RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 CST11Q9H112 138 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 ZFYVE28Q9HCC9 887 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 PLK2Q9NYY3 685 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 UGT2B17O75795 530 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 SASH3O75995 380 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 DBTP11182 482 aaKnown RBP14.39□□□□□ -0.11
COL7A1-201ENST00000328333 CYP11B2P19099 503 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 MNDAP41218 407 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 KCNJ2P63252 427 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 ZBTB14O43829 449 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 OTCP00480 354 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 PTPN1P18031 435 aaKnown RBP14.39□□□□□ -0.11
COL7A1-201ENST00000328333 PRDX5P30044 214 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 ERVK-9P63128 1117 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 FBXO43Q4G163 708 aa14.39□□□□□ -0.11
COL7A1-201ENST00000328333 H0YJX3 145 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 PSIP1O75475 530 aaKnown RBP14.38□□□□□ -0.11
COL7A1-201ENST00000328333 TFRCP02786 760 aaKnown RBP14.38□□□□□ -0.11
COL7A1-201ENST00000328333 ITGB3P05106 788 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 MSL3P1P0C860 447 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 CES1P23141 567 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 BMT2Q1RMZ1 405 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 ANKRD26P1Q6NSI1 321 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 PHF21BQ96EK2 531 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 SERPINB11Q96P15 392 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 PRDM4Q9UKN5 801 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 SHOX2O60902 331 aaPredicted RBP14.38□□□□□ -0.11
COL7A1-201ENST00000328333 ENO2P09104 434 aaPredicted RBP14.38□□□□□ -0.11
COL7A1-201ENST00000328333 AP1S1P61966 158 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 TRIM32Q13049 653 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 PSMD5Q16401 504 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 USP43Q70EL4 1123 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 PIF1Q9H611 641 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 TMED5Q9Y3A6 229 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 NCANO14594 1321 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 AP5Z1O43299 807 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 ULK1O75385 1050 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 PARNO95453 639 aaKnown RBP14.38□□□□□ -0.11
COL7A1-201ENST00000328333 OR8H1Q8NGG4 311 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 SMARCD1Q96GM5 515 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 NT5MQ9NPB1 228 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 GRIP1Q9Y3R0 1128 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 A0A0A0MRY4 1105 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 MTA2O94776 668 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 CLCN5P51795 746 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 FAM20CQ8IXL6 584 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 OR8H3Q8N146 312 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 SPATA13Q96N96 652 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 CCDC177Q9NQR7 707 aaPredicted RBP14.38□□□□□ -0.11
COL7A1-201ENST00000328333 VPS28Q9UK41 221 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 DDX3YO15523 660 aaKnown RBP14.38□□□□□ -0.11
COL7A1-201ENST00000328333 FRMD7Q6ZUT3 714 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 PTF1AQ7RTS3 328 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 ZNF571Q7Z3V5 609 aaPredicted RBP14.38□□□□□ -0.11
COL7A1-201ENST00000328333 THAP5Q7Z6K1 395 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 OR2T34Q8NGX1 318 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 OR2T3Q8NH03 318 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 NSUN4Q96CB9 384 aaKnown RBP14.38□□□□□ -0.11
COL7A1-201ENST00000328333 CLPTM1LQ96KA5 538 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 HMGCRP04035 888 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 GPIP06744 558 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 PTPN11Q06124 597 aaPredicted RBP14.38□□□□□ -0.11
COL7A1-201ENST00000328333 IL18R1Q13478 541 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 C1orf189Q5VU69 101 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 DNAAF5Q86Y56 855 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 DNAJA4Q8WW22 397 aaPredicted RBP14.38□□□□□ -0.11
COL7A1-201ENST00000328333 CDHR5Q9HBB8 845 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 CASKO14936 926 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 ADAM17P78536 824 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 FAXCQ5TGI0 409 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 ITIH5Q86UX2 942 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 P2RY8Q86VZ1 359 aa14.38□□□□□ -0.11
COL7A1-201ENST00000328333 C11orf24Q96F05 449 aaPredicted RBP14.38□□□□□ -0.11
COL7A1-201ENST00000328333 HYIQ5T013 277 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 IRAK1BP1Q5VVH5 260 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 FBXO32Q969P5 355 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 PHF12Q96QT6 1004 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 KIF13AQ9H1H9 1805 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 TM7SF2O76062 418 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 IGKV5-2P06315 115 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 GABRB2P47870 512 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 DSG4Q86SJ6 1040 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 SYT12Q8IV01 421 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 RCOR3Q9P2K3 495 aaPredicted RBP14.37□□□□□ -0.11
COL7A1-201ENST00000328333 PLOD2O00469 737 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 SETD1AO15047 1707 aaKnown RBP14.37□□□□□ -0.11
COL7A1-201ENST00000328333 RBM34P42696 430 aaKnown RBP14.37□□□□□ -0.11
COL7A1-201ENST00000328333 RFX3P48380 749 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 ALDH9A1P49189 494 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 IFI35P80217 286 aaPredicted RBP14.37□□□□□ -0.11
COL7A1-201ENST00000328333 KBTBD7Q8WVZ9 684 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 CISHQ9NSE2 258 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 NARFQ9UHQ1 456 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 RAMP2O60895 175 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 EIF4BP23588 611 aaKnown RBP14.37□□□□□ -0.11
COL7A1-201ENST00000328333 ATP6V0D1P61421 351 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 MKRN4PQ13434 485 aaPredicted RBP14.37□□□□□ -0.11
COL7A1-201ENST00000328333 MTM1Q13496 603 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 CBWD3Q5JTY5 395 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 CBWD5Q5RIA9 395 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms