RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 TAS2R14Q9NYV8 317 aa12.72□□□□□ -0.37
SDC3-201ENST00000336798 TBC1D3DA0A087WVF3 549 aa12.71□□□□□ -0.37
SDC3-201ENST00000336798 TBC1D3IA0A087WXS9 549 aa12.71□□□□□ -0.37
SDC3-201ENST00000336798 TBC1D3EA0A087X179 549 aa12.71□□□□□ -0.37
SDC3-201ENST00000336798 TBC1D3KA0A087X1G2 549 aa12.71□□□□□ -0.37
SDC3-201ENST00000336798 FAM92AA1XBS5 289 aa12.71□□□□□ -0.37
SDC3-201ENST00000336798 TBC1D3FA6NER0 549 aaPredicted RBP12.71□□□□□ -0.37
SDC3-201ENST00000336798 TBC1D3LB9A6J9 549 aa12.71□□□□□ -0.37
SDC3-201ENST00000336798 NEDD8-MDP1E9PL57 170 aa12.71□□□□□ -0.37
SDC3-201ENST00000336798 ACKR2O00590 384 aa12.71□□□□□ -0.37
SDC3-201ENST00000336798 TBC1D3HP0C7X1 549 aa12.71□□□□□ -0.37
SDC3-201ENST00000336798 TFPIP10646 304 aa12.71□□□□□ -0.37
SDC3-201ENST00000336798 OMPP47874 163 aa12.71□□□□□ -0.37
SDC3-201ENST00000336798 TARBP2Q15633 366 aaKnown RBP12.71□□□□□ -0.37
SDC3-201ENST00000336798 PAPD7Q5XG87 772 aaKnown RBP12.71□□□□□ -0.37
SDC3-201ENST00000336798 TBC1D3GQ6DHY5 549 aa12.71□□□□□ -0.37
SDC3-201ENST00000336798 TBC1D3CQ6IPX1 549 aa12.71□□□□□ -0.37
SDC3-201ENST00000336798 TBC1D3Q8IZP1 549 aaPredicted RBP12.71□□□□□ -0.37
SDC3-201ENST00000336798 LZTR1Q8N653 840 aa12.71□□□□□ -0.37
SDC3-201ENST00000336798 DNAJC18Q9H819 358 aa12.71□□□□□ -0.37
SDC3-201ENST00000336798 PSME2Q9UL46 239 aa12.71□□□□□ -0.37
SDC3-201ENST00000336798 GSTK1Q9Y2Q3 226 aa12.71□□□□□ -0.37
SDC3-201ENST00000336798 ZCCHC11Q5TAX3 1644 aaKnown RBP12.71□□□□□ -0.37
SDC3-201ENST00000336798 MED14O60244 1454 aa12.71□□□□□ -0.37
SDC3-201ENST00000336798 WNT10BO00744 389 aa12.71□□□□□ -0.37
SDC3-201ENST00000336798 OR10H3O60404 316 aa12.71□□□□□ -0.37
SDC3-201ENST00000336798 PTPRAP18433 802 aa12.71□□□□□ -0.37
SDC3-201ENST00000336798 KDELR1P24390 212 aa12.71□□□□□ -0.37
SDC3-201ENST00000336798 CDC42P60953 191 aa12.71□□□□□ -0.37
SDC3-201ENST00000336798 FNBP1LQ5T0N5 605 aa12.71□□□□□ -0.37
SDC3-201ENST00000336798 PSTKQ8IV42 348 aaKnown RBP12.71□□□□□ -0.37
SDC3-201ENST00000336798 MAB21L3Q8N8X9 362 aa12.71□□□□□ -0.37
SDC3-201ENST00000336798 OR52K2Q8NGK3 314 aa12.71□□□□□ -0.37
SDC3-201ENST00000336798 SUN5Q8TC36 379 aa12.71□□□□□ -0.37
SDC3-201ENST00000336798 SOCS4Q8WXH5 440 aa12.71□□□□□ -0.37
SDC3-201ENST00000336798 QRFPRQ96P65 431 aa12.71□□□□□ -0.37
SDC3-201ENST00000336798 IMP3Q9NV31 184 aaKnown RBP12.71□□□□□ -0.37
SDC3-201ENST00000336798 SLC28A2O43868 658 aa12.71□□□□□ -0.37
SDC3-201ENST00000336798 RXRGP48443 463 aa12.71□□□□□ -0.37
SDC3-201ENST00000336798 PURAQ00577 322 aaKnown RBP12.71□□□□□ -0.37
SDC3-201ENST00000336798 PPIDQ08752 370 aaKnown RBP12.71□□□□□ -0.37
SDC3-201ENST00000336798 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.71□□□□□ -0.37
SDC3-201ENST00000336798 C2orf49Q9BVC5 232 aaPredicted RBP12.71□□□□□ -0.37
SDC3-201ENST00000336798 CDADC1Q9BWV3 514 aa12.71□□□□□ -0.37
SDC3-201ENST00000336798 MTFR1LQ9H019 292 aa12.71□□□□□ -0.37
SDC3-201ENST00000336798 RACGAP1Q9H0H5 632 aa12.71□□□□□ -0.37
SDC3-201ENST00000336798 CLN6Q9NWW5 311 aa12.71□□□□□ -0.37
SDC3-201ENST00000336798 PCDHA11Q9Y5I1 949 aa12.71□□□□□ -0.37
SDC3-201ENST00000336798 TNFSF9P41273 254 aa12.71□□□□□ -0.38
SDC3-201ENST00000336798 UBAP2LQ14157 1087 aaKnown RBP12.71□□□□□ -0.38
SDC3-201ENST00000336798 KCTD4Q8WVF5 259 aa12.71□□□□□ -0.38
SDC3-201ENST00000336798 JSRP1Q96MG2 331 aaPredicted RBP12.71□□□□□ -0.38
SDC3-201ENST00000336798 ACSS2Q9NR19 701 aa12.71□□□□□ -0.38
SDC3-201ENST00000336798 IL17RBQ9NRM6 502 aa12.71□□□□□ -0.38
SDC3-201ENST00000336798 PLK2Q9NYY3 685 aa12.71□□□□□ -0.38
SDC3-201ENST00000336798 COMMD9Q9P000 198 aa12.71□□□□□ -0.38
SDC3-201ENST00000336798 C1QTNF3-AMACRE9PGA6 284 aa12.71□□□□□ -0.38
SDC3-201ENST00000336798 SMIM10L2AP0DMW4 78 aa12.71□□□□□ -0.38
SDC3-201ENST00000336798 SMIM10L2BP0DMW5 78 aa12.71□□□□□ -0.38
SDC3-201ENST00000336798 NRG1Q02297 640 aaPredicted RBP12.71□□□□□ -0.38
SDC3-201ENST00000336798 RGS1Q08116 209 aa12.71□□□□□ -0.38
SDC3-201ENST00000336798 CPSF6Q16630 551 aaKnown RBP eCLIP12.71□□□□□ -0.38
SDC3-201ENST00000336798 GET4Q7L5D6 327 aaPredicted RBP12.71□□□□□ -0.38
SDC3-201ENST00000336798 VANGL1Q8TAA9 524 aaPredicted RBP12.71□□□□□ -0.38
SDC3-201ENST00000336798 FAIM2Q9BWQ8 316 aa12.71□□□□□ -0.38
SDC3-201ENST00000336798 SUCOQ9UBS9 1254 aaKnown RBP12.71□□□□□ -0.38
SDC3-201ENST00000336798 PHF11Q9UIL8 331 aa12.71□□□□□ -0.38
SDC3-201ENST00000336798 HACD1B0YJ81 288 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 CCNB1P14635 433 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 CDK16Q00536 496 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 SEMA5AQ13591 1074 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 VGLL4Q14135 290 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 ATP13A4Q4VNC1 1196 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 MZT2AQ6P582 158 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 SPESP1Q6UW49 350 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 ZNF410Q86VK4 478 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 HNRNPLLQ8WVV9 542 aaKnown RBP12.7□□□□□ -0.38
SDC3-201ENST00000336798 ATP13A3Q9H7F0 1226 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 GMPPBQ9Y5P6 360 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 TRUB2O95900 331 aaKnown RBP12.7□□□□□ -0.38
SDC3-201ENST00000336798 ALAS2P22557 587 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 PARP6Q2NL67 630 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 STX12Q86Y82 276 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 ADHFE1Q8IWW8 467 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 TMEM199Q8N511 208 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 TRAPPC9Q96Q05 1148 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 MBD2Q9UBB5 411 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 UMODL1Q5DID0 1318 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 TLL1O43897 1013 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 STX11O75558 287 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 TNFAIP8O95379 198 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 PDHA2P29803 388 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 AXLP30530 894 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 TGFB2P61812 414 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 CBX3Q13185 183 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 PCID2Q5JVF3 399 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 SAMD4BQ5PRF9 694 aaKnown RBP12.7□□□□□ -0.38
SDC3-201ENST00000336798 PERM1Q5SV97 790 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 STK40Q8N2I9 435 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 ZNF540Q8NDQ6 660 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms