RNA–Protein interactions for RNA: ENST00000342245.8

SMPD1-201, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMPD1, Length 2,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-201ENST00000342245 VPS72Q15906 364 aa18.68■□□□□ 0.58
SMPD1-201ENST00000342245 ARL13AQ5H913 290 aaPredicted RBP18.68■□□□□ 0.58
SMPD1-201ENST00000342245 SLC16A12Q6ZSM3 486 aa18.68■□□□□ 0.58
SMPD1-201ENST00000342245 EXOC8Q8IYI6 725 aa18.68■□□□□ 0.58
SMPD1-201ENST00000342245 PLD5Q8N7P1 536 aa18.68■□□□□ 0.58
SMPD1-201ENST00000342245 SLC43A3Q8NBI5 491 aa18.68■□□□□ 0.58
SMPD1-201ENST00000342245 TTC9Q92623 222 aa18.68■□□□□ 0.58
SMPD1-201ENST00000342245 ING2Q9H160 280 aa18.68■□□□□ 0.58
SMPD1-201ENST00000342245 C12orf10Q9HB07 376 aa18.68■□□□□ 0.58
SMPD1-201ENST00000342245 HPS4Q9NQG7 708 aa18.68■□□□□ 0.58
SMPD1-201ENST00000342245 MTMR10Q9NXD2 777 aa18.68■□□□□ 0.58
SMPD1-201ENST00000342245 WDR27A2RRH5 827 aa18.68■□□□□ 0.58
SMPD1-201ENST00000342245 H0YCG3 227 aa18.68■□□□□ 0.58
SMPD1-201ENST00000342245 M0R3G1 203 aa18.68■□□□□ 0.58
SMPD1-201ENST00000342245 EI24O14681 340 aa18.68■□□□□ 0.58
SMPD1-201ENST00000342245 SNRPB2P08579 225 aaKnown RBP18.68■□□□□ 0.58
SMPD1-201ENST00000342245 BMP4P12644 408 aa18.68■□□□□ 0.58
SMPD1-201ENST00000342245 IL12AP29459 219 aa18.68■□□□□ 0.58
SMPD1-201ENST00000342245 GRIA4P48058 902 aa18.68■□□□□ 0.58
SMPD1-201ENST00000342245 CASC4Q6P4E1 433 aa18.68■□□□□ 0.58
SMPD1-201ENST00000342245 KIAA0319LQ8IZA0 1049 aa18.68■□□□□ 0.58
SMPD1-201ENST00000342245 SPARTQ8N0X7 666 aa18.68■□□□□ 0.58
SMPD1-201ENST00000342245 TRPV3Q8NET8 790 aa18.68■□□□□ 0.58
SMPD1-201ENST00000342245 OR7A2PQ8NGA2 310 aa18.68■□□□□ 0.58
SMPD1-201ENST00000342245 JOSD2Q8TAC2 188 aa18.68■□□□□ 0.58
SMPD1-201ENST00000342245 MUL1Q969V5 352 aa18.68■□□□□ 0.58
SMPD1-201ENST00000342245 PPP1R36Q96LQ0 422 aa18.68■□□□□ 0.58
SMPD1-201ENST00000342245 MYRFLQ96LU7 910 aa18.68■□□□□ 0.58
SMPD1-201ENST00000342245 CLPBQ9H078 707 aa18.68■□□□□ 0.58
SMPD1-201ENST00000342245 MUC13Q9H3R2 512 aa18.68■□□□□ 0.58
SMPD1-201ENST00000342245 SPC25Q9HBM1 224 aa18.68■□□□□ 0.58
SMPD1-201ENST00000342245 ANKEF1Q9NU02 776 aa18.68■□□□□ 0.58
SMPD1-201ENST00000342245 AFG3L2Q9Y4W6 797 aa18.68■□□□□ 0.58
SMPD1-201ENST00000342245 MRASO14807 208 aa18.67■□□□□ 0.58
SMPD1-201ENST00000342245 CLIC3O95833 236 aa18.67■□□□□ 0.58
SMPD1-201ENST00000342245 MYL3P08590 195 aa18.67■□□□□ 0.58
SMPD1-201ENST00000342245 IL1R1P14778 569 aa18.67■□□□□ 0.58
SMPD1-201ENST00000342245 BCAR1P56945 870 aa18.67■□□□□ 0.58
SMPD1-201ENST00000342245 HSPA14Q0VDF9 509 aa18.67■□□□□ 0.58
SMPD1-201ENST00000342245 DDX59Q5T1V6 619 aaKnown RBP eCLIP18.67■□□□□ 0.58
SMPD1-201ENST00000342245 TREML2Q5T2D2 321 aa18.67■□□□□ 0.58
SMPD1-201ENST00000342245 RSBN1Q5VWQ0 802 aaPredicted RBP18.67■□□□□ 0.58
SMPD1-201ENST00000342245 TWF2Q6IBS0 349 aaKnown RBP18.67■□□□□ 0.58
SMPD1-201ENST00000342245 LCN8Q6JVE9 175 aa18.67■□□□□ 0.58
SMPD1-201ENST00000342245 DCLK2Q8N568 766 aa18.67■□□□□ 0.58
SMPD1-201ENST00000342245 WDTC1Q8N5D0 677 aa18.67■□□□□ 0.58
SMPD1-201ENST00000342245 LSMEM1Q8N8F7 131 aa18.67■□□□□ 0.58
SMPD1-201ENST00000342245 HDAC2Q92769 488 aaKnown RBP18.67■□□□□ 0.58
SMPD1-201ENST00000342245 ZNF358Q9NW07 568 aa18.67■□□□□ 0.58
SMPD1-201ENST00000342245 ZDHHC2Q9UIJ5 367 aa18.67■□□□□ 0.58
SMPD1-201ENST00000342245 BAG5Q9UL15 447 aa18.67■□□□□ 0.58
SMPD1-201ENST00000342245 ANKRD6Q9Y2G4 727 aa18.67■□□□□ 0.58
SMPD1-201ENST00000342245 DAGLAQ9Y4D2 1042 aa18.67■□□□□ 0.58
SMPD1-201ENST00000342245 PALM2-AKAP2B1ALY0 433 aaPredicted RBP18.67■□□□□ 0.58
SMPD1-201ENST00000342245 ATP6V1B2P21281 511 aa18.67■□□□□ 0.58
SMPD1-201ENST00000342245 YAP1P46937 504 aaKnown RBP18.67■□□□□ 0.58
SMPD1-201ENST00000342245 SNAP25P60880 206 aa18.67■□□□□ 0.58
SMPD1-201ENST00000342245 TOP3AQ13472 1001 aaPredicted RBP18.67■□□□□ 0.58
SMPD1-201ENST00000342245 NFE2Q16621 373 aaPredicted RBP18.67■□□□□ 0.58
SMPD1-201ENST00000342245 PAGE2BQ5JRK9 111 aa18.67■□□□□ 0.58
SMPD1-201ENST00000342245 CHST15Q7LFX5 561 aaPredicted RBP18.67■□□□□ 0.58
SMPD1-201ENST00000342245 PIWIL3Q7Z3Z3 882 aaKnown RBP18.67■□□□□ 0.58
SMPD1-201ENST00000342245 ADCK1Q86TW2 530 aa18.67■□□□□ 0.58
SMPD1-201ENST00000342245 C4orf19Q8IY42 314 aa18.67■□□□□ 0.58
SMPD1-201ENST00000342245 CXorf38Q8TB03 319 aa18.67■□□□□ 0.58
SMPD1-201ENST00000342245 TSNARE1Q96NA8 513 aa18.67■□□□□ 0.58
SMPD1-201ENST00000342245 DACH2Q96NX9 599 aa18.67■□□□□ 0.58
SMPD1-201ENST00000342245 RBBP8Q99708 897 aa18.67■□□□□ 0.58
SMPD1-201ENST00000342245 MXRA8Q9BRK3 442 aa18.67■□□□□ 0.58
SMPD1-201ENST00000342245 ZNF221Q9UK13 617 aa18.67■□□□□ 0.58
SMPD1-201ENST00000342245 ZBTB21Q9ULJ3 1066 aa18.67■□□□□ 0.58
SMPD1-201ENST00000342245 A0A096LPK6 155 aa18.66■□□□□ 0.58
SMPD1-201ENST00000342245 UPK1BO75841 260 aa18.66■□□□□ 0.58
SMPD1-201ENST00000342245 CFBP00751 764 aa18.66■□□□□ 0.58
SMPD1-201ENST00000342245 IMPDH1P20839 514 aa18.66■□□□□ 0.58
SMPD1-201ENST00000342245 HOXD10P28358 340 aa18.66■□□□□ 0.58
SMPD1-201ENST00000342245 EPHX2P34913 555 aa18.66■□□□□ 0.58
SMPD1-201ENST00000342245 HADHAP40939 763 aa18.66■□□□□ 0.58
SMPD1-201ENST00000342245 SLC26A2P50443 739 aa18.66■□□□□ 0.58
SMPD1-201ENST00000342245 FASTKQ14296 549 aaKnown RBP18.66■□□□□ 0.58
SMPD1-201ENST00000342245 CTF1Q16619 201 aa18.66■□□□□ 0.58
SMPD1-201ENST00000342245 CYP4V2Q6ZWL3 525 aaPredicted RBP18.66■□□□□ 0.58
SMPD1-201ENST00000342245 CMTR2Q8IYT2 770 aaKnown RBP18.66■□□□□ 0.58
SMPD1-201ENST00000342245 AFAP1L2Q8N4X5 818 aa18.66■□□□□ 0.58
SMPD1-201ENST00000342245 RHOXF1Q8NHV9 184 aa18.66■□□□□ 0.58
SMPD1-201ENST00000342245 HOPXQ9BPY8 73 aaPredicted RBP18.66■□□□□ 0.58
SMPD1-201ENST00000342245 SLC39A3Q9BRY0 314 aa18.66■□□□□ 0.58
SMPD1-201ENST00000342245 LHX5Q9H2C1 402 aa18.66■□□□□ 0.58
SMPD1-201ENST00000342245 STAU2Q9NUL3 570 aaKnown RBP eCLIP18.66■□□□□ 0.58
SMPD1-201ENST00000342245 DAB1O75553 588 aa18.66■□□□□ 0.58
SMPD1-201ENST00000342245 GABARAPO95166 117 aa18.66■□□□□ 0.58
SMPD1-201ENST00000342245 DNAJB1P25685 340 aa18.66■□□□□ 0.58
SMPD1-201ENST00000342245 LIMK2P53671 638 aa18.66■□□□□ 0.58
SMPD1-201ENST00000342245 POLD3Q15054 466 aaPredicted RBP18.66■□□□□ 0.58
SMPD1-201ENST00000342245 SPANXN3Q5MJ09 141 aa18.66■□□□□ 0.58
SMPD1-201ENST00000342245 MFSD14BQ5SR56 506 aa18.66■□□□□ 0.58
SMPD1-201ENST00000342245 TRAPPC3LQ5T215 181 aa18.66■□□□□ 0.58
SMPD1-201ENST00000342245 CCSAPQ6IQ19 270 aaPredicted RBP18.66■□□□□ 0.58
SMPD1-201ENST00000342245 FAM196AQ6ZSG2 479 aa18.66■□□□□ 0.58
SMPD1-201ENST00000342245 SLC38A6Q8IZM9 456 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms