RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 RAI2Q9Y5P3 530 aa20.1■□□□□ 0.81
CLN3-205ENST00000359984 DYNC1LI1Q9Y6G9 523 aaKnown RBP20.1■□□□□ 0.81
CLN3-205ENST00000359984 MIA3Q5JRA6 1907 aa20.1■□□□□ 0.81
CLN3-205ENST00000359984 SPECC1L-ADORA2AF8WAN1 911 aa20.09■□□□□ 0.81
CLN3-205ENST00000359984 AP3B1O00203 1094 aa20.09■□□□□ 0.81
CLN3-205ENST00000359984 RIPK2O43353 540 aa20.09■□□□□ 0.81
CLN3-205ENST00000359984 BNIP3LO60238 219 aa20.09■□□□□ 0.81
CLN3-205ENST00000359984 EPOP01588 193 aa20.09■□□□□ 0.81
CLN3-205ENST00000359984 APODP05090 189 aa20.09■□□□□ 0.81
CLN3-205ENST00000359984 ATXN1LP0C7T5 689 aaKnown RBP20.09■□□□□ 0.81
CLN3-205ENST00000359984 GKP32189 559 aa20.09■□□□□ 0.81
CLN3-205ENST00000359984 SLC1A5Q15758 541 aa20.09■□□□□ 0.81
CLN3-205ENST00000359984 TRIB3Q96RU7 358 aa20.09■□□□□ 0.81
CLN3-205ENST00000359984 TDRD1Q9BXT4 1180 aaKnown RBP20.09■□□□□ 0.81
CLN3-205ENST00000359984 SYBUQ9NX95 663 aa20.09■□□□□ 0.81
CLN3-205ENST00000359984 BFARQ9NZS9 450 aa20.09■□□□□ 0.81
CLN3-205ENST00000359984 CHKBQ9Y259 395 aa20.09■□□□□ 0.81
CLN3-205ENST00000359984 ANTXRLA6NF34 631 aa20.09■□□□□ 0.81
CLN3-205ENST00000359984 LOC730098B7Z3J9 87 aa20.09■□□□□ 0.81
CLN3-205ENST00000359984 ACSL3O95573 720 aa20.09■□□□□ 0.81
CLN3-205ENST00000359984 CTHP32929 405 aa20.09■□□□□ 0.81
CLN3-205ENST00000359984 NPY2RP49146 381 aa20.09■□□□□ 0.81
CLN3-205ENST00000359984 ST8SIA6P61647 398 aa20.09■□□□□ 0.81
CLN3-205ENST00000359984 TRAF2Q12933 501 aa20.09■□□□□ 0.81
CLN3-205ENST00000359984 MYLK3Q32MK0 819 aa20.09■□□□□ 0.81
CLN3-205ENST00000359984 SIRPB2Q5JXA9 342 aa20.09■□□□□ 0.81
CLN3-205ENST00000359984 TXNDC11Q6PKC3 985 aa20.09■□□□□ 0.81
CLN3-205ENST00000359984 DPY19L3Q6ZPD9 716 aa20.09■□□□□ 0.81
CLN3-205ENST00000359984 RYBPQ8N488 228 aaPredicted RBP20.09■□□□□ 0.81
CLN3-205ENST00000359984 DNASE1L2Q92874 299 aa20.09■□□□□ 0.81
CLN3-205ENST00000359984 VOPP1Q96AW1 172 aa20.09■□□□□ 0.81
CLN3-205ENST00000359984 EBNA1BP2Q99848 306 aaKnown RBP20.09■□□□□ 0.81
CLN3-205ENST00000359984 P2RY13Q9BPV8 354 aa20.09■□□□□ 0.81
CLN3-205ENST00000359984 LRRC4CQ9HCJ2 640 aa20.09■□□□□ 0.81
CLN3-205ENST00000359984 HEBP1Q9NRV9 189 aa20.09■□□□□ 0.81
CLN3-205ENST00000359984 HCN2Q9UL51 889 aa20.09■□□□□ 0.81
CLN3-205ENST00000359984 MAD1L1Q9Y6D9 718 aa20.09■□□□□ 0.81
CLN3-205ENST00000359984 NARSO43776 548 aaKnown RBP20.08■□□□□ 0.81
CLN3-205ENST00000359984 CPP00450 1065 aa20.08■□□□□ 0.81
CLN3-205ENST00000359984 PRLP01236 227 aa20.08■□□□□ 0.81
CLN3-205ENST00000359984 MAPK8P45983 427 aa20.08■□□□□ 0.81
CLN3-205ENST00000359984 SLC29A2Q14542 456 aa20.08■□□□□ 0.81
CLN3-205ENST00000359984 DENND2CQ68D51 928 aa20.08■□□□□ 0.81
CLN3-205ENST00000359984 CAMK1DQ8IU85 385 aa20.08■□□□□ 0.81
CLN3-205ENST00000359984 PLPP6Q8IY26 295 aa20.08■□□□□ 0.81
CLN3-205ENST00000359984 KDM1BQ8NB78 822 aa20.08■□□□□ 0.81
CLN3-205ENST00000359984 OR2A12Q8NGT7 310 aa20.08■□□□□ 0.81
CLN3-205ENST00000359984 TTC25Q96NG3 672 aa20.08■□□□□ 0.81
CLN3-205ENST00000359984 MTG2Q9H4K7 406 aa20.08■□□□□ 0.81
CLN3-205ENST00000359984 SLC8A2Q9UPR5 921 aa20.08■□□□□ 0.81
CLN3-205ENST00000359984 ARIH1Q9Y4X5 557 aaPredicted RBP20.08■□□□□ 0.81
CLN3-205ENST00000359984 PIAS3Q9Y6X2 628 aa20.08■□□□□ 0.81
CLN3-205ENST00000359984 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP20.07■□□□□ 0.8
CLN3-205ENST00000359984 NDST3O95803 873 aa20.07■□□□□ 0.8
CLN3-205ENST00000359984 PDHA1P08559 390 aa20.07■□□□□ 0.8
CLN3-205ENST00000359984 CCNHP51946 323 aaPredicted RBP20.07■□□□□ 0.8
CLN3-205ENST00000359984 GPX6P59796 221 aa20.07■□□□□ 0.8
CLN3-205ENST00000359984 GALNT3Q14435 633 aa20.07■□□□□ 0.8
CLN3-205ENST00000359984 FNDC3BQ53EP0 1204 aaKnown RBP20.07■□□□□ 0.8
CLN3-205ENST00000359984 IER5LQ5T953 404 aa20.07■□□□□ 0.8
CLN3-205ENST00000359984 NUDT18Q6ZVK8 323 aa20.07■□□□□ 0.8
CLN3-205ENST00000359984 PALM2Q8IXS6 379 aa20.07■□□□□ 0.8
CLN3-205ENST00000359984 IQCKQ8N0W5 287 aa20.07■□□□□ 0.8
CLN3-205ENST00000359984 ZNF366Q8N895 744 aa20.07■□□□□ 0.8
CLN3-205ENST00000359984 UHMK1Q8TAS1 419 aaKnown RBP20.07■□□□□ 0.8
CLN3-205ENST00000359984 UCMAQ8WVF2 138 aa20.07■□□□□ 0.8
CLN3-205ENST00000359984 STAMBPL1Q96FJ0 436 aa20.07■□□□□ 0.8
CLN3-205ENST00000359984 TRIM56Q9BRZ2 755 aaKnown RBP20.07■□□□□ 0.8
CLN3-205ENST00000359984 ZC3H7BQ9UGR2 993 aaKnown RBP20.07■□□□□ 0.8
CLN3-205ENST00000359984 PIGNO95427 931 aa20.07■□□□□ 0.8
CLN3-205ENST00000359984 POP4O95707 220 aaKnown RBP20.07■□□□□ 0.8
CLN3-205ENST00000359984 HLA-DPA1P20036 260 aa20.07■□□□□ 0.8
CLN3-205ENST00000359984 MSLNQ13421 630 aaPredicted RBP20.07■□□□□ 0.8
CLN3-205ENST00000359984 ZNF234Q14588 700 aa20.07■□□□□ 0.8
CLN3-205ENST00000359984 CFAP58Q5T655 872 aa20.07■□□□□ 0.8
CLN3-205ENST00000359984 CASC4Q6P4E1 433 aa20.07■□□□□ 0.8
CLN3-205ENST00000359984 CAPN12Q6ZSI9 719 aa20.07■□□□□ 0.8
CLN3-205ENST00000359984 RALGPS2Q86X27 583 aaPredicted RBP20.07■□□□□ 0.8
CLN3-205ENST00000359984 SUGP1Q8IWZ8 645 aaKnown RBP20.07■□□□□ 0.8
CLN3-205ENST00000359984 CHST14Q8NCH0 376 aa20.07■□□□□ 0.8
CLN3-205ENST00000359984 PTPRN2Q92932 1015 aa20.07■□□□□ 0.8
CLN3-205ENST00000359984 IL22Q9GZX6 179 aa20.07■□□□□ 0.8
CLN3-205ENST00000359984 C8orf33Q9H7E9 229 aaPredicted RBP20.07■□□□□ 0.8
CLN3-205ENST00000359984 PLAC1Q9HBJ0 212 aa20.07■□□□□ 0.8
CLN3-205ENST00000359984 THAP10Q9P2Z0 257 aaPredicted RBP20.07■□□□□ 0.8
CLN3-205ENST00000359984 COL4A2P08572 1712 aa20.06■□□□□ 0.8
CLN3-205ENST00000359984 FZD6O60353 706 aa20.06■□□□□ 0.8
CLN3-205ENST00000359984 SSTR1P30872 391 aa20.06■□□□□ 0.8
CLN3-205ENST00000359984 RECQLP46063 649 aaPredicted RBP20.06■□□□□ 0.8
CLN3-205ENST00000359984 BCL2L1Q07817 233 aa20.06■□□□□ 0.8
CLN3-205ENST00000359984 TDGQ13569 410 aa20.06■□□□□ 0.8
CLN3-205ENST00000359984 EMC10Q5UCC4 262 aa20.06■□□□□ 0.8
CLN3-205ENST00000359984 PDCD6IPQ8WUM4 868 aaKnown RBP20.06■□□□□ 0.8
CLN3-205ENST00000359984 EZH1Q92800 747 aaPredicted RBP20.06■□□□□ 0.8
CLN3-205ENST00000359984 CFAP36Q96G28 342 aa20.06■□□□□ 0.8
CLN3-205ENST00000359984 ATP13A3Q9H7F0 1226 aa20.06■□□□□ 0.8
CLN3-205ENST00000359984 VPS37BQ9H9H4 285 aa20.06■□□□□ 0.8
CLN3-205ENST00000359984 PLAAQ9Y263 795 aa20.06■□□□□ 0.8
CLN3-205ENST00000359984 STARD13Q9Y3M8 1113 aa20.06■□□□□ 0.8
CLN3-205ENST00000359984 WASH3PC4AMC7 463 aa20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms