RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 A0A1W2PQU0 124 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 TSPAN6O43657 245 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 TPOP07202 933 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 PFKLP17858 780 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 SESN3P58005 492 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 SNX1Q13596 522 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 CARD16Q5EG05 197 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 C8orf74Q6P047 294 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 UNQ6126/PRO20091Q6UXV3 157 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 KIRREL3Q8IZU9 778 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 PLA2G15Q8NCC3 412 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 ADAM32Q8TC27 787 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 CYB5D2Q8WUJ1 264 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 SNX33Q8WV41 574 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 CASKIN2Q8WXE0 1202 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 FGF11Q92914 225 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 MTBPQ96DY7 904 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 NUS1Q96E22 293 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 HS6ST2Q96MM7 605 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 MCEEQ96PE7 176 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 ZNF518BQ9C0D4 1074 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 ZFATQ9P243 1243 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 TRPC4Q9UBN4 977 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 DRG1Q9Y295 367 aaKnown RBP8.48□□□□□ -1.05
HMGB1-203ENST00000341423 MYADML2A6NDP7 307 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 TSPAN1O60635 241 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 CYP3A4P08684 503 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 ACP5P13686 325 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 SOX11P35716 441 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 RHDQ02161 417 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 PLA2G4EQ3MJ16 856 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 BRMS1LQ5PSV4 323 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 RAVER1Q8IY67 606 aaKnown RBP8.48□□□□□ -1.05
HMGB1-203ENST00000341423 C9orf43Q8TAL5 461 aaPredicted RBP8.48□□□□□ -1.05
HMGB1-203ENST00000341423 PMEPA1Q969W9 287 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 MYO19Q96H55 970 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 PLEKHA8Q96JA3 519 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 TAPBPLQ9BX59 468 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 ABCB6Q9NP58 842 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 GPR160Q9UJ42 338 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 CCDC187A0A096LP49 1063 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 SNTNA6NMZ2 147 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 PHF2O75151 1096 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 TYRP1P17643 537 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 TACR2P21452 398 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 TSSK4Q6SA08 328 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 RAB11FIP2Q7L804 512 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 C17orf64Q86WR6 236 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 COMMD2Q86X83 199 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 CCNYL1Q8N7R7 359 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 FAM172AQ8WUF8 416 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 FCRL3Q96P31 734 aaPredicted RBP8.47□□□□□ -1.05
HMGB1-203ENST00000341423 CATSPER2Q96P56 530 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 ACO2Q99798 780 aaKnown RBP8.47□□□□□ -1.05
HMGB1-203ENST00000341423 AP4E1Q9UPM8 1137 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 GNEQ9Y223 722 aaKnown RBP8.47□□□□□ -1.05
HMGB1-203ENST00000341423 ROBO3Q96MS0 1386 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 KCNN4O15554 427 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 ECEL1O95672 775 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 FYNP06241 537 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 SNRPB2P08579 225 aaKnown RBP8.47□□□□□ -1.05
HMGB1-203ENST00000341423 POU1F1P28069 291 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 GALK1P51570 392 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 CDH4P55283 916 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 EIF3EP60228 445 aaKnown RBP8.47□□□□□ -1.05
HMGB1-203ENST00000341423 MRPS15P82914 257 aaKnown RBP8.47□□□□□ -1.05
HMGB1-203ENST00000341423 MUM1Q2TAK8 710 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 RICTORQ6R327 1708 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 PIGZQ86VD9 579 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 OR6K2Q8NGY2 324 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 PYROXD1Q8WU10 500 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 C12orf66Q96MD2 445 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 TEFMQ96QE5 360 aaKnown RBP8.47□□□□□ -1.05
HMGB1-203ENST00000341423 KCNK13Q9HB14 408 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 CPSF2Q9P2I0 782 aaKnown RBP8.47□□□□□ -1.05
HMGB1-203ENST00000341423 TBX21Q9UL17 535 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 PADI1Q9ULC6 663 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 PARP4Q9UKK3 1724 aaKnown RBP8.47□□□□□ -1.05
HMGB1-203ENST00000341423 ECI2O75521 394 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 P04436 131 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 MSL3P1P0C860 447 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 PRLRP16471 622 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 MAOBP27338 520 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 ARL4CP56559 192 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 ABHD15Q6UXT9 468 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 CENPUQ71F23 418 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 PAGE2Q7Z2X7 111 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 PIGWQ7Z7B1 504 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 PEG10Q86TG7 708 aaKnown RBP8.47□□□□□ -1.05
HMGB1-203ENST00000341423 LIX1LQ8IVB5 337 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 CDK20Q8IZL9 346 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 FAM9CQ8IZT9 166 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 WNT8BQ93098 351 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 ZFRQ96KR1 1074 aaKnown RBP8.47□□□□□ -1.05
HMGB1-203ENST00000341423 RPL10LQ96L21 214 aaKnown RBP8.47□□□□□ -1.05
HMGB1-203ENST00000341423 EBNA1BP2Q99848 306 aaKnown RBP8.47□□□□□ -1.05
HMGB1-203ENST00000341423 VPS11Q9H270 941 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 EVLQ9UI08 416 aaPredicted RBP8.47□□□□□ -1.05
HMGB1-203ENST00000341423 TLX3O43711 291 aaPredicted RBP8.47□□□□□ -1.05
HMGB1-203ENST00000341423 BUB1BO60566 1050 aaPredicted RBP8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms