF1P05230 155 aa13.9□□□□□ -0.18
PTPRF-202ENST00000372405 PDHA1P08559 390 aa13.9□□□□□ -0.18
PTPRF-202ENST00000372405 PIRTP0C851 137 aa13.9□□□□□ -0.18
PTPRF-202ENST00000372405 MAGEA12P43365 314 aa13.9□□□□□ -0.18
PTPRF-202ENST00000372405 ARSDP51689 593 aa13.9□□□□□ -0.18
PTPRF-202ENST00000372405 HHATQ5VTY9 493 aa13.9□□□□□ -0.18
PTPRF-202ENST00000372405 ARMC3Q5W041 872 aa13.9□□□□□ -0.18
PTPRF-202ENST00000372405 CPLX4Q7Z7G2 160 aa13.9□□□□□ -0.18
PTPRF-202ENST00000372405 ITFG1Q8TB96 612 aa13.9□□□□□ -0.18
PTPRF-202ENST00000372405 SMIM14Q96QK8 99 aa13.9□□□□□ -0.18
PTPRF-202ENST00000372405 TDRD1Q9BXT4 1180 aaKnown RBP13.9□□□□□ -0.18
PTPRF-202ENST00000372405 LINC00597Q9H2U6 94 aa13.9□□□□□ -0.18
PTPRF-202ENST00000372405 SCUBE2Q9NQ36 999 aa13.9□□□□□ -0.18
PTPRF-202ENST00000372405 PLLPQ9Y342 182 aa13.9□□□□□ -0.18
PTPRF-202ENST00000372405 PCDHGC4Q9Y5F7 938 aa13.9□□□□□ -0.18
PTPRF-202ENST00000372405 PAPSS2O95340 614 aaPredicted RBP13.89□□□□□ -0.19
PTPRF-202ENST00000372405 NDST3O95803 873 aa13.89□□□□□ -0.19
PTPRF-202ENST00000372405 AHSGP02765 367 aa13.89□□□□□ -0.19
PTPRF-202ENST00000372405 POU2F2P09086 479 aa13.89□□□□□ -0.19
PTPRF-202ENST00000372405 HLA-FP30511 346 aa13.89□□□□□ -0.19
PTPRF-202ENST00000372405 SPRP35270 261 aaPredicted RBP13.89□□□□□ -0.19
PTPRF-202ENST00000372405 CSE1LP55060 971 aaKnown RBP13.89□□□□□ -0.19
PTPRF-202ENST00000372405 HNRNPH2P55795 449 aaKnown RBP13.89□□□□□ -0.19
PTPRF-202ENST00000372405 MPP1Q00013 466 aa13.89□□□□□ -0.19
PTPRF-202ENST00000372405 CTBP1Q13363 440 aa13.89□□□□□ -0.19
PTPRF-202ENST00000372405 PTPRCAPQ14761 206 aa13.89□□□□□ -0.19
PTPRF-202ENST00000372405 ZKSCAN8Q15776 578 aaPredicted RBP13.89□□□□□ -0.19
PTPRF-202ENST00000372405 PLEKHG6Q3KR16 790 aa13.89□□□□□ -0.19
PTPRF-202ENST00000372405 PPM1JQ5JR12 505 aa13.89□□□□□ -0.19
PTPRF-202ENST00000372405 ASTLQ6HA08 431 aaPredicted RBP13.89□□□□□ -0.19
PTPRF-202ENST00000372405 CGB2Q6NT52 195 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms