RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 CEBPBP17676 345 aa13.33□□□□□ -0.28
SQSTM1-201ENST00000360718 RENBPP51606 427 aa13.33□□□□□ -0.28
SQSTM1-201ENST00000360718 MTM1Q13496 603 aa13.33□□□□□ -0.28
SQSTM1-201ENST00000360718 CBX2Q14781 532 aaPredicted RBP13.33□□□□□ -0.28
SQSTM1-201ENST00000360718 CMTM8Q8IZV2 173 aa13.33□□□□□ -0.28
SQSTM1-201ENST00000360718 PPM1NQ8N819 430 aa13.33□□□□□ -0.28
SQSTM1-201ENST00000360718 PTPRN2Q92932 1015 aa13.33□□□□□ -0.28
SQSTM1-201ENST00000360718 MCUR1Q96AQ8 359 aa13.33□□□□□ -0.28
SQSTM1-201ENST00000360718 SKA1Q96BD8 255 aa13.33□□□□□ -0.28
SQSTM1-201ENST00000360718 MRPL38Q96DV4 380 aaKnown RBP13.33□□□□□ -0.28
SQSTM1-201ENST00000360718 PTCD3Q96EY7 689 aaKnown RBP13.33□□□□□ -0.28
SQSTM1-201ENST00000360718 CFAP36Q96G28 342 aa13.33□□□□□ -0.28
SQSTM1-201ENST00000360718 TEKT5Q96M29 485 aa13.33□□□□□ -0.28
SQSTM1-201ENST00000360718 PPP1R2P1Q96PQ5 205 aa13.33□□□□□ -0.28
SQSTM1-201ENST00000360718 MAGEH1Q9H213 219 aa13.33□□□□□ -0.28
SQSTM1-201ENST00000360718 GBA3Q9H227 469 aa13.33□□□□□ -0.28
SQSTM1-201ENST00000360718 TASP1Q9H6P5 420 aa13.33□□□□□ -0.28
SQSTM1-201ENST00000360718 XAB2Q9HCS7 855 aaKnown RBP13.33□□□□□ -0.28
SQSTM1-201ENST00000360718 EIF2B3Q9NR50 452 aaKnown RBP13.33□□□□□ -0.28
SQSTM1-201ENST00000360718 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.33□□□□□ -0.281e-6■■□□□ 13.2
SQSTM1-201ENST00000360718 TRIOBPQ9H2D6 2365 aa13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 TRIM49D1C9J1S8 452 aa13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 LEFTY2O00292 366 aa13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 GFRA2O00451 464 aa13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 GSC2O15499 205 aa13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 PRAMEF12O95522 483 aa13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 DLDP09622 509 aaKnown RBP13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 BGNP21810 368 aa13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 FAM91A1Q658Y4 838 aa13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 HTR3DQ70Z44 454 aa13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 BBS7Q8IWZ6 715 aa13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 HJURPQ8NCD3 748 aaPredicted RBP13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 ITFG1Q8TB96 612 aa13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 USP33Q8TEY7 942 aa13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 FATE1Q969F0 183 aa13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 SRPK1Q96SB4 655 aaKnown RBP13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 GORASP1Q9BQQ3 440 aa13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 APOL5Q9BWW9 433 aa13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 C12orf65Q9H3J6 166 aaKnown RBP13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 MMADHCQ9H3L0 296 aaPredicted RBP13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 ARHGAP26Q9UNA1 814 aa13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 A0A0D9SEW6 157 aa13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 ERI2A8K979 691 aaKnown RBP13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 ATP5BP06576 529 aaKnown RBP13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 RHOCP08134 193 aa13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 PRKCHP24723 683 aa13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 SERPINB3P29508 390 aa13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 CD68P34810 354 aaPredicted RBP13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 ACVRL1P37023 503 aa13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 HYAL1Q12794 435 aa13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 BLMHQ13867 455 aa13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 HNRNPDQ14103 355 aaKnown RBP13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 CCDC6Q16204 474 aa13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 SETD3Q86TU7 594 aaPredicted RBP13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 CNTD1Q8N815 330 aa13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 PDCD7Q8N8D1 485 aaKnown RBP13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 RAB3IL1Q8TBN0 382 aa13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 SMG7Q92540 1137 aaKnown RBP13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 USP13Q92995 863 aaPredicted RBP13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 TMA16Q96EY4 203 aaKnown RBP13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 CDCA3Q99618 268 aaPredicted RBP13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 IL12RB2Q99665 862 aa13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 CADM1Q9BY67 442 aaKnown RBP13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 KCNK13Q9HB14 408 aa13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 ARL8BQ9NVJ2 186 aa13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 RBM22Q9NW64 420 aaKnown RBP eCLIP13.32□□□□□ -0.282e-8■■■■■ 38.8
SQSTM1-201ENST00000360718 MKS1Q9NXB0 559 aa13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 KCNK4Q9NYG8 393 aa13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 TTLL3Q9Y4R7 772 aa13.32□□□□□ -0.28
SQSTM1-201ENST00000360718 J3KR12 359 aa13.31□□□□□ -0.28
SQSTM1-201ENST00000360718 PSMD3O43242 534 aa13.31□□□□□ -0.28
SQSTM1-201ENST00000360718 PEX11BO96011 259 aa13.31□□□□□ -0.28
SQSTM1-201ENST00000360718 NFKB1P19838 968 aa13.31□□□□□ -0.28
SQSTM1-201ENST00000360718 ATP6V1C1P21283 382 aa13.31□□□□□ -0.28
SQSTM1-201ENST00000360718 GCKP35557 465 aa13.31□□□□□ -0.28
SQSTM1-201ENST00000360718 ETFBP38117 255 aa13.31□□□□□ -0.28
SQSTM1-201ENST00000360718 GNA12Q03113 381 aa13.31□□□□□ -0.28
SQSTM1-201ENST00000360718 CDK18Q07002 472 aa13.31□□□□□ -0.28
SQSTM1-201ENST00000360718 IL10RBQ08334 325 aa13.31□□□□□ -0.28
SQSTM1-201ENST00000360718 SERINC3Q13530 473 aa13.31□□□□□ -0.28
SQSTM1-201ENST00000360718 IL31Q6EBC2 164 aa13.31□□□□□ -0.28
SQSTM1-201ENST00000360718 CCDC117Q8IWD4 279 aaPredicted RBP13.31□□□□□ -0.28
SQSTM1-201ENST00000360718 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.31□□□□□ -0.28
SQSTM1-201ENST00000360718 SH3RF2Q8TEC5 729 aa13.31□□□□□ -0.28
SQSTM1-201ENST00000360718 BHMTQ93088 406 aa13.31□□□□□ -0.28
SQSTM1-201ENST00000360718 PABPC5Q96DU9 382 aaKnown RBP13.31□□□□□ -0.28
SQSTM1-201ENST00000360718 OXNAD1Q96HP4 312 aaPredicted RBP13.31□□□□□ -0.28
SQSTM1-201ENST00000360718 C7orf26Q96N11 449 aa13.31□□□□□ -0.28
SQSTM1-201ENST00000360718 PLLPQ9Y342 182 aa13.31□□□□□ -0.28
SQSTM1-201ENST00000360718 MRPS23Q9Y3D9 190 aaKnown RBP13.31□□□□□ -0.28
SQSTM1-201ENST00000360718 ANKRD36A6QL64 1941 aa13.31□□□□□ -0.28
SQSTM1-201ENST00000360718 ILVBLA1L0T0 632 aa13.3□□□□□ -0.28
SQSTM1-201ENST00000360718 TBL1XO60907 577 aa13.3□□□□□ -0.28
SQSTM1-201ENST00000360718 ENTPD5O75356 428 aa13.3□□□□□ -0.28
SQSTM1-201ENST00000360718 ANXA9O76027 345 aa13.3□□□□□ -0.28
SQSTM1-201ENST00000360718 PAPLNO95428 1278 aa13.3□□□□□ -0.28
SQSTM1-201ENST00000360718 MYL2P10916 166 aa13.3□□□□□ -0.28
SQSTM1-201ENST00000360718 GM2AP17900 193 aa13.3□□□□□ -0.28
SQSTM1-201ENST00000360718 PTDSS1P48651 473 aaKnown RBP13.3□□□□□ -0.28
SQSTM1-201ENST00000360718 SERPINB9P50453 376 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms