RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 KCND2Q9NZV8 630 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 SLCO3A1Q9UIG8 710 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 AP4S1Q9Y587 144 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 SCINQ9Y6U3 715 aa5.65□□□□□ -1.5
CSDE1-202ENST00000339438 hCG_1818297A0A087WSY0 165 aa5.65□□□□□ -1.51
CSDE1-202ENST00000339438 FAM172BPA6NC97 362 aa5.65□□□□□ -1.51
CSDE1-202ENST00000339438 PITPNM1O00562 1244 aa5.65□□□□□ -1.51
CSDE1-202ENST00000339438 SPAG6O75602 509 aa5.65□□□□□ -1.51
CSDE1-202ENST00000339438 GCNT3O95395 438 aa5.65□□□□□ -1.51
CSDE1-202ENST00000339438 FYNP06241 537 aa5.65□□□□□ -1.51
CSDE1-202ENST00000339438 BMP2P12643 396 aa5.65□□□□□ -1.51
CSDE1-202ENST00000339438 TTKP33981 857 aa5.65□□□□□ -1.51
CSDE1-202ENST00000339438 RPL22P35268 128 aaKnown RBP5.65□□□□□ -1.51
CSDE1-202ENST00000339438 CDKN2BP42772 138 aa5.65□□□□□ -1.51
CSDE1-202ENST00000339438 SLC1A6P48664 564 aa5.65□□□□□ -1.51
CSDE1-202ENST00000339438 NRLP54845 237 aa5.65□□□□□ -1.51
CSDE1-202ENST00000339438 RACK1P63244 317 aaKnown RBP5.65□□□□□ -1.51
CSDE1-202ENST00000339438 PPP2R2BQ00005 443 aa5.65□□□□□ -1.51
CSDE1-202ENST00000339438 OTUD4Q01804 1114 aaKnown RBP5.65□□□□□ -1.51
CSDE1-202ENST00000339438 RFTN1Q14699 578 aaPredicted RBP5.65□□□□□ -1.51
CSDE1-202ENST00000339438 ZNF618Q5T7W0 954 aa5.65□□□□□ -1.51
CSDE1-202ENST00000339438 ARHGEF16Q5VV41 709 aa5.65□□□□□ -1.51
CSDE1-202ENST00000339438 C8orf82Q6P1X6 216 aaPredicted RBP5.65□□□□□ -1.51
CSDE1-202ENST00000339438 LINC00299Q6ZSB3 139 aa5.65□□□□□ -1.51
CSDE1-202ENST00000339438 KCTD8Q6ZWB6 473 aa5.65□□□□□ -1.51
CSDE1-202ENST00000339438 FAM156AQ8NDB6 213 aa5.65□□□□□ -1.51
CSDE1-202ENST00000339438 CAPSLQ8WWF8 208 aa5.65□□□□□ -1.51
CSDE1-202ENST00000339438 CLP1Q92989 425 aaKnown RBP5.65□□□□□ -1.51
CSDE1-202ENST00000339438 GPRASP2Q96D09 838 aa5.65□□□□□ -1.51
CSDE1-202ENST00000339438 CDK5RAP1Q96SZ6 601 aaKnown RBP5.65□□□□□ -1.51
CSDE1-202ENST00000339438 RMDN3Q96TC7 470 aa5.65□□□□□ -1.51
CSDE1-202ENST00000339438 CIB1Q99828 191 aa5.65□□□□□ -1.51
CSDE1-202ENST00000339438 SLC4A5Q9BY07 1137 aa5.65□□□□□ -1.51
CSDE1-202ENST00000339438 WDR11Q9BZH6 1224 aa5.65□□□□□ -1.51
CSDE1-202ENST00000339438 IFT122Q9HBG6 1241 aa5.65□□□□□ -1.51
CSDE1-202ENST00000339438 PCDH12Q9NPG4 1184 aa5.65□□□□□ -1.51
CSDE1-202ENST00000339438 FBXO8Q9NRD0 319 aa5.65□□□□□ -1.51
CSDE1-202ENST00000339438 TBC1D22BQ9NU19 505 aa5.65□□□□□ -1.51
CSDE1-202ENST00000339438 MRPL11Q9Y3B7 192 aaKnown RBP5.65□□□□□ -1.51
CSDE1-202ENST00000339438 CNTNAP2Q9UHC6 1331 aa5.65□□□□□ -1.51
CSDE1-202ENST00000339438 GOLGA8CPA6NN73 597 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 TISP43B9A030 160 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 M0QX08 132 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 GIPC1O14908 333 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 CSPG5O95196 566 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 HTR1AP08908 422 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 CSH1P0DML2 217 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 CSH2P0DML3 217 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 ARP10275 920 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 CCNA2P20248 432 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 FGFR3P22607 806 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 ETV3P41162 512 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 PKNOX1P55347 436 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 PRKCQQ04759 706 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 SEPT6Q14141 434 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 KCNJ11Q14654 390 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 TAZQ16635 292 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 GDF6Q6KF10 455 aaPredicted RBP5.64□□□□□ -1.51
CSDE1-202ENST00000339438 RNF19BQ6ZMZ0 732 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 GSTA5Q7RTV2 222 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 MIER3Q7Z3K6 550 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 TFAP2DQ7Z6R9 452 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 SLC26A11Q86WA9 606 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 HERC6Q8IVU3 1022 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 RHOT1Q8IXI2 618 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 PGAM4Q8N0Y7 254 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 CACTIN-AS1Q8N1I8 211 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 TERB1Q8NA31 727 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 HMGCLL1Q8TB92 370 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 TMEM40Q8WWA1 233 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 TTC9Q92623 222 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 SDCCAG3Q96C92 435 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 VCPIP1Q96JH7 1222 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 OR52B2Q96RD2 323 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 IRF2BPLQ9H1B7 796 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 NEK6Q9HC98 313 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 KLHL11Q9NVR0 708 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 FKBP14Q9NWM8 211 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 PSME2Q9UL46 239 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 CEP192Q8TEP8 1941 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 TMEM150BA6NC51 233 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 ZSCAN5BA6NJL1 495 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 CLDN25C9JDP6 229 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 NRP1O14786 923 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 AURKAO14965 403 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 TMCC2O75069 709 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 BMP4P12644 408 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 SPNP16150 400 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 CKMT2P17540 419 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 RHDQ02161 417 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 MAMLD1Q13495 774 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 SUZ12Q15022 739 aaKnown RBP5.64□□□□□ -1.51
CSDE1-202ENST00000339438 DPY19L1Q2PZI1 675 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 FASTKD1Q53R41 847 aaKnown RBP5.64□□□□□ -1.51
CSDE1-202ENST00000339438 BOLA3Q53S33 107 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 TMEM240Q5SV17 173 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 PERM1Q5SV97 790 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 LDLRAP1Q5SW96 308 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 TIFABQ6ZNK6 161 aa5.64□□□□□ -1.51
CSDE1-202ENST00000339438 CHST15Q7LFX5 561 aaPredicted RBP5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms