RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 SFRP1Q8N474 314 aa11.84□□□□□ -0.51
COL9A1-202ENST00000357250 ZNF655Q8N720 491 aaPredicted RBP11.84□□□□□ -0.51
COL9A1-202ENST00000357250 ST13P5Q8NFI4 369 aaPredicted RBP11.84□□□□□ -0.51
COL9A1-202ENST00000357250 CENPIQ92674 756 aaPredicted RBP11.84□□□□□ -0.51
COL9A1-202ENST00000357250 ROGDIQ9GZN7 287 aa11.84□□□□□ -0.51
COL9A1-202ENST00000357250 RGPD5Q99666 1765 aa11.84□□□□□ -0.51
COL9A1-202ENST00000357250 TCRBV9S1A1TA0A576 114 aa11.84□□□□□ -0.51
COL9A1-202ENST00000357250 FTH1P02794 183 aa11.84□□□□□ -0.51
COL9A1-202ENST00000357250 LPOP22079 712 aaPredicted RBP11.84□□□□□ -0.51
COL9A1-202ENST00000357250 CD86P42081 329 aa11.84□□□□□ -0.51
COL9A1-202ENST00000357250 RPL5P46777 297 aaKnown RBP11.84□□□□□ -0.51
COL9A1-202ENST00000357250 MARCKSL1P49006 195 aa11.84□□□□□ -0.51
COL9A1-202ENST00000357250 MAPKAPK3Q16644 382 aa11.84□□□□□ -0.51
COL9A1-202ENST00000357250 METTL21CQ5VZV1 264 aa11.84□□□□□ -0.51
COL9A1-202ENST00000357250 PACS1Q6VY07 963 aa11.84□□□□□ -0.51
COL9A1-202ENST00000357250 MON1AQ86VX9 555 aa11.84□□□□□ -0.51
COL9A1-202ENST00000357250 PHC3Q8NDX5 983 aa11.84□□□□□ -0.51
COL9A1-202ENST00000357250 ALG3Q92685 438 aa11.84□□□□□ -0.51
COL9A1-202ENST00000357250 TRIM63Q969Q1 353 aa11.84□□□□□ -0.51
COL9A1-202ENST00000357250 MPP4Q96JB8 637 aa11.84□□□□□ -0.51
COL9A1-202ENST00000357250 Q96MT0 163 aa11.84□□□□□ -0.51
COL9A1-202ENST00000357250 OSBPL11Q9BXB4 747 aa11.84□□□□□ -0.51
COL9A1-202ENST00000357250 OXCT2Q9BYC2 517 aaPredicted RBP11.84□□□□□ -0.51
COL9A1-202ENST00000357250 PCDH18Q9HCL0 1135 aa11.84□□□□□ -0.51
COL9A1-202ENST00000357250 NCKAP1Q9Y2A7 1128 aa11.84□□□□□ -0.51
COL9A1-202ENST00000357250 SNX8Q9Y5X2 465 aa11.84□□□□□ -0.51
COL9A1-202ENST00000357250 ANKDD1BA6NHY2 528 aa11.84□□□□□ -0.51
COL9A1-202ENST00000357250 CCNE2O96020 404 aa11.84□□□□□ -0.51
COL9A1-202ENST00000357250 PLK1P53350 603 aa11.84□□□□□ -0.51
COL9A1-202ENST00000357250 CDC42P60953 191 aa11.84□□□□□ -0.51
COL9A1-202ENST00000357250 IKBKEQ14164 716 aa11.84□□□□□ -0.51
COL9A1-202ENST00000357250 PDZK1Q5T2W1 519 aa11.84□□□□□ -0.51
COL9A1-202ENST00000357250 NPNTQ6UXI9 565 aa11.84□□□□□ -0.51
COL9A1-202ENST00000357250 PAGE2Q7Z2X7 111 aa11.84□□□□□ -0.51
COL9A1-202ENST00000357250 AGAP11Q8TF27 550 aa11.84□□□□□ -0.51
COL9A1-202ENST00000357250 SNRNP27Q8WVK2 155 aaKnown RBP11.84□□□□□ -0.51
COL9A1-202ENST00000357250 PGLYRP2Q96PD5 576 aa11.84□□□□□ -0.51
COL9A1-202ENST00000357250 FAIM2Q9BWQ8 316 aa11.84□□□□□ -0.51
COL9A1-202ENST00000357250 ASB8Q9H765 288 aa11.84□□□□□ -0.51
COL9A1-202ENST00000357250 RHBDL2Q9NX52 303 aa11.84□□□□□ -0.51
COL9A1-202ENST00000357250 SMPD4Q9NXE4 827 aa11.84□□□□□ -0.51
COL9A1-202ENST00000357250 PCDHGC3Q9UN70 934 aa11.84□□□□□ -0.51
COL9A1-202ENST00000357250 SMIM35A0A1B0GVV1 85 aa11.83□□□□□ -0.51
COL9A1-202ENST00000357250 BCLAF3A2AJT9 711 aaKnown RBP11.83□□□□□ -0.51
COL9A1-202ENST00000357250 C21orf59P57076 290 aa11.83□□□□□ -0.51
COL9A1-202ENST00000357250 RPL7AP62424 266 aaKnown RBP11.83□□□□□ -0.51
COL9A1-202ENST00000357250 RIPK1Q13546 671 aa11.83□□□□□ -0.51
COL9A1-202ENST00000357250 BROXQ5VW32 411 aa11.83□□□□□ -0.51
COL9A1-202ENST00000357250 ZDHHC20Q5W0Z9 365 aa11.83□□□□□ -0.51
COL9A1-202ENST00000357250 ABHD15Q6UXT9 468 aa11.83□□□□□ -0.51
COL9A1-202ENST00000357250 GPRIN3Q6ZVF9 776 aa11.83□□□□□ -0.51
COL9A1-202ENST00000357250 TMEM139Q8IV31 216 aa11.83□□□□□ -0.51
COL9A1-202ENST00000357250 C12orf50Q8NA57 414 aaPredicted RBP11.83□□□□□ -0.51
COL9A1-202ENST00000357250 PRCCQ92733 491 aaPredicted RBP11.83□□□□□ -0.51
COL9A1-202ENST00000357250 USP7Q93009 1102 aa11.83□□□□□ -0.51
COL9A1-202ENST00000357250 SKA1Q96BD8 255 aa11.83□□□□□ -0.51
COL9A1-202ENST00000357250 MCCC1Q96RQ3 725 aaPredicted RBP11.83□□□□□ -0.51
COL9A1-202ENST00000357250 NFKBIZQ9BYH8 718 aa11.83□□□□□ -0.51
COL9A1-202ENST00000357250 PAIP1Q9H074 479 aaKnown RBP11.83□□□□□ -0.51
COL9A1-202ENST00000357250 SLITRK2Q9H156 845 aa11.83□□□□□ -0.51
COL9A1-202ENST00000357250 KLQ9UEF7 1012 aa11.83□□□□□ -0.51
COL9A1-202ENST00000357250 ZNF510Q9Y2H8 683 aa11.83□□□□□ -0.51
COL9A1-202ENST00000357250 TBC1D30Q9Y2I9 924 aa11.83□□□□□ -0.51
COL9A1-202ENST00000357250 GSTK1Q9Y2Q3 226 aa11.83□□□□□ -0.51
COL9A1-202ENST00000357250 MFHAS1Q9Y4C4 1052 aa11.83□□□□□ -0.51
COL9A1-202ENST00000357250 MYBL2P10244 700 aa11.83□□□□□ -0.52
COL9A1-202ENST00000357250 UQCRBP14927 111 aa11.83□□□□□ -0.52
COL9A1-202ENST00000357250 ADSSP30520 456 aa11.83□□□□□ -0.52
COL9A1-202ENST00000357250 POU5F1Q01860 360 aaKnown RBP11.83□□□□□ -0.52
COL9A1-202ENST00000357250 CDK18Q07002 472 aa11.83□□□□□ -0.52
COL9A1-202ENST00000357250 GRM3Q14832 879 aa11.83□□□□□ -0.52
COL9A1-202ENST00000357250 NOMO2Q5JPE7 1267 aa11.83□□□□□ -0.52
COL9A1-202ENST00000357250 ABRAXAS1Q6UWZ7 409 aa11.83□□□□□ -0.52
COL9A1-202ENST00000357250 EPHX4Q8IUS5 362 aa11.83□□□□□ -0.52
COL9A1-202ENST00000357250 MUC13Q9H3R2 512 aa11.83□□□□□ -0.52
COL9A1-202ENST00000357250 RIBC2Q9H4K1 309 aa11.83□□□□□ -0.52
COL9A1-202ENST00000357250 CCNB1IP1Q9NPC3 277 aa11.83□□□□□ -0.52
COL9A1-202ENST00000357250 SEMA4BQ9NPR2 832 aaPredicted RBP11.83□□□□□ -0.52
COL9A1-202ENST00000357250 PIH1D1Q9NWS0 290 aaKnown RBP11.83□□□□□ -0.52
COL9A1-202ENST00000357250 TRAV19A0A0A6YYK7 116 aa11.83□□□□□ -0.52
COL9A1-202ENST00000357250 SMNDC1O75940 238 aaKnown RBP eCLIP11.83□□□□□ -0.52
COL9A1-202ENST00000357250 TNFSF9P41273 254 aa11.83□□□□□ -0.52
COL9A1-202ENST00000357250 HIRAP54198 1017 aaPredicted RBP11.83□□□□□ -0.52
COL9A1-202ENST00000357250 ATN1P54259 1190 aaPredicted RBP11.83□□□□□ -0.52
COL9A1-202ENST00000357250 TAS2R40P59535 323 aa11.83□□□□□ -0.52
COL9A1-202ENST00000357250 MAP2K5Q13163 448 aa11.83□□□□□ -0.52
COL9A1-202ENST00000357250 HSDL1Q3SXM5 330 aa11.83□□□□□ -0.52
COL9A1-202ENST00000357250 RSBN1Q5VWQ0 802 aaPredicted RBP11.83□□□□□ -0.52
COL9A1-202ENST00000357250 HGSNATQ68CP4 663 aa11.83□□□□□ -0.52
COL9A1-202ENST00000357250 SLC41A1Q8IVJ1 513 aa11.83□□□□□ -0.52
COL9A1-202ENST00000357250 SLC4A11Q8NBS3 891 aa11.83□□□□□ -0.52
COL9A1-202ENST00000357250 SLC44A1Q8WWI5 657 aa11.83□□□□□ -0.52
COL9A1-202ENST00000357250 ZNF558Q96NG5 402 aa11.83□□□□□ -0.52
COL9A1-202ENST00000357250 HOPXQ9BPY8 73 aaPredicted RBP11.83□□□□□ -0.52
COL9A1-202ENST00000357250 UNKQ9C0B0 810 aaKnown RBP11.83□□□□□ -0.52
COL9A1-202ENST00000357250 FANCEQ9HB96 536 aa11.83□□□□□ -0.52
COL9A1-202ENST00000357250 SNX15Q9NRS6 342 aa11.83□□□□□ -0.52
COL9A1-202ENST00000357250 ZMYM5Q9UJ78 669 aa11.83□□□□□ -0.52
COL9A1-202ENST00000357250 ZNF180Q9UJW8 692 aa11.83□□□□□ -0.52
COL9A1-202ENST00000357250 FAM50BQ9Y247 325 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms